Taxonomic and phylogenetic status of non-tuberculous mycobacteria in a Caribbean setting

Tortoli, 2003, Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s, Clin Microbiol Rev, 16, 319, 10.1128/CMR.16.2.319-354.2003 Rastogi, 2001, The mycobacteria: an introduction to nomenclature and pathogenesis, Rev Sci Tech Off Int Epiz, 20, 21, 10.20506/rst.20.1.1265 Falkinham, 1996, Epidemiology of infection by nontuberculous mycobacteria, Clin Microbiol Rev, 9, 177, 10.1128/CMR.9.2.177 von Reyn, 1994, Persistent colonisation of potable water as a source of Mycobacterium avium infection in AIDS, Lancet, 343, 1137, 10.1016/S0140-6736(94)90239-9 Komijn, 1999, Prevalence of Mycobacterium avium in slaughter pigs in the Netherlands and comparison of IS1245 restriction fragment length polymorphism patterns of porcine and human isolates, J Clin Microbiol, 37, 1254, 10.1128/JCM.37.5.1254-1259.1999 Tortoli, 1997, Characterization of mycobacterial isolates phylogenetically related to, but different from Mycobacterium simiae, J Clin Microbiol, 35, 697, 10.1128/JCM.35.3.697-702.1997 Tortoli, 2003, Evaluation of INNO-LiPA MYCOBACTERIA v2: improved reverse hybridization multiple DNA probe assay for mycobacterial identification, J Clin Microbiol, 41, 4418, 10.1128/JCM.41.9.4418-4420.2003 Ausina, 1992, Mycobacterium alvei sp. nov., Int J Syst Bact, 42, 529, 10.1099/00207713-42-4-529 1996 Devallois, 1997, Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species, J Clin Microbio, 35, 2969, 10.1128/JCM.35.11.2969-2973.1997 Telenti, 1993, Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis, J Clin Microbiol, 31, 175, 10.1128/JCM.31.2.175-178.1993 Ringuet, 1999, hsp65 sequencing for identification of rapidly growing mycobacteria, J Clin Microbiol, 37, 852, 10.1128/JCM.37.3.852-857.1999 Kirschner, 1993, Genotypic identification and detection of mycobacteria-facing novel and uncultured pathogens, 173 Tortoli, 1996, High-performance liquid chromatography and identification of mycobacteria, Rev Med Microbiol, 7, 207, 10.1097/00013542-199610000-00003 Tortoli, 1996, Isolation of an unusual mycobacterium from an AIDS patient, J Clin Microbiol, 34, 2316, 10.1128/JCM.34.9.2316-2319.1996 Rastogi, 2003, An introduction to mycobacterial taxonomy, structure, drug resistance, and pathogenesis, 89 Korsak, 1972, Mycobacteria with pink pigment, Ann Inst Pasteur, 122, 31 Wayne, 1996, Semantide- and chemotaxonomy-based analyses of some problematic phenotypic clusters of slowly growing mycobacteria, a cooperative study of the International Working Group on Mycobacterial Taxonomy, Int J Syst Bact, 46, 280, 10.1099/00207713-46-1-280 Kusunoki, 1992, Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov., Int J Syst Bact, 42, 240, 10.1099/00207713-42-2-240 Springer, 1996, Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods, J Clin Microbiol, 34, 296, 10.1128/JCM.34.2.296-303.1996 Kazda, 1993, Mycobacterium hiberniae sp. nov., Int J Syst Bact, 43, 352, 10.1099/00207713-43-2-352 Marranzano, 1978, Atypical mycobacteria isolated from the water of the Simeto River at Catania, Boll Ist Sieroter Milan, 57, 128 Drancourt, 2000, 16S ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates, J Clin Microbiol, 38, 3623, 10.1128/JCM.38.10.3623-3630.2000 Tortoli, 2001, Burden of unidentifiable mycobacteria in a reference laboratory, J Clin Microbiol, 39, 4058, 10.1128/JCM.39.11.4058-4065.2001 Legrand, 2000, Le complexe Mycobacterium avium–intracellulare: marqueurs phénotypiques et génotypiques et les bases moléculaires de la transmision inter-espèces, Bull Soc Pathol Exot, 93, 182 Rastogi, 1992, 8th Forum in microbiology, mycobacteria and AIDS: epidemiological and genetic markers, virulence factors and interactions with immune system, Res Microbiol, 143, 361, 10.1016/0923-2508(92)90046-Q Butler, 2001, Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species, Clin. Microbiol. Rev., 14, 704, 10.1128/CMR.14.4.704-726.2001