Successional development of wood-inhabiting fungi associated with dominant tree species in a natural temperate floodplain forest
Tài liệu tham khảo
Arnstadt, 2016, Dynamics of fungal community composition, decomposition and resulting deadwood properties in logs of Fagus sylvatica, Picea abies and Pinus sylvestris, For. Ecol. Manag., 382, 129, 10.1016/j.foreco.2016.10.004
Baldrian, 2006, Fungal laccases–occurrence and properties, FEMS Microbiol. Rev., 30, 215, 10.1111/j.1574-4976.2005.00010.x
Baldrian, 2017, Forest microbiome: diversity, complexity and dynamics, FEMS Microbiol. Rev., 41, 109
Baldrian, 2021, High-throughput sequencing view on the magnitude of global fungal diversity, Fungal Divers.
Baldrian, 2016, Fungi associated with decomposing deadwood in a natural beech-dominated forest, Fungal Ecol, 23, 109, 10.1016/j.funeco.2016.07.001
Bani, 2018, The role of microbial community in the decomposition of leaf litter and deadwood, Appl. Soil Ecol., 126, 75, 10.1016/j.apsoil.2018.02.017
Bengtsson-Palme, 2013, Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data, Methods Ecol. Evol., 4, 914, 10.1111/2041-210X.12073
Blaser, 2013, Effects of forest management on the diversity of deadwood-inhabiting fungi in Central European forests, For. Ecol. Manag., 304, 42, 10.1016/j.foreco.2013.04.043
Błońska, 2017, Effect of deadwood of different tree species in various stages of decomposition on biochemical soil properties and carbon storage, Ecol. Res., 32, 193, 10.1007/s11284-016-1430-3
Błońska, 2019, Carbon and nitrogen stock in deadwood biomass in natural temperate forest along a soil moisture gradient, Plant Biosyst., 154, 213, 10.1080/11263504.2019.1587538
Boddy, 2000, Interspecific combative interactions between wood-decaying basidiomycetes, FEMS Microbiol. Ecol., 31, 185, 10.1111/j.1574-6941.2000.tb00683.x
Boddy, 2016, Fungal ecology: principles and mechanisms of colonization and competition by saprotrophic fungi, Microbiol. Spectr., 4, 4, 10.1128/microbiolspec.FUNK-0019-2016
Carter, 1991
De Meo, 2019, Direct and indirect assessment of carbon stock in deadwood: comparison in Calabrian Pine (Pinus brutia Ten. subsp. brutia) forests in Italy, For. Sci., 65, 460
Doerfler, 2017, Success of a deadwood enrichment strategy in production forests depends on stand type and management intensity, For. Ecol. Manag., 400, 607, 10.1016/j.foreco.2017.06.013
Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604
Edman, 2004, Local dispersal sources strongly affect colonization patterns of wood-decaying fungi on spruce logs, Ecol. Appl., 14, 893, 10.1890/03-5103
Eichlerová, 2015, Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi, Fungal Ecol, 13, 10, 10.1016/j.funeco.2014.08.002
Franklin, 2009, Importance of spatially structured environmental heterogeneity in controlling microbial community composition at small spatial scales in an agricultural field, Soil Biol. Biochem., 41, 1833, 10.1016/j.soilbio.2009.06.003
Fukasawa, 2009, Dynamics of physicochemical properties and occurrence of fungal fruit bodies during decomposition of coarse woody debris of Fagus crenata, J. For. Res., 14, 20, 10.1007/s10310-008-0098-0
Goodell, 2008, Fungal decay of wood: soft rot-brown rot-white rot, 982, 9
Goodell, 2020, Fungal degradation of wood: emerging data, new insights and changing perceptions, Coatings, 10, 1210, 10.3390/coatings10121210
Gorai, 2018, Determination of optimum temperature and pH for mycelial growth of Pleurotus spp/strains, Int. J. Microbiol. Res., 10, 1287, 10.9735/0975-5276.10.6.1287-1289
Griffiths, 2019, Termites can decompose more than half of deadwood in tropical rainforest, Curr. Biol., 29, R118, 10.1016/j.cub.2019.01.012
Guillaumin, 2013, Armillaria root rots, 159
Heilmann-Clausen, 2005, Inhibition and stimulation effects in communities of wood decay fungi: exudates from colonized wood influence growth by other species, Microb. Ecol., 49, 399, 10.1007/s00248-004-0240-2
Hekkala, 2016, Restoring volume, diversity and continuity of deadwood in boreal forests, Biodivers. Conserv., 25, 1107, 10.1007/s10531-016-1112-z
Hendry, 1993, Interactions between callus cultures of European beech, indigenous ascomycetes and derived fungal extracts, New Phytol., 123, 421, 10.1111/j.1469-8137.1993.tb03753.x
Hendry, 1998, Strip-cankering of beech (Fagus sylvatica): pathology and distribution of symptomatic trees, New Phytol., 140, 549, 10.1111/j.1469-8137.1998.00282.x
Hiscox, 2015, Priority effects during fungal community establishment in beech wood, ISME J., 9, 2246, 10.1038/ismej.2015.38
Hoppe, 2016, Linking molecular deadwood-inhabiting fungal diversity and community dynamics to ecosystem functions and processes in Central European forests, Fungal Divers., 77, 367, 10.1007/s13225-015-0341-x
Ihrmark, 2012, New primers to amplify the fungal ITS2 region – evaluation by 454-sequencing of artificial and natural communities, FEMS Microbiol. Ecol., 82, 666, 10.1111/j.1574-6941.2012.01437.x
Jacobs, 2012, Linking deadwood-associated beetles and fungi with wood decomposition rates in managed black spruce forests, Can. J. For. Res., 42, 1477, 10.1139/x2012-075
Juutilainen, 2011, Size matters in studies of dead wood and wood-inhabiting fungi, Fungal Ecol, 4, 342, 10.1016/j.funeco.2011.05.004
Kahl, 2017, Wood decay rates of 13 temperate tree species in relation to wood properties, enzyme activities and organismic diversities, For. Ecol. Manag., 391, 86, 10.1016/j.foreco.2017.02.012
Kaisermann, 2015, Fungal communities are more sensitive indicators to non-extreme soil moisture variations than bacterial communities, Appl. Soil Ecol., 86, 158, 10.1016/j.apsoil.2014.10.009
Köster, 2015, Dead wood basic density, and the concentration of carbon and nitrogen for main tree species in managed hemiboreal forests, For. Ecol. Manag., 354, 35, 10.1016/j.foreco.2015.06.039
Krah, 2018, Independent effects of host and environment on the diversity of wood-inhabiting fungi, J. Ecol., 106, 1428
Kubiak, 2017, Armillaria pathogenesis under climate changes, Forests, 8, 100, 10.3390/f8040100
Larrieu, 2014, Deadwood and tree microhabitat dynamics in unharvested temperate mountain mixed forests: a life-cycle approach to biodiversity monitoring, For. Ecol. Manag., 334, 163, 10.1016/j.foreco.2014.09.007
Lassauce, 2011, Deadwood as a surrogate for forest biodiversity: meta-analysis of correlations between deadwood volume and species richness of saproxylic organisms, Ecol. Indicat., 11, 1027, 10.1016/j.ecolind.2011.02.004
Lindahl, 2013, Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide, New Phytol., 199, 288, 10.1111/nph.12243
López-Mondéjar, 2018, Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling, ISME J., 12, 1768, 10.1038/s41396-018-0084-2
Luyssaert, 2008, Old-growth forests as global carbon sinks, Nature, 455, 213, 10.1038/nature07276
Moreno-Fernández, 2020, Analyzing the dynamics of the deadwood carbon pool in Spain through the European Level I Monitoring Programme, For. Ecol. Manag., 463, 118020, 10.1016/j.foreco.2020.118020
Müller, 2020, Primary determinants of communities in deadwood vary among taxa but are regionally consistent, Oikos, 129, 1579, 10.1111/oik.07335
Nilsson, 2019, The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications, Nucleic Acids Res., 47, D259, 10.1093/nar/gky1022
Noll, 2016, Fungal biomass and extracellular enzyme activities in coarse woody debris of 13 tree species in the early phase of decomposition, For. Ecol. Manag., 378, 181, 10.1016/j.foreco.2016.07.035
Nordén, 2020, Ten principles for conservation translocations of threatened wood-inhabiting fungi, Fungal Ecol, 44, 100919, 10.1016/j.funeco.2020.100919
Odriozola, 2020, Fungal communities are important determinants of bacterial community composition in deadwood, mSystems, 5, e01017
Oksanen, 2016
Paillet, 2010, Biodiversity differences between managed and unmanaged forests: meta-analysis of species richness in Europe, Conserv. Biol., 24, 101, 10.1111/j.1523-1739.2009.01399.x
Palmer, 2018, Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data, PeerJ, 6, 10.7717/peerj.4925
Pan, 2011, A large and persistent carbon sink in the world's forests, Science, 333, 988, 10.1126/science.1201609
Põlme, 2020, FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles, Fungal Divers., 105, 1, 10.1007/s13225-020-00466-2
Přívětivý, 2017, Deadwood density and moisture variation in a natural temperate Spruce-Fir-Beech forest, Preprints, 2017050215
Přívětivý, 2016, How do environmental conditions affect the deadwood decomposition of European beech (Fagus sylvatica L.)?, For. Ecol. Manag., 381, 177, 10.1016/j.foreco.2016.09.033
Purahong, 2018, Application of next-generation sequencing technologies to conservation of wood-inhabiting fungi, Conserv. Biol., 33, 716, 10.1111/cobi.13240
Purahong, 2018, Molecular evidence strongly supports deadwood-inhabiting fungi exhibiting unexpected tree species preferences in temperate forests, ISME J., 12, 289, 10.1038/ismej.2017.177
Purahong, 2018, Determinants of deadwood-inhabiting fungal communities in temperate forests: molecular evidence from a large scale deadwood decomposition experiment, Front. Microbiol., 9, 2120, 10.3389/fmicb.2018.02120
Rayner, 1988
Rejšek, 2007, Acid phosphomonoesterase activity in floodplain forest soils, Soil Water Res., 2, 67, 10.17221/2116-SWR
Rinne, 2017, Accumulation rates and sources of external nitrogen in decaying wood in a Norway spruce dominated forest, Funct. Ecol., 31, 530, 10.1111/1365-2435.12734
Rinne-Garmston, 2019, Carbon flux from decomposing wood and its dependency on temperature, wood N2 fixation rate, moisture and fungal composition in a Norway spruce forest, Global Change Biol., 25, 1852, 10.1111/gcb.14594
Rolshausen, 2006, A reassessment of the species concept in Eutypa lata, the causal agent of Eutypa dieback of grapevine, Phytopathology, 96, 369, 10.1094/PHYTO-96-0369
Rondeux, 2010, Review of indicators and field methods for monitoring biodiversity within national forest inventories, Core variable: Deadwood. Environ. Monit. Assess., 164, 617
Šamonil, 2017, Breakage or uprooting: how tree death type affects hillslope processes in old-growth temperate forests, Geomorphology, 299, 76, 10.1016/j.geomorph.2017.09.023
Šamonil, 2020, Convergence, divergence or chaos? Consequences of tree trunk decay for pedogenesis and the soil microbiome in a temperate natural forest, Geoderma, 376, 114499, 10.1016/j.geoderma.2020.114499
Šenhofa, 2020, Deadwood characteristics in mature and old-growth birch stands and their implications for carbon storage, Forests, 11, 536, 10.3390/f11050536
Sherman, 2014, Fungal community-plant litter decomposition relationships along a climate gradient, Pedosphere, 24, 437, 10.1016/S1002-0160(14)60030-8
Shi, 1993, Multivariate data analysis in palaeoecology and palaeobiogeography - a review, Palaeogeogr. Palaeoclimatol. Palaeoecol., 105, 199, 10.1016/0031-0182(93)90084-V
Siitonen, 2000, Coarse woody debris and stand characteristics in mature managed and old-growth boreal mesic forests in southern Finland, For. Ecol. Manag., 128, 211, 10.1016/S0378-1127(99)00148-6
Sipos, 2018, Armillaria, Curr. Biol., 28, R297, 10.1016/j.cub.2018.01.026
Šnajdr, 2008, Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil, Soil Biol. Biochem., 40, 2068, 10.1016/j.soilbio.2008.01.015
Song, 2017, Fungal endophytes as priority colonizers initiating wood decomposition, Funct. Ecol., 31, 407, 10.1111/1365-2435.12735
Stokland, 2012
Štursová, 2020, Production of fungal mycelia in a temperate coniferous forest shows distinct seasonal patterns, J. Fungi, 6, 190, 10.3390/jof6040190
Štursová, 2020, Long-term decomposition of litter in the montane forest and the definition of fungal traits in the successional space, Fungal Ecol, 46, 100913, 10.1016/j.funeco.2020.100913
Tláskal, 2021, Complementary roles of wood-inhabiting fungi and bacteria facilitate deadwood decomposition, mSystems, 6, 10.1128/mSystems.01078-20
Tláskal, 2017, Bacteria associated with decomposing dead wood in a natural temperate forest, FEMS Microbiol. Ecol., 93, fix157, 10.1093/femsec/fix157
Ulyshen, 2016, Wood decomposition as influenced by invertebrates, Biol. Rev., 91, 70, 10.1111/brv.12158
Unar, 2008, The evolution of natural floodplain forests in South Moravia between 1973 and 2005, J. For. Sci., 54, 340
Větrovský, 2015, An in-depth analysis of actinobacterial communities shows their high diversity in grassland soils along a gradient of mixed heavy metal contamination, Biol. Fertil. Soils, 51, 827, 10.1007/s00374-015-1029-9
Větrovský, 2018, Seed 2: a user-friendly platform for amplicon high-throughput sequencing data analyses, Bioinformatics, 34, 2292, 10.1093/bioinformatics/bty071
Větrovský, 2016, The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities, Mol. Ecol. Resour., 16, 388, 10.1111/1755-0998.12456
Větrovský, 2020, GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies, Sci. Data, 7, 228, 10.1038/s41597-020-0567-7
Vítková, 2018, Deadwood management in Central European forests: key considerations for practical implementation, For. Ecol. Manag., 429, 394, 10.1016/j.foreco.2018.07.034
Vrška, 2006
Vrška, 2015, Deadwood residence time in alluvial hardwood temperate forests - a key aspect of biodiversity conservation, For. Ecol. Manag., 357, 33, 10.1016/j.foreco.2015.08.006
Weslien, 2011, Long-term priority effects among insects and fungi colonizing decaying wood, J. Anim. Ecol., 80, 1155, 10.1111/j.1365-2656.2011.01860.x
White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315
Zeller, 2019, Effect of forest structure on stand productivity in Central European forests depends on developmental stage and tree species diversity, For. Ecol. Manag., 434, 193, 10.1016/j.foreco.2018.12.024
Zuo, 2014, Diversity of macrodetritivores in dead wood is influenced by tree species, decay stage and environment, Soil Biol. Biochem., 78, 288, 10.1016/j.soilbio.2014.08.010