Systematic Analysis of Viral and Cellular MicroRNA Targets in Cells Latently Infected with Human γ-Herpesviruses by RISC Immunoprecipitation Assay
Tài liệu tham khảo
Baek, 2008, The impact of microRNAs on protein output, Nature, 455, 64, 10.1038/nature07242
Bandi, 2009, miR-15a and miR-16 are implicated in cell cycle regulation in a Rb-dependent manner and are frequently deleted or down-regulated in non-small cell lung cancer, Cancer Res., 69, 5553, 10.1158/0008-5472.CAN-08-4277
Baroni, 2008, Advances in RIP-chip analysis: RNA-binding protein immunoprecipitation-microarray profiling, Methods Mol. Biol., 419, 93, 10.1007/978-1-59745-033-1_6
Barozzi, 2007, B cells and herpesviruses: a model of lymphoproliferation, Autoimmun. Rev., 7, 132, 10.1016/j.autrev.2007.02.018
Beitzinger, 2007, Identification of human microRNA targets from isolated argonaute protein complexes, RNA Biol., 4, 76, 10.4161/rna.4.2.4640
Bellot, 2007, TOM22, a core component of the mitochondria outer membrane protein translocation pore, is a mitochondrial receptor for the proapoptotic protein Bax, Cell Death Differ., 14, 785, 10.1038/sj.cdd.4402055
Cai, 2005, Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells, Proc. Natl. Acad. Sci. USA, 102, 5570, 10.1073/pnas.0408192102
Cai, 2006, Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed, PLoS Pathog., 2, e23, 10.1371/journal.ppat.0020023
Carbone, 1996, Kaposi's sarcoma-associated herpesvirus DNA sequences in AIDS-related and AIDS-unrelated lymphomatous effusions, Br. J. Haematol., 94, 533, 10.1046/j.1365-2141.1996.d01-1826.x
Carbone, 2008, EBV-associated lymphoproliferative disorders: classification and treatment, Oncologist, 13, 577, 10.1634/theoncologist.2008-0036
Choy, 2008, An Epstein-Barr virus-encoded microRNA targets PUMA to promote host cell survival, J. Exp. Med., 205, 2551, 10.1084/jem.20072581
Delecluse, 2007, Epstein Barr virus-associated tumours: an update for the attention of the working pathologist, J. Clin. Pathol., 60, 1358, 10.1136/jcp.2006.044586
Dölken, 2008, High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay, RNA, 14, 1959, 10.1261/rna.1136108
Dourmishev, 2003, Molecular genetics of Kaposi's sarcoma-associated herpesvirus (human herpesvirus-8) epidemiology and pathogenesis, Microbiol. Mol. Biol. Rev., 67, 175, 10.1128/MMBR.67.2.175-212.2003
Easow, 2007, Isolation of microRNA targets by miRNP immunopurification, RNA, 13, 1198, 10.1261/rna.563707
Friedel, 2009, Conserved principles of mammalian transcriptional regulation revealed by RNA half-life, Nucleic Acids Res., 37, e115, 10.1093/nar/gkp542
Fu, 2009, Suitable reference genes for real-time PCR in human HBV-related hepatocellular carcinoma with different clinical prognoses, BMC Cancer, 9, 49, 10.1186/1471-2407-9-49
Gaidano, 1997, Association of Kaposi's sarcoma-associated herpesvirus-positive primary effusion lymphoma with expression of the CD138/syndecan-1 antigen, Blood, 90, 4894
Gatto, 2008, Epstein-Barr virus latent membrane protein 1 trans-activates miR-155 transcription through the NF-kappaB pathway, Nucleic Acids Res., 36, 6608, 10.1093/nar/gkn666
Gorlich, 1997, A novel class of RanGTP binding proteins, J. Cell Biol., 138, 65, 10.1083/jcb.138.1.65
Gottwein, 2007, A viral microRNA functions as an orthologue of cellular miR-155, Nature, 450, 1096, 10.1038/nature05992
Grundhoff, 2006, A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses, RNA, 12, 733, 10.1261/rna.2326106
Hendrickson, 2008, Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance, PLoS ONE, 3, e2126, 10.1371/journal.pone.0002126
Karginov, 2007, A biochemical approach to identifying microRNA targets, Proc. Natl. Acad. Sci. USA, 104, 19291, 10.1073/pnas.0709971104
Keene, 2006, RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts, Nat. Protoc., 1, 302, 10.1038/nprot.2006.47
Kertesz, 2007, The role of site accessibility in microRNA target recognition, Nat. Genet., 39, 1278, 10.1038/ng2135
Landgraf, 2007, A mammalian microRNA expression atlas based on small RNA library sequencing, Cell, 129, 1401, 10.1016/j.cell.2007.04.040
Lei, 2010, Regulation of NF-kappaB inhibitor IkappaBalpha and viral replication by a KSHV microRNA, Nat. Cell Biol., 12, 193, 10.1038/ncb2019
Liu, 2008, miR-16 family induces cell cycle arrest by regulating multiple cell cycle genes, Nucleic Acids Res., 36, 5391, 10.1093/nar/gkn522
Marshall, 2007, Conservation of virally encoded microRNAs in Kaposi sarcoma-associated herpesvirus in primary effusion lymphoma cell lines and in patients with Kaposi sarcoma or multicentric Castleman disease, J. Infect. Dis., 195, 645, 10.1086/511434
Mrazek, 2007, Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells, Nucleic Acids Res., 35, e73, 10.1093/nar/gkm244
Nachmani, 2009, Diverse herpesvirus microRNAs target the stress-induced immune ligand MICB to escape recognition by natural killer cells, Cell Host Microbe, 5, 376, 10.1016/j.chom.2009.03.003
Nador, 1996, Primary effusion lymphoma: a distinct clinicopathologic entity associated with the Kaposi's sarcoma-associated herpes virus, Blood, 88, 645, 10.1182/blood.V88.2.645.bloodjournal882645
Pauley, 2008, Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients, Arthritis Res. Ther., 10, R101, 10.1186/ar2493
Pfeffer, 2004, Identification of virus-encoded microRNAs, Science, 304, 734, 10.1126/science.1096781
Pfeffer, 2005, Identification of microRNAs of the herpesvirus family, Nat. Methods, 2, 269, 10.1038/nmeth746
Rehmsmeier, 2004, Fast and effective prediction of microRNA/target duplexes, RNA, 10, 1507, 10.1261/rna.5248604
Renne, 1996, Lytic growth of Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8) in culture, Nat. Med., 2, 342, 10.1038/nm0396-342
Rudel, 2008, A multifunctional human Argonaute2-specific monoclonal antibody, RNA, 14, 1244, 10.1261/rna.973808
Saeki, 2000, Identification of mammalian TOM22 as a subunit of the preprotein translocase of the mitochondrial outer membrane, J. Biol. Chem., 275, 31996, 10.1074/jbc.M004794200
Samols, 2005, Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirus, J. Virol., 79, 9301, 10.1128/JVI.79.14.9301-9305.2005
Samols, 2007, Identification of cellular genes targeted by KSHV-encoded microRNAs, PLoS Pathog., 3, e65, 10.1371/journal.ppat.0030065
Schulz, 2006, The pleiotropic effects of Kaposi's sarcoma herpesvirus, J. Pathol., 208, 187, 10.1002/path.1904
Selbach, 2008, Widespread changes in protein synthesis induced by microRNAs, Nature, 455, 58, 10.1038/nature07228
Skalsky, 2007, Kaposi's sarcoma-associated herpesvirus encodes an ortholog of miR-155, J. Virol., 81, 12836, 10.1128/JVI.01804-07
Stern-Ginossar, 2007, Host immune system gene targeting by a viral miRNA, Science, 317, 376, 10.1126/science.1140956
Stern-Ginossar, 2008, Human microRNAs regulate stress-induced immune responses mediated by the receptor NKG2D, Nat. Immunol., 9, 1065, 10.1038/ni.1642
Tang, 2009, MicroRNA-146A contributes to abnormal activation of the type I interferon pathway in human lupus by targeting the key signaling proteins, Arthritis Rheum., 60, 1065, 10.1002/art.24436
Vigorito, 2007, microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells, Immunity, 27, 847, 10.1016/j.immuni.2007.10.009
Wang, 2004, Early activation of the Kaposi's sarcoma-associated herpesvirus RTA, RAP, and MTA promoters by the tetradecanoyl phorbol acetate-induced AP1 pathway, J. Virol., 78, 4248, 10.1128/JVI.78.8.4248-4267.2004
Weinmann, 2009, Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs, Cell, 136, 496, 10.1016/j.cell.2008.12.023
Xia, 2008, EBV microRNAs in primary lymphomas and targeting of CXCL-11 by ebv-mir-BHRF1-3, Cancer Res., 68, 1436, 10.1158/0008-5472.CAN-07-5126
Yang, 2009, Identification of novel genes that mediate innate immunity using inbred mice, Genetics, 183, 1535, 10.1534/genetics.109.107540
Yang, 2009, Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach, Proteomics, 9, 1374, 10.1002/pmic.200800551
Yano, 2000, Identification and functional analysis of human Tom22 for protein import into mitochondria, Mol. Cell. Biol., 20, 7205, 10.1128/MCB.20.19.7205-7213.2000
Ye, 2008, Kaposi's sarcoma-associated herpesvirus latent gene vFLIP inhibits viral lytic replication through NF-kappaB-mediated suppression of the AP-1 pathway: a novel mechanism of virus control of latency, J. Virol., 82, 4235, 10.1128/JVI.02370-07
Zhu, 2009, Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas, J. Virol., 83, 3333, 10.1128/JVI.01689-08
Ziegelbauer, 2009, Tandem array-based expression screens identify host mRNA targets of virus-encoded microRNAs, Nat. Genet., 41, 130, 10.1038/ng.266