Temporal transcriptome analysis provides molecular insights into flower development in red-flesh pitaya
Tài liệu tham khảo
Nerd, 2002, High summer temperatures inhibit flowering in vine pitaya crops (Hylocereus spp.), Sci Hortic, 96, 343, 10.1016/S0304-4238(02)00093-6
Xi, 2019, Transcriptome analysis clarified genes involved in betalain biosynthesis in the fruit of red pitayas (Hylocereus costaricensis), Molecules, 24, 445, 10.3390/molecules24030445
Xiong, 2020, Transcriptomic analysis of flower induction for long-day pitaya by supplementary lighting in short-day winter season, BMC Genomics, 21, 329, 10.1186/s12864-020-6726-6
Wu, 2022, Transcriptome and metabolome analysis provide insights into the composition and biosynthesis of grassy aroma volatiles in white-fleshed pitaya, ACS Omega, 7, 6518, 10.1021/acsomega.1c05340
Suh, 2014, Metabolite profiling of red and white pitayas (Hylocereus polyrhizus and Hylocereus undatus) for comparing betalain biosynthesis and antioxidant activity, J Agric Food Chem, 62, 8764, 10.1021/jf5020704
Trivellini, 2020, Pitaya, an attractive alternative crop for mediterranean region, Agronomy, 10, 1065, 10.3390/agronomy10081065
Zhou, 2020, Proteogenomic analysis of pitaya reveals cold stress-related molecular signature, Peer J, 8, e8540, 10.7717/peerj.8540
Mercado-Silva, 2018, Pitaya-Hylocereus undatus (Haw), Exotic Fruits Reference Guide, 339, 10.1016/B978-0-12-803138-4.00045-9
Keiichi, 2010, Seasonal differences in diurnal patterns of metabolities and enzyme activities in pitaya (Hylocereus undatus) grown in a temperate zone, Jpn Soc Hortic Sci, 79, 135, 10.2503/jjshs1.79.135
Li, 2018, Homozygote depression in gamete-derived dragon-fruit (Hylocereus) lines, Front Plant Sci, 8, 2142, 10.3389/fpls.2017.02142
Wang, 2019, The highly drought-tolerant pitaya (Hylocereus undatus) is a non-facultative CAM plant under both well-watered and drought conditions, J Hortic Sci Biotechnol, 94, 643, 10.1080/14620316.2019.1595747
Wybraniec, 2007, Minor betalains in fruits of Hylocereus species, Phytochemistry, 68, 251, 10.1016/j.phytochem.2006.10.002
Nurmahani, 2012, Antibacterial property of Hylocereus polyrhizus and Hylocereus undatus peel extracts, Int Food Res J, 19, 77
Pietta, 2000, Flavonoids as antioxidants, J Nat Prod, 63, 1035, 10.1021/np9904509
Poulose, 2012, Anthocyanin-rich açai (Euterpe oleracea Mart.) fruit pulp fractions attenuate inflammatory stress signaling in mouse brain BV-2 microglial cells, J Agric Food Chem, 60, 1084, 10.1021/jf203989k
Utaminingsih, 2019, Anatomical structure of sepal and petal of red dragon fruit (Hylocereus polyrhizus Britton & Rose) during flower development, Jurnal Biodjati, 4, 163, 10.15575/biodjati.v4i2.4581
Jiang, 2012, The photoperiod-regulated bud formation of red pitaya (Hylocereus sp.), Hort Sci, 47, 1063
Hayama, 2003, Shedding light on the circadian clock and the photoperiodic control of flowering, Curr Opin Plant Biol, 6, 13, 10.1016/S1369-5266(02)00011-0
Andrés, 2012, The genetic basis of flowering responses to seasonal cues, Nat Rev Genet, 13, 627, 10.1038/nrg3291
Gregis, 2013, Identification of pathways directly regulated by Short vegetative phase during vegetative and reproductive development in Arabidopsis, Genome Biol, 14, R56, 10.1186/gb-2013-14-6-r56
Pan, 2017, Piriformospora indica promotes early flowering in Arabidopsis through regulation of the photoperiod and gibberellin pathways, PLoS ONE, 12, e0189791, 10.1371/journal.pone.0189791
Yamaguchi, 2013, A molecular framework for auxin-mediated initiation of flower primordia, Devcell, 24, 271
Song, 2015, Photoperiodic flowering: time measurement mechanisms in leaves, Annu Rev Plant Biol, 66, 441, 10.1146/annurev-arplant-043014-115555
Li, 2010, Involvement of brassinosteroid signals in the floral-induction network of Arabidopsis, J Exp Bot, 61, 4221, 10.1093/jxb/erq241
Niwa, 2018, Jasmonic acid facilitates flower opening and floral organ development through the upregulated expression of SlMYB21 transcription factor in tomato, Biosci Biotechnol Biochem, 82, 292, 10.1080/09168451.2017.1422107
Shim, 2017, Circadian clock and photoperiodic flowering in Arabidopsis: CONSTANS is a hub for signal integration, Plant Physiol, 173, 5, 10.1104/pp.16.01327
Fujiwara, 2008, Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis, Plant Cell, 20, 2960, 10.1105/tpc.108.061531
Song, 2013, Constitutive expression of the K-domain of a Vaccinium corymbosum SOC1-like (VcSOC1-K) MADS-box gene is sufficient to promote flowering in tobacco, Plant Cell Rep, 32, 1819, 10.1007/s00299-013-1495-1
Yang, 2011, A putative flowering-time-related Dof transcription factor gene, JcDof3, is controlled by the circadian clock in Jatropha curcas, Plant Sci, 181, 667, 10.1016/j.plantsci.2011.05.003
Balsemão-Pires, 2013, Functional study of TCP23 in Arabidopsis thaliana during plant development, Plant Physiol Biochem, 67, 120, 10.1016/j.plaphy.2013.03.009
Lv, 2019, Identification of putative drought-responsive genes in rice using gene co-expression analysis, Bioinformation, 15, 480, 10.6026/97320630015480
Shahzad, 2020, Comparative transcriptome analysis between inbred and hybrids reveals molecular insights into yield heterosis of upland cotton, BMC Plant Biol, 20, 239, 10.1186/s12870-020-02442-z
Shahzad, 2020, Comparative transcriptome analysis of inbred lines and contrasting hybrids reveals overdominance mediate early biomass vigor in hybrid cotton, BMC Genomics, 21, 140, 10.1186/s12864-020-6561-9
Mutz, 2013, Transcriptome analysis using next-generation sequencing, Curr Opin Biotechnol, 24, 22, 10.1016/j.copbio.2012.09.004
Meng, 2020, The regulatory pathways of distinct flowering characteristics in Chinese jujube, Hortic Res, 7, 123, 10.1038/s41438-020-00344-7
Walworth, 2016, Transcript profile of flowering regulatory genes in VcFT-overexpressing blueberry plants, PLoS ONE, 11, e0156993, 10.1371/journal.pone.0156993
Wang, 2020, Floral transcriptomes reveal gene networks in pineapple floral growth and fruit development, Commun Biol, 3, 500, 10.1038/s42003-020-01235-2
Villar, 2020, Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing), PloS one, 15, 10.1371/journal.pone.0230110
Prudencio, 2020, Identification of early and late flowering time candidate genes in endodormant and ecodormant almond flower buds, Tree Physiol, 41, 589, 10.1093/treephys/tpaa151
Alagna, 2016, Transcript analysis and regulative events during flower development in olive (Olea europaea L.), PLoS One, 11, 10.1371/journal.pone.0152943
Varkonyi-Gasic, 2011, Identification and characterization of flowering genes in kiwifruit: sequence conservation and role in kiwifruit flower development, BMC Plant Biol, 11, 72, 10.1186/1471-2229-11-72
Qingzhu, 2016, Transcriptomic analysis reveals key genes related to betalain biosynthesis in pulp coloration of Hylocereus polyrhizus, Front Plant Sci, 6, 1179, 10.3389/fpls.2015.01179
Xu, 2019, Transcriptomic de novo analysis of pitaya (Hylocereus polyrhizus) canker disease caused by Neoscytalidium dimidiatum, BMC Genomics, 20, 10, 10.1186/s12864-018-5343-0
Zhou, 2020, Combined Transcriptome and Metabolome analysis of Pitaya fruit unveiled the mechanisms underlying Peel and pulp color formation, BMC Genomics, 21, 734, 10.1186/s12864-020-07133-5
Grabherr, 2011, Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data, Nat Biotechnol, 29, 644, 10.1038/nbt.1883
Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, 25, 3389, 10.1093/nar/25.17.3389
Yu, 2020, Dorsal root ganglion macrophages contribute to both the initiation and persistence of neuropathic pain, Nat Commun, 11, 264, 10.1038/s41467-019-13839-2
Kanehisa, 2007, KEGG for linking genomes to life and the environment, Nucleic Acids Res, 36, D480, 10.1093/nar/gkm882
Dossa, 2020, A novel motif in the 5’-UTR of an orphan gene ‘Big Root Biomass’ modulates root biomass in sesame, Plant Biotechnol J, 19, 1065, 10.1111/pbi.13531
Chen, 2019, Identification of reliable reference genes for quantitative real-time PCR normalization in pitaya, Plant Methods, 15, 70, 10.1186/s13007-019-0455-3
Koutinas, 2010, Flower induction and flower bud development in apple and sweet cherry, Biotechnol, 24, 1549
Reinhardt, 2003, Regulation of phyllotaxis by polar auxin transport, Nature, 426, 255, 10.1038/nature02081
Oh, 2013, A jasmonate ZIM-domain protein NaJAZd regulates floral jasmonic acid levels and counteracts flower abscission in Nicotiana attenuata plants, PLoS ONE, 8, 10.1371/journal.pone.0057868
Myers, 2009, Calcium-dependent protein kinases regulate polarized tip growth in pollen tubes, Plant J, 59, 528, 10.1111/j.1365-313X.2009.03894.x
Sanders, 2002, Calcium at the crossroads of signaling, Plant Cell, 14, S401, 10.1105/tpc.002899
Ramachandran, 1994, Transcription factors in plant growth and development, Curr Opin Genet Dev, 4, 642, 10.1016/0959-437X(94)90129-Q
Bangerth, 2009, Floral induction in mature, perennial angiosperm fruit trees: similarities and discrepancies with annual/biennial plants and the involvement of plant hormones, Sci Hortic, 122, 153, 10.1016/j.scienta.2009.06.014
Rademacher, 2011, A cellular expression map of the Arabidopsis Auxin response factor gene family, Plant J, 68, 597, 10.1111/j.1365-313X.2011.04710.x
Gangwar, 2020, Molecular mechanisms of the floral biology of Jatropha curcas: opportunities and challenges as an energy crop, Front Plant Sci, 11, 609, 10.3389/fpls.2020.00609
Heijmans, 2012, MADS-box genes and floral development: the dark side, J Exp Bot, 63, 5397, 10.1093/jxb/ers233
Cutler, 2010, Abscisic acid: emergence of a core signaling network, Annu Rev Plant Biol, 61, 651, 10.1146/annurev-arplant-042809-112122
Shu, 2018, APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism, New Phytol, 217, 977, 10.1111/nph.14880
Shu, 2014, Concurrent deficiency of gibberellins and abscisic acid causes plant male sterility, J Genet Genomics, 41, 601, 10.1016/j.jgg.2014.09.003
McAdam, 2016, Abscisic acid controlled sex before transpiration in vascular plants, Proc Natl Acad Sci, 113, 12862, 10.1073/pnas.1606614113
Zhang, 2016, A drought-inducible transcription factor delays reproductive timing in rice, Plant Physiol, 171, 334, 10.1104/pp.16.01691
Li, 2020, Roles of brassinosteroids in plant reproduction, Int J Mol Sci, 21, 872, 10.3390/ijms21030872
He, 2005, BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses, Science, 307, 1634, 10.1126/science.1107580
Cheng, 2012, No apical meristem (MtNAM) regulates floral organ identity and lateral organ separation in Medicago truncatula, New Phytol, 195, 71, 10.1111/j.1469-8137.2012.04147.x
Liu, 2011, Identification and expression analysis of ERF transcription factor genes in petunia during flower senescence and in response to hormone treatments, J Exp Bot, 62, 825, 10.1093/jxb/erq324
Duan, 2008, Stamen development in Arabidopsis is arrested by organ-specific overexpression of a cucumber ethylene synthesis gene CsACO2, Planta, 228, 537, 10.1007/s00425-008-0756-7
Johnston, 2009, Co-ordination of early and late ripening events in apples is regulated through differential sensitivities to ethylene, J Exp Bot, 60, 2689, 10.1093/jxb/erp122
Wang, 2007, MdERFs, two ethylene-response factors involved in apple fruit ripening, J Exp Bot, 58, 3743, 10.1093/jxb/erm224
Xie, 2019, AP2/ERF transcription factor regulatory networks in hormone and abiotic stress responses in Arabidopsis, Front Plant Sci, 10, 228, 10.3389/fpls.2019.00228
Sekozawa, 2003, Cold tolerance in'Kousui'Japanese pear and possibility for avoiding frost injury by treatment with n-propyl dihydrojasmonate, HortSci, 38, 288, 10.21273/HORTSCI.38.2.288
Jing-Hua, 2008, Salicylic acid-induced enhancement of cold tolerance through activation of antioxidative capacity in watermelon, Sci Hortic, 118, 200, 10.1016/j.scienta.2008.06.015
Mohammadi, 2015, Technology, Role of methyl jasmonate and salicylic acid applications on bloom delay, flowering and fruiting of ‘Elberta’Peach, Int J Hortic, 2, 75
Harper, 2001, Dissecting calcium oscillators in plant cells, Trends Plant Sci, 6, 395, 10.1016/S1360-1385(01)02023-4
Boudsocq, 2013, CDPKs in immune and stress signaling, Trends Plant Sci, 18, 30, 10.1016/j.tplants.2012.08.008
Shi, 2018, The Arabidopsis calcium-dependent protein kinases (CDPKs) and their roles in plant growth regulation and abiotic stress responses, Int J Mol Sci, 19, 1900, 10.3390/ijms19071900
Rodriguez, 1998, Protein phosphatase 2C (PP2C) function in higher plants, Plant Molecular Biol, 38, 919, 10.1023/A:1006054607850
Hauser, 2011, Evolution of abscisic acid synthesis and signaling mechanisms, Curr Biol, 21, R346, 10.1016/j.cub.2011.03.015
Manoharan, 2016, Molecular and functional characterization of Flowering locus T homologs in Allium cepa, Molecules, 21, 217, 10.3390/molecules21020217
Liu, 2017, MicroRNA319-regulated TCPs interact with FBHs and PFT1 to activate CO transcription and control flowering time in Arabidopsis, PLoS Genet, 13, e1006833, 10.1371/journal.pgen.1006833
Peeters, 2002, Submergence research using Rumex palustris as a model; looking back and going forward, J Exp Bot, 53, 391, 10.1093/jexbot/53.368.391
Tani, 2009, Characterization and expression analysis of Agamous-like, Seedstick-like, and Sepallata-like MADS-box genes in peach (Prunus persica) fruit, Plant Physiol Biochem, 47, 690, 10.1016/j.plaphy.2009.03.013
Wang, 2013, Over-expression of the PaAP1 gene from sweet cherry (Prunus avium L.) causes early flowering in Arabidopsis thaliana, J Plant Physiol, 170, 315, 10.1016/j.jplph.2012.09.015
Jofuku, 1994, Control of Arabidopsis flower and seed development by the homeotic gene Apetala2, Plant Cell, 6, 1211
Yamada, 2011, Ancestral expression patterns and evolutionary diversification of YABBY genes in angiosperms, Plant J, 67, 26, 10.1111/j.1365-313X.2011.04570.x
Chen, 1999, The Arabidopsis Filamentous flower gene is required for flower formation, Development, 126, 2715, 10.1242/dev.126.12.2715
Ambawat, 2013, MYB transcription factor genes as regulators for plant responses: an overview, Physiol Mol Biol Plants, 19, 307, 10.1007/s12298-013-0179-1
Kranz, 1998, Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana, Plant J, 16, 263, 10.1046/j.1365-313x.1998.00278.x
Agarwal, 2006, A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance, J Biol Chem, 281, 37636, 10.1074/jbc.M605895200
Kim, 2004, A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis, Proc Natl Acad Sci, 101, 13374, 10.1073/pnas.0405450101
Baucher, 2013, A role for the miR396/GRF network in specification of organ type during flower development, as supported by ectopic expression of P opulus trichocarpa miR396c in transgenic tobacco, Plant Biol, 15, 892, 10.1111/j.1438-8677.2012.00696.x
Luo, 2005, Down-regulation of OsGRF1 gene in rice rhd1 mutant results in reduced heading date, J Integr Plant Biol, 47, 745, 10.1111/j.1744-7909.2005.00071.x
Liu, 2014, OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4, Plant Physiol, 165, 160, 10.1104/pp.114.235564
Khatun, 2017, Molecular characterization and expression profiling of tomato GRF transcription factor family genes in response to abiotic stresses and phytohormones, Int J Mol Sci, 18, 1056, 10.3390/ijms18051056
Goubet, 2003, AtCSLA7, a cellulose synthase-like putative glycosyltransferase, is important for pollen tube growth and embryogenesis in Arabidopsis, Plant Physiol, 131, 547, 10.1104/pp.014555
Bosch, 2005, Pectin methylesterase, a regulator of pollen tube growth, Plant Physiol, 138, 1334, 10.1104/pp.105.059865
Singh, 2013, Differential expression of several xyloglucan endotransglucosylase/hydrolase genes regulates flower opening and petal abscission in roses, AoB Plants, 5, 10.1093/aobpla/plt030
Stitt, 2007, Multilevel genomics analysis of carbon signalling during low carbon availability: coordinating the supply and utilisation of carbon in a fluctuating environment, Funct Plant Biol, 34, 526, 10.1071/FP06249
Lemonnier, 2014, Expression of Arabidopsis sugar transport protein STP13 differentially affects glucose transport activity and basal resistance to Botrytis cinerea, Plant Mol Biol, 85, 473, 10.1007/s11103-014-0198-5
Satoh-Nagasawa, 2006, A trehalose metabolic enzyme controls inflorescence architecture in maize, Nature, 441, 227, 10.1038/nature04725
Grambow, 1983, The relationship between oxidase activity, peroxidase activity, hydrogen peroxide, and phenolic compounds in the degradation of indole-3-acetic acid in vitro, Planta, 157, 132, 10.1007/BF00393646