Testing the Stochastic Dynamic Methodology (StDM) as a management tool in a shallow temperate estuary of south Europe (Mondego, Portugal)

Andreasen, 2001, Considerations for the development of a terrestrial index of ecological integrity, Ecol. Indic., 1, 21, 10.1016/S1470-160X(01)00007-3 Bamber, 1985, The autoecology of Cyathura carinata (Crustacea: Isopoda) in a cooling water discharge lagoon, J. Mar. Biol. Assoc. U.K., 65, 181, 10.1017/S0025315400060896 Beisner, B.E., Haydon, D.T., Cuddington, K., 2003. Alternative stable stages in ecology. Front. Ecol. Environ. 1, 376–382. www.frontiersinecoly.org. Broekhoven, 2006, Fuzzy rule-based macroinvertebrate habitat suitability models for running waters, Ecol. Model., 198, 71, 10.1016/j.ecolmodel.2006.04.006 Brosse, 2001, Abundance, diversity, and structure of freshwater invertebrates and fish communities: an artificial neural network approach, N. Z. J. Mar. Freshwater Res., 35, 135, 10.1080/00288330.2001.9516983 Cabecinha, 2004, Performance of a stochastic-dynamic modelling methodology for running waters ecological assessment, Ecol. Model., 175, 303, 10.1016/j.ecolmodel.2003.10.021 Cabral, 1999, The impact of macroalgal blooms on the use of the intertidal area and feeding behaviour of waders (Charadrii) in the Mondego estuary (west Portugal), Acta Oecol., 20, 417, 10.1016/S1146-609X(99)00126-5 Cabral, 2001, Modelling mosquitofish (Gambusia holbrooki) responses to Genapol OXD-080, a non-ionic surfactant, in rice fields, Ecol. Eng., 16, 537, 10.1016/S0925-8574(00)00116-6 Cabral, 2007, A stochastic dynamic methodology (SDM) to facilitate handling simple passerine indicators in the scope of the agri-environmental measures problematics, Ecol. Indic., 7, 34, 10.1016/j.ecolind.2005.09.004 Cardoso, 2002, The effects of different primary producers on Hydrobia ulvae population dynamics: a case study in a temperate intertidal estuary, J. Exp. Mar. Biol. Ecol., 277, 173, 10.1016/S0022-0981(02)00338-6 Cardoso, 2004, Macroinvertebrate response to different species of macroalgal mats and the role of disturbance history, J. Exp. Mar. Biol. Ecol., 308, 207, 10.1016/j.jembe.2004.02.018 Cardoso, 2004, Dynamic changes in seagrass assemblages under eutrophication and implications for recovery, J. Exp. Mar. Biol. Ecol., 302, 233, 10.1016/j.jembe.2003.10.014 Cardoso, 2005, The resilience of Hydrobia ulvae populations to anthropogenic and natural disturbances, Mar. Ecol. Prog. Ser., 289, 191, 10.3354/meps289191 Chaloupka, 2002, Stochastic simulation modelling of southern Great Barrier Reef green turtle population dynamics, Ecol. Model., 148, 79, 10.1016/S0304-3800(01)00433-1 Cloern, 2001, Our evolving conceptual model of coastal eutrophication problem, Mar. Ecol. Prog. Ser., 210, 223, 10.3354/meps210223 Costanza, 1992, Towards an operational definition of ecosystem health, 239 Costanza, 2001, Modelling ecological and economic systems with STELLA: Part III, Ecol. Model., 143, 1, 10.1016/S0304-3800(01)00358-1 Costanza, 2003, Introduction: spatially explicit landscape simulation models, 3 Džeroski, 1997, Using machine learning techniques in the construction of models. 2. Data analysis with rule induction, Ecol. Model., 95, 95, 10.1016/S0304-3800(96)00029-4 Džeroski, 2000, Predicting chemical parameters of river water quality from bioindicator data, Appl. Intell., 13, 7, 10.1023/A:1008323212047 Dolbeth, 2003, Short- and long-term effects of eutrophication on the secondary production of an intertidal macrobenthic community, Mar. Biol., 143, 1229, 10.1007/s00227-003-1133-5 Dolbeth, 2005, Annual production of estuarine fauna in different environmental conditions: an evaluation of the estimation methods, J. Exp. Mar. Biol. Ecol., 326, 115, 10.1016/j.jembe.2005.05.010 Ferreira, 2004, Population dynamics of Cyathura carinata (Isopoda) in a eutrophic temperate estuary, Estuar. Coast. Shelf Sci., 61, 669, 10.1016/j.ecss.2004.08.001 Flindt, 1997, Description of the three shallow estuaries: Mondego River (Portugal), Roskilde Fjord (Denmark) and the Lagoon of Venice (Italy), Ecol. Model., 102, 17, 10.1016/S0304-3800(97)00092-6 Jørgensen, 1994, Models as instruments for combination of ecological theory and environmental practice, Ecol. Model., 75/76, 5, 10.1016/0304-3800(94)90003-5 Jørgensen, 1997, The application of a model with dynamic structure to simulate the effect of mass fish mortality on zooplankton structure in Lago di Annone, Hydrobiologia, 356, 87, 10.1023/A:1003171012639 Jørgensen, 1999, State-of-the-art of ecological modelling with emphasis on development of structural dynamic models, Ecol. Model., 120, 75, 10.1016/S0304-3800(99)00093-9 2001 Kamer, 2001, Macroalgal bloom dynamics in a highly eutrophic southern California estuary, Estuaries, 24, 623, 10.2307/1353262 Kareiva, 1993 Lillebø, 1999, Population structure, dynamics and production of Hydrobia ulvae (Pennant) (Mollusca: Prosobranchia) along an eutrophication gradient in the Mondego estuary (Portugal), Acta Oecol., 20, 289, 10.1016/S1146-609X(99)00137-X Lillebø, 2005, Management of shallow temperate estuary to control eutrophication: The effect of hydrodynamics on the system's nutrient loading, Estuar. Coast. Shelf Sci., 65, 697, 10.1016/j.ecss.2005.07.009 Lopes, 2000, Impact of macroalgal blooms and wader predation on intertidal macroinvertebrates: experimental evidence from the Mondego estuary (Portugal), J. Exp. Mar. Biol. Ecol., 249, 165, 10.1016/S0022-0981(00)00202-1 Lopes, 2002, Status and habitat use of waders in the Mondego estuary, 219 Lopes, 2005, A ten year study of variation, trends and seasonality of shorebird community in the Mondego estuary, Portugal, Waterbirds, 28, 8, 10.1675/1524-4695(2005)028[0008:ATYSOV]2.0.CO;2 Lopes, 2006, Influence of macroalgal mats on abundance and distribution of Dunlin Calidris alpina in estuaries: A long term approach, Mar. Ecol. Prog. Ser., 323, 11, 10.3354/meps323011 Manel, 1999, Comparing discriminant analysis, neural networks and logistic regression for predicting species distributions: a case study with a Himalayan river bird, Ecol. Model., 120, 337, 10.1016/S0304-3800(99)00113-1 Marques, 1994, Population dynamics, life history and production of Cyathura carinata (Krøyer) (Isopoda: Anthuridae) in the Mondego estuary, Portugal, J. Crustacean Biol., 14, 258, 10.2307/1548906 Marques, 2002, Characterisation of the macroinvertebrate benthic communities in the Mondego estuary, 169 Marques, 2003, Impact of eutrophication and river management within a framework of ecosystem theories, Ecol. Model., 166, 147, 10.1016/S0304-3800(03)00134-0 Martins, 1997, Modelling the effects of green macroalgae blooms on the population dynamics of Cyathura carinata (Crustacea: Isopoda) in an eutrophied estuary, Ecol. Model., 102, 33, 10.1016/S0304-3800(97)00098-7 Martins, 2001, Hydrodinamics as a major factor controlling the occurrence of green macroalgal blooms in a eutrophic estuary: a case study on the influence of precipitation and river management, Estuar. Coast. Shelf Sci., 52, 165, 10.1006/ecss.2000.0708 Múrias, 1996, Short-term effects of intertidal macroalgal blooms on the macrohabitat selection and feeding behaviour of wading birds in the Mondego estuary (West Portugal), Estuar. Coast. Shelf Sci., 43, 677, 10.1006/ecss.1996.0096 Múrias, 1997, Low water use of the mondego estuary (West Portugal) by waders, Ardeola, 44, 79 Múrias, 2002, Effects of eutrophication on waders (Aves: Charadrii) in the Mondego estuary: a multi-level approach, 527 Múrias, 2005, Competition for feeding in waders: a case study in an estuary of south temperate Europe (Mondego, Portugal), Hydrobiologia, 544, 155, 10.1007/s10750-005-0541-6 Neto, J.M., 2004. Nutrient Enrichment in a Temperate Macro-tidal System. Scenario Analysis and Contribution to Coastal Management. Ph.D. Thesis. University of Coimbra, 139 pp. Norkko, 2000, Drifting algal mats as an alternative habitat for benthic invertebrates: species specific responses to a transient resource, J. Exp. Mar. Biol. Ecol., 248, 79, 10.1016/S0022-0981(00)00155-6 Oberdorf, 2001, A probabilistic model characterizing fish assemblages of French rivers: a framework for environmental assessment, Freshwater Biol., 46, 399, 10.1046/j.1365-2427.2001.00669.x Patrício, 2004, Ascendency as an ecological indicator: a case study of estuarine pulse eutrophication., Estuar. Coast. Shelf Sci., 60, 23, 10.1016/j.ecss.2003.11.017 Pardal, 2000, Impact of eutrophication on the life cycle, population dynamics and production of Ampithoe valida (Amphipoda) along an estuarine spatial gradient (Mondego estuary, Portugal), Mar. Ecol. Prog. Ser., 196, 207, 10.3354/meps196207 Pardal, 2004, Assessing environmental quality: a novel approach, Mar. Ecol. Prog. Ser., 267, 1, 10.3354/meps267001 2000, 407 Raffaelli, 1987, An experimental investigation of the effects of shorebirds and flatfish predation on estuarine invertebrates, Estuar. Coast. Shelf Sci., 24, 1, 10.1016/0272-7714(87)90002-3 Raffaelli, 1989, Long-term changes in nutrients, weed mats and shorebirds in an estuarine system, Cahiers Biol. Mar., 30, 259 Santos, 2003, Development of a stochastic dynamic model for ecological indicators’ prediction in changed Mediterranean agroecosystems of north-eastern Portugal, Ecol. Indic., 3, 285, 10.1016/j.ecolind.2003.11.007 Santos, 2007, Simulating the impact of socio-economic trends on threatened Iberian wolf populations (Canis lupus signatus) in North-eastern Portugal, Ecol. Indic., 7, 649, 10.1016/j.ecolind.2006.07.004 Sfriso, 2001, Benthic macrofauna changes in areas of Venice lagoon populated by seagrasses or seaweeds, Mar. Environ. Res., 52, 323, 10.1016/S0141-1136(01)00089-7 Silva-Santos, 2006, A Stochastic Dynamic Methodology (SDM) to the modelling of trophic interactions, with a focus on estuarine eutrophication scenarios, Ecol. Indic., 6, 394, 10.1016/j.ecolind.2005.05.001 1995 Sola, 1993, Dinámica de poblaciónes y biología de Cyathura carinata en el estuario del Bidasoa, Publicaciones Especiales Inst. Español Oceanogr., 11, 57 Valiela, 2004, Salt marshes: biological controls of food webs in a diminishing environment, J. Exp. Mar. Biol. Ecol., 300, 131, 10.1016/j.jembe.2003.12.023 Van der Meer, 1996, Statistical analysis of long-term monthly Oystercatcher Haematopus ostralegus counts, Ardea, 84A, 39 Verdelhos, 2005, The effect of eutrophication abatement on the bivalve Scrobicularia plana., Estuar. Coast. Shelf Sci., 63, 261, 10.1016/j.ecss.2004.11.019 Voinov, 2001, Surface water flow in landscape models. 2. Patuxent watershed case study, Ecol. Model., 119, 211, 10.1016/S0304-3800(99)00056-3 Walley, 1995, Biological monitoring: a comparison between Bayesian, neural and machine learning methods of water quality classification Walley, W.J., Fontama, V.N., Martin, R.W., 1998. Applications of artificial intelligence in river quality surveys. R&D Technical Report E52, Environment Agency, Bristol. Walley, 2000, New approaches to river quality classification based upon artificial intelligence Wooldridge, 2000, The effects of a single freshwater release into the Kromme Estuary. Part 3. Estuarine zooplankton response, Water SA, 26, 311 1996