Study on the influence of soil microbial community on the long-term heavy metal pollution of different land use types and depth layers in mine

Abollino, 2002, Heavy metals in agricultural soils from Piedmont, Italy. Distribution, speciation and chemometric data treatment, Chemosphere, 49, 545, 10.1016/S0045-6535(02)00352-1

Anderson, 2003, Stimulating the in situ activity of geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer, Appl. Environ. Microbiol, 69, 5884, 10.1128/AEM.69.10.5884-5891.2003

Brockett, 2012, Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada, Soil Biol. Biochem., 44, 9, 10.1016/j.soilbio.2011.09.003

Chao, 2016, Structure, variation, and co-occurrence of soil microbial communities in abandoned sites of a rare earth elements mine, Environ. Sci. Technol., 50, 11481, 10.1021/acs.est.6b02284

Chodak, 2013, Diversity of microorganisms from forest soils differently polluted with heavy metals, Appl. Soil Ecol., 64, 7, 10.1016/j.apsoil.2012.11.004

Du Laing, 2009, Trace metal behaviour in estuarine and riverine floodplain soils and sediments: a review, Sci. Total Environ., 407, 3972, 10.1016/j.scitotenv.2008.07.025

Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461

Eilers, 2012, Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil, Soil Biol. Biochem., 50, 58, 10.1016/j.soilbio.2012.03.011

Feris, 2003, Differences in hyporheic-zone microbial community structure along a heavy-metal contamination gradient, Appl. Environ. Microbiol., 69, 5563, 10.1128/AEM.69.9.5563-5573.2003

Fierer, 2008, The influence of sex, handedness, and washing on the diversity of hand surface bacteria, Proc. Natl. Acad. Sci. USA, 105, 17994, 10.1073/pnas.0807920105

Frossard, 2017, Tolerance of the forest soil microbiome to increasing mercury concentrations, Soil Biol. Biochem., 105, 162, 10.1016/j.soilbio.2016.11.016

Frostegård, 1993, Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals, Appl. Environ. Microbiol., 59, 3605, 10.1128/AEM.59.11.3605-3617.1993

Gołębiewski, 2014, 16S rDNA pyrosequencing analysis of bacterial community in heavy metals polluted soils, Microb. Ecol., 67, 635, 10.1007/s00248-013-0344-7

Hamamura, 2006, Microbial population dynamics associated with crude-oil biodegradation in diverse soils, Appl. Environ. Microbiol., 72, 6316, 10.1128/AEM.01015-06

Hu, 2015, Relative roles of deterministic and stochastic processes in driving the vertical distribution of bacterial communities in a permafrost core from the Qinghai-Tibet Plateau, China, PLoS One, 10, 1, 10.1371/journal.pone.0145747

Huang, 2018, Heavy metal pollution and health risk assessment of agricultural soils in a typical peri-urban area in southeast China, J. Environ. Manag., 207, 159, 10.1016/j.jenvman.2017.10.072

Kaiser, 2015, Stabilization of organic matter by soil minerals — investigations of density and particle‐size fractions from two acid forest soils, J. Plant Nutr. Soil Sci. = Z. fuer Pflanz. und Bodenkd., 165, 451, 10.1002/1522-2624(200208)165:4<451::AID-JPLN451>3.0.CO;2-B

Karelová, 2011, The isolation of heavy-metal resistant culturable bacteria and resistance determinants from a heavy-metal-contaminated site, Biologia, 66, 18, 10.2478/s11756-010-0145-0

Kenarova, 2014, Community level physiological profiles of bacterial communities inhabiting uranium mining impacted sites, Ecotoxicol. Environ. Saf., 100, 226, 10.1016/j.ecoenv.2013.11.012

Kolton, 2011, Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants, Appl. Environ. Microbiol., 77, 4924, 10.1128/AEM.00148-11

Kowalska, 2016, Soil pollution indices conditioned by medieval metallurgical activity – a case study from Krakow (Poland), Environ. Pollut., 218, 1023, 10.1016/j.envpol.2016.08.053

Kuang, 2013, Contemporary environmental variation determines microbial diversity patterns in acid mine drainage, Isme J., 7, 1038, 10.1038/ismej.2012.139

Kunito, 1999, Influences of copper forms on the toxicity to microorganisms in soils, Ecotoxicol. Environ. Saf., 44, 174, 10.1006/eesa.1999.1820

Lee, 2015, High resolution depth distribution of bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy, Front. Microbiol., 6

Leininger, 2006, Archaea predominate among ammonia-oxidizing prokaryotes in soils, Nature, 442, 806, 10.1038/nature04983

Li, 2017, Vertical distribution of microbial communities in soils contaminated by chromium and perfluoroalkyl substances, Sci. Total Environ., 599–600, 156, 10.1016/j.scitotenv.2017.04.241

Li, 2014, 454 pyrosequencing analysis of bacterial diversity revealed by a comparative study of soils from mining subsidence and reclamation areas, J. Microbiol. Biotechnol., 24, 313, 10.4014/jmb.1309.09001

Li, 2013, Fraction distribution and ecological risk assessment of soil heavy metals in the riparian zone of Huixi stream in Tongling city, Res. Environ. Sci., 26, 88

Liao, 2007, Effect of heavy metals on substrate utilization pattern, biomass, and activity of microbial communities in a reclaimed mining wasteland of red soil area, Ecotoxicol. Environ. Saf., 66, 217, 10.1016/j.ecoenv.2005.12.013

Liu, 2015, Ecological Effects of combined pollution associated with E-waste recycling on the composition and diversity of soil microbial communities, Environ. Sci. Technol., 49, 6438, 10.1021/es5049804

Lorenz, 2006, Response of microbial activity and microbial community composition in soils to long-term arsenic and cadmium exposure, Soil Biol. Biochem., 38, 1430, 10.1016/j.soilbio.2005.10.020

Mahmood, 2014, Human health risk assessment of heavy metals via consumption of contaminated vegetables collected from different irrigation sources in Lahore, Pakistan, Arab. J. Chem., 7, 91, 10.1016/j.arabjc.2013.07.002

Mazurek, 2017, Assessment of heavy metals contamination in surface layers of Roztocze National Park forest soils (SE Poland) by indices of pollution, Chemosphere, 168, 839, 10.1016/j.chemosphere.2016.10.126

Narendrula-Kotha, 2016, Bacterial and fungal community structure and diversity in a mining region under long-term metal exposure revealed by metagenomics sequencing, Ecol. Genet. Genom.

North, 2004, Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate, Appl. Environ. Microbiol., 70, 4911, 10.1128/AEM.70.8.4911-4920.2004

Pérez-Esteban, 2013, Bioavailability and extraction of heavy metals from contaminated soil by Atriplex halimus, Environ. Exp. Bot., 88, 53, 10.1016/j.envexpbot.2011.12.003

Rodríguez, 2009, Heavy metal distribution and chemical speciation in tailings and soils around a Pb-Zn mine in Spain, J. Environ. Manag., 90, 1106, 10.1016/j.jenvman.2008.04.007

Sagova-Mareckova, 2016, The structure of bacterial communities along two vertical profiles of a deep colluvial soil, Soil Biol. Biochem., 101, 65, 10.1016/j.soilbio.2016.06.026

Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol., 10.1128/AEM.01541-09

Schneider, 2017, Response of bacterial communities to Pb smelter pollution in contrasting soils, Sci. Total Environ., 605–606, 436, 10.1016/j.scitotenv.2017.06.159

Singh, 2014, Loss of microbial diversity in soils is coincident with reductions in some specialized functions, Environ. Microbiol., 16, 2408, 10.1111/1462-2920.12353

Sinkko, 2013, Bacteria contribute to sediment nutrient release and reflect progressed eutrophication-driven hypoxia in an organic-rich continental sea, PLoS One, 8, e67061, 10.1371/journal.pone.0067061

Stemmer, 2007, Linking dynamics of soil microbial phospholipid fatty acids to carbon mineralization in a 13C natural abundance experiment: impact of heavy metals and acid rain, Soil Biol. Biochem., 39, 3177, 10.1016/j.soilbio.2007.07.013

Tan, 2008, Culturable and molecular phylogenetic diversity of microorganisms in an open-dumped, extremely acidic Pb/Zn mine tailings, Extremophiles, 12, 657, 10.1007/s00792-008-0171-9

Turnbaugh, 2009, A core gut microbiome in obese and lean twins, Nature, 457, 480, 10.1038/nature07540

Vinhal-Freitas, 2017, Soil textural class plays a major role in evaluating the effects of land use on soil quality indicators, Ecol. Indic., 74, 182, 10.1016/j.ecolind.2016.11.020

Wang, 2012, Pyrosequencing analysis of bacterial diversity in 14 wastewater treatment systems in china, Appl. Environ. Microbiol., 78, 7042, 10.1128/AEM.01617-12

Waroszewski, 2009, Trace elements in soils of upper zone of spruce forest on Szrenica Mount and the Kowarski Grzbiet range in the Karkonosze Mountains, J. Elemntology, 14, 805

Will, 2010, Horizon-specific bacterial community composition of german grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes, Appl. Environ. Microbiol., 76, 6751, 10.1128/AEM.01063-10

Xu, 2013, Assessment of trace metal bioavailability in garden soils and health risks via consumption of vegetables in the vicinity of Tongling mining area, China, Ecotoxicol. Environ. Saf., 90, 103, 10.1016/j.ecoenv.2012.12.018

Xu, 2018, Biochar modulates heavy metal toxicity and improves microbial carbon use efficiency in soil, Sci. Total Environ., 621, 148, 10.1016/j.scitotenv.2017.11.214

Yang, 2014, Heavy metal contamination assessment and partition for industrial and mining Gathering areas, Int. J. Environ. Res. Public Health, 11, 7286, 10.3390/ijerph110707286

Yin, 2015, An integrated insight into the response of sedimentary microbial communities to heavy metal contamination, Sci. Rep., 5, 14266, 10.1038/srep14266

Zainun, 2017, Metagenomics profiling for assessing microbial diversity in both active and closed landfills, Sci. Total Environ., 269, 616

Zhang, 2007, Bacterial diversity at different depths in lead-zinc mine tailings as revealed by 16S rRNA gene libraries, J. Microbiol., 45, 479

Zhang, 2012, Assessment of bacterial communities and characterization of lead-resistant bacteria in the rhizosphere soils of metal-tolerant Chenopodium ambrosioides grown on lead-zinc mine tailings, Chemosphere, 87, 1171, 10.1016/j.chemosphere.2012.02.036

Zhang, 2016, Soil bacterial community dynamics reflect changes in plant community and soil properties during the secondary succession of abandoned farmland in the Loess Plateau, Soil Biol. Biochem., 97, 40, 10.1016/j.soilbio.2016.02.013

Zhao, 2016, Organic content influences sediment microbial fuel cell performance and community structure, Bioresour. Technol., 220, 549, 10.1016/j.biortech.2016.09.005