Tandem mass tag (TMT) quantitative proteomics and phosphoproteomic of Takifugu rubripes infected with Cryptocaryon irritans

Ahmad, 2017, Nitric oxide molecule and human cancers, Int. J. Biochem. Physiol., 2 Arretero, 2010, Integrativegenomic and proteomic analyses identify targets for Lkb l-deficient metastatic lung tumors, Cancer Cell, 17, 547, 10.1016/j.ccr.2010.04.026 Bonavida, 2015 Brenner, 1993, Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome, Nature, 366, 265, 10.1038/366265a0 Burke, 2013, The yin and yang of nitric oxide in cancer progression, Carcinogenesis, 34, 503, 10.1093/carcin/bgt034 Chan, 1993, Zinc finger-like motifs in rat ribosomal proteins S27 and S29, Nucleic Acids Res., 21, 649, 10.1093/nar/21.3.649 Chen, 2009, A fish antimicrobial peptide, tilapia hepcidin TH2-3, shows potent antitumor activity against human fibrosarcoma cells, Peptides, 30, 1636, 10.1016/j.peptides.2009.06.009 Chen, 2022, Proteomic and phosphoproteomic analyses reveal gibel carp responses to cyprinid herpesvirus 2 infection, J. Proteome Res., 21, 1961, 10.1021/acs.jproteome.2c00253 Chernysh, 2002, Antiviral and antitumor peptides from insects, Proc. Natl. Acad. Sci., 99, 12628, 10.1073/pnas.192301899 Chin, 2000, Calmodulin: a prototypical calcium sensor, Trends Cell Biol., 10, 322, 10.1016/S0962-8924(00)01800-6 Dalla, 2019, Emerging role of eukaryote ribosomes in translational control, Int. J. Mol. Sci., 20, 1226, 10.3390/ijms20051226 Fernandez-Pol, 1993, A growth factor-inducible gene encodes a novel nuclear protein with zinc finger structure, J. Biol. Chem., 268, 21198, 10.1016/S0021-9258(19)36910-8 Frédéric, 2006, Phosphoprotein analysis: from proteins to proteomes, Proteome Sci., 4, 15, 10.1186/1477-5956-4-15 Huang, 2009, Regulation of JNK and p38 MAPK in the immune system: signal integration, propagation and termination, Cytokine, 48, 161, 10.1016/j.cyto.2009.08.002 Huang, 2011, Roles of stress-activated protein kinases in the replication of Singapore grouper iridovirus and regulation of the inflammatory responses in grouper cells, J. Gen. Virol., 92, 1292, 10.1099/vir.0.029173-0 Kim, 2005, Molecular cloning and expression analysis of two hepcidin genes from olive flounder Paralichthys olivaceus, Biosci. Biotechnol. Biochem., 69, 1411, 10.1271/bbb.69.1411 Kruse, 2017, Mitoehondrial phosphoproteomics of mammalian tissues, Mitochondrion., 33, 45, 10.1016/j.mito.2016.08.004 Kursula, 2014, The many structural faces of calmodulin: a multitasking molecular jackknife, Amino Acids, 46, 2295, 10.1007/s00726-014-1795-y Lieske, 2015, Targeting tuberculosis and HIV infection-specific regulatory T cells with MEK/ERK signalling pathway inhibitors, PLoS ONE, 10, 739, 10.1371/journal.pone.0141903 Liu, 2019, Phosphoproteomic analyses of kidneys of Atlantic salmon infected with Aeromonas salmonicida, Sci. Rep., 9, 1 Luyang, 2022, Enrichment and proteomic identification of Cryptosporidium parvum oocyst wall, Parasit. Vectors, 15, 335, 10.1186/s13071-022-05448-8 Ma, 2016, Ultrastructure observation on the cells at different life history stages of Cryptocaryon irritans (Ciliophora: Prostomatea), a parasitic ciliate of marine fishes, Parasitology, 143, 1479, 10.1017/S0031182016001074 Meng-Qi, 2019, RPS27, a sORF-encoded polypeptide, functions antivirally by activating the NF-κB pathway and interacting with viral envelope proteins in shrimp, Front. Immunol., 10, 2763, 10.3389/fimmu.2019.02763 Moreno, 2003, Calcium regulation in protozoan parasites, Curr. Opin. Microbiol., 6, 359, 10.1016/S1369-5274(03)00091-2 Mruk, 2012, Structural insights into neuronal K1 channel-calmodulin complexes, Proc. Natl. Acad. Sci. U. S. A., 109, 13579, 10.1073/pnas.1207606109 Needham, E. J., Hingst, J. R., Parker, B.L et al., “Personalized phosphoproteomics identifies functional signalling,” Nat. Biotechnol., 40(4), 576–584. Peng, 2019, Comparative transcriptomic analysis reveals the gene expression profiles in the liver and gill of Japanese pufferfish (Takifugu rubripes) in response to Vibrio harveyi infection, Fish Shellfish Immunol., 90, 308, 10.1016/j.fsi.2019.04.304 Petra, 2023, Serum and urine profiling by high-throughput TMT-based proteomics for the investigation of renal dysfunction in canine babesiosis, J. Proteome, 270, 104735, 10.1016/j.jprot.2022.104735 Pironet, 2000, Treatments for ectoparasites and diseases in captive Western Australian dhufish, Aquac. Int., 8, 349, 10.1023/A:1009257011431 Qiao, 2017, Pathogenic bacterium Vibrio harveyi: an endosymbiont in the marine parasitic ciliate protozoan Cryptocaryon irritans, Acta Oceanol. Sin., 36, 115, 10.1007/s13131-017-1050-y Söderholm, 2016, Phosphoproteomics to characterize host response during influenza A virus infection of human macrophages, Mol. Cell. Proteomics, 15, 3203, 10.1074/mcp.M116.057984 Sosz, 2016, Quantitative body fluid proteomics in medicine—a focus on minimal invasiveness, J. Proteome, 153, 30, 10.1016/j.jprot.2016.08.009 Sun, 2016, beta-Arrestins negatively regulate the toll pathway in shrimp by preventing dorsal translocation and inhibiting dorsal transcriptional activity, J. Biol. Chem., 291, 7488, 10.1074/jbc.M115.698134 Tassanakajon, 2018, Shrimp humoral responses against pathogens: antimicrobial peptides and melanization, Dev. Comp. Immunol., 80, 81, 10.1016/j.dci.2017.05.009 Tsien, 1990, Calcium channels, stores, and oscillations, Annu. Rev. Cell Biol., 6, 715, 10.1146/annurev.cb.06.110190.003435 Tun, 2002, Pathological changes induced by three myxosporeans in the intestine of cultured tiger puffer, Takifugu rubripes (Temminck and Schlegel), J. Fish Dis., 25, 63, 10.1046/j.1365-2761.2002.00333.x Vanini, 2015, The dual role of iNOS in cancer, Redox Biol., 6, 334, 10.1016/j.redox.2015.08.009 Wong, 1993, Ubiquitin-ribosomal protein S27a gene overexpressed in human colorectal carcinoma is an early growth response gene, Cancer Res., 53, 1916 Yambot, 2003, Characterization of Cryptocaryon irritans, a parasite isolated from marine fishes in Taiwan, Dis. Aquat. Org., 54, 147, 10.3354/dao054147 Yang, 2003, Transcriptional regulation by the MAP kinase signalling cascades, Gene, 320, 3, 10.1016/S0378-1119(03)00816-3 Yang, 2012, Knockdown of metallopanstimulin-1 inhibits NF-kappaB signalling at different levels: the role of apoptosis induction of gastric cancer cells, Int. J. Cancer, 130, 2761, 10.1002/ijc.26331 Yanwei, 2021, Cryptocaryon irritans (Brown, 1951) is a serious threat to aquaculture of marine fish, Rev. Aquac., 14, 218 Yongle, 2022, Essential functions of calmodulin and identification of its proximal interacting proteins in tachyzoite-stage toxoplasma gondii via BioID technology, Microbiol. Spectr., e0136322 Zhang, 2016, CaMKII is a RIP3 substrate mediating ischemia- and oxidative stress-induced myocardial necroptosis, Nat. Med., 22, 175, 10.1038/nm.4017 Zhao, 2015, Early second-trimester plasma protein profiling using multiplexed isobaric tandem mass tag (TMT) labeling predicts gestational diabetes mellitus, Acta Diabetol., 52, 1103, 10.1007/s00592-015-0796-y Zheng, 2020, Characteristics delineation of piscidin 5 like from Larimichthys crocea with evidence for the potent antiparasitic activity, Dev. Comp. Immunol., 113, 10.1016/j.dci.2020.103778