Structure at 2.3 Å resolution of the cytochrome bc1 complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment
Tóm tắt
Từ khóa
Tài liệu tham khảo
Hatefi, 1985, The mitochondrial electron transport and oxidative phosphorylation system, Ann. Rev. Biochem., 54, 1015, 10.1146/annurev.bi.54.070185.005055
Brandt, 1994, The proton motive Q-cycle in mitochondria and bacteria, CRC Crit. Rev. Biochem., 29, 165, 10.3109/10409239409086800
Schägger, 1986, Isolation of the eleven protein subunits of the bc1 complex from beef heart, Methods Enzymol., 126, 224, 10.1016/S0076-6879(86)26024-3
de Vries, 1987, The mitochondrial respiratory chain of yeast. Structure and biosynthesis and the role in cellular metabolism, Biochim. Biopys. Acta, 895, 205, 10.1016/S0304-4173(87)80003-4
Brandt, 1994, Isolation and characterization of QCR10, the nuclear gene encoding the 8.5-kDa subunit 10 of the Saccharomyces cerevisiae cytochrome bc1 complex, J. Biol. Chem., 269, 12 947, 10.1016/S0021-9258(18)99967-9
Xia, 1997, Crystal structure of the cytochrome bc1 complex from bovine heart mitochondria, Science, 277, 60, 10.1126/science.277.5322.60
Zhang, 1998, Electron transfer by domain movement in cytochrome bc1, Nature, 392, 677, 10.1038/33612
Iwata, 1998, Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex, Science, 281, 64, 10.1126/science.281.5373.64
Iwata, 1996, Structure of a water soluble fragment of the ‘Rieske’ iron–sulfur protein of the bovine heart mitochondrial cytochrome bc1 complex determined by MAD phasing at 1.5 Å resolution, Structure, 4, 567, 10.1016/S0969-2126(96)00062-7
Mitchell, 1976, Possible molecular mechanisms of the protonmotive function of cytochrome systems, J. Theor. Biol., 62, 327, 10.1016/0022-5193(76)90124-7
Crofts, 1985, The mechanism of ubiquinol:cytochrome c oxidoreductases of mitochondria and of Rhodopseudomonas sphaeroides, 347
Kim, 1998, Inhibitor binding changes domain mobility in the iron–sulfur protein of the mitochondrial bc1 complex from bovine heart, Proc. Natl Acad. Sci. USA, 95, 8026, 10.1073/pnas.95.14.8026
Brasseur, 1996, A compilation of mutations located in the cytochrome b subunit of the bacterial and mitochondrial bc1 complex, Biochim. Biophys. Acta, 1275, 61, 10.1016/0005-2728(96)00051-5
Ostermeier, 1995, Fv fragment-mediated crystallization of the membrane protein bacterial cytochrome c oxidase, Nat. Struct. Biol., 2, 842, 10.1038/nsb1095-842
Iwata, 1995, Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans, Nature, 376, 660, 10.1038/376660a0
Ostermeier, 1997, Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody Fv fragment, Proc. Natl Acad. Sci. USA., 94, 10 547, 10.1073/pnas.94.20.10547
Fu, 1990, Import of the iron–sulfur protein of the cytochrome bc1 complex into yeast mitochondria, J. Biol. Chem., 265, 16 541, 10.1016/S0021-9258(17)46257-0
Boumans, 1997, The role of subunit VIII in the structural stability of the bc1 complex from Saccharomyces cerevisiae studied using hybrid complexes, Eur. J. Biochem., 249, 762, 10.1111/j.1432-1033.1997.t01-3-00762.x
Stonehuerner, 1991, Identification of the binding site on cytochrome c1–c, J. Biol. Chem., 260, 5392, 10.1016/S0021-9258(18)89034-2
Kim, 1983, A mitochondrial protein essential for the formation of the cytochrome c1–c complex. Isolation, purification, and properties, J. Biol. Chem., 258, 13 543, 10.1016/S0021-9258(17)43948-2
Kim, 1987, Role of the hinge protein in the electron transfer between cardiac cytochrome c1 and c. Equilibrium constants and kinetic probes, J. Biol. Chem., 262, 8103, 10.1016/S0021-9258(18)47534-5
Schmitt, 1990, Subunit 6 regulates half of-the-sites reactivity of the dimeric cytochrome bc1 complex in Saccharomyces cerevisiae, J. Biol. Chem., 265, 17 005, 10.1016/S0021-9258(17)44860-5
Rawlings, 1991, Homologues of insulinase, a new superfamily of metallopeptidases, Biochem. J., 275, 389, 10.1042/bj2750389
Yang, 1988, Import of proteins into yeast mitochondria: the purified matrix processing protease contains two subunits which are encoded by nuclear MAS1 and MAS2 genes, EMBO J., 7, 3857, 10.1002/j.1460-2075.1988.tb03271.x
Braun, 1992, The general mitochondrial processing peptidase from potato is an integral part of cytochrome c reductase of the respiratory chain, EMBO J., 11, 3219, 10.1002/j.1460-2075.1992.tb05399.x
Schulte, 1989, A family of mitochondrial proteins involved in bioenergetics and biogenesis, Nature, 339, 147, 10.1038/339147a0
Deng, 1998, Activation of a matrix processing peptidase from the crystalline cytochrome bc1 complex of bovine heart mitochondria, J. Biol. Chem., 273, 20 752, 10.1074/jbc.273.33.20752
Tzagaloff, 1986, Assembly of the mitochondrial membrane system. Characterization of COR1, the structural gene for the 44-kilodalton core protein of yeast coenzyme QH2-cytochrome c reductase, J. Biol. Chem., 261, 17 163, 10.1016/S0021-9258(19)76013-X
Oudshoorn, 1997, Subunit II of the genes encoding the 40 kD subunit II or the 17 kD subunit VI on the steady-state kinetics of yeast ubiquinol-cytochrome-c oxidoreductase. Nucleotide sequence of the gene and features of the protein, Eur. J. Biochem., 163, 97, 10.1111/j.1432-1033.1987.tb10741.x
Braun, 1995, Are the ‘core’ proteins of the mitochondrial bc1 complex evolutionary relics of a processing protease?, Trends Biochem. Sci., 20, 171, 10.1016/S0968-0004(00)88999-9
di Rago, 1997, A point mutation in the mitochondrial cytochrome b gene obviates the requirement for the nuclear encoded core protein 2 subunit in the cytochrome bc1 complex in Saccharomyces cerevisiae, J. Biol. Chem., 272, 4699, 10.1074/jbc.272.8.4699
Lancaster, 1997, The coupling of light-induced electron transfer and proton uptake as derived from crystal structures of reaction centres from Rhodopseudomonas viridis modified at the binding site of the secondary quinone, QB, Structure, 5, 1339, 10.1016/S0969-2126(97)00285-2
Link, 1997, The role of the ‘Rieske’ iron sulfur protein in the hydroquinone oxidation (QP) site of the cytochrome bc1 complex, FEBS Lett., 412, 257, 10.1016/S0014-5793(97)00772-2
Crofts, 1999, Pathways for proton release during ubihydroquinone oxidation by the bc1 complex, Proc. Natl Acad. Sci. USA, 96, 10 021, 10.1073/pnas.96.18.10021
Degli Esposti, 1993, Mitochondrial cytochrome b: evolution and structure of the protein, Biochim. Biophys. Acta, 1143, 243, 10.1016/0005-2728(93)90197-N
Berry, 1991, Ubiquinol-cytochrome c oxidoreductase of higher plants, J. Biol. Chem., 266, 9064, 10.1016/S0021-9258(18)31553-9
Kleymann, 1995, Engineered Fv fragments as a tool for the one-step purification of integral multisubunit membrane protein complexes, Bio/Technol., 13, 155, 10.1038/nbt0295-155
Otwinowski, 1993, Oscillation data reduction program, 56
Minor, W. (1993). XDISPLAYF Program. Purdue University.
1994, The CCP4 suit: programs for protein crystallography, Acta Crystallogr. D, 50, 760, 10.1107/S0907444994003112
Brünger, 1992
Brünger, 1990, Extension of molecular replacement: a new search strategy based on Patterson correlation refinement, Acta Crystallog. A, 38, 46, 10.1107/S0108767389009633
Cowtan, 1994, ‘dm’: an automated procedure for phase improvement by density modification, Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, 34
Lamzin, 1993, Automated refinement of protein models, Acta Crystallogr. D, 49, 129, 10.1107/S0907444992008886
McRee, 1993
Jones, 1991, Improved methods for building protein models in electron-density maps and the location of error in these models, Acta Crystallogr. A, 47, 110, 10.1107/S0108767390010224
Brünger, 1998, Crystallographic and NMR system: a new software suite of macromolecular structure determination, Acta Crystallogr. D, 54, 905, 10.1107/S0907444998003254
Brünger, 1992, Free R value: a novel statistical quantity for assessing the accuracy of crystal structures, Nature, 335, 472, 10.1038/355472a0
Costanzo, 2000, The yeast proteome Database (YPD) and Caenorhabditis elegans proteome database (WormPD): comprehensive resources for the organization and comparison of model organism protein information, Nucleic Acids Res., 28, 73, 10.1093/nar/28.1.73
Humphrey, W.F., Dalke, A., & Schulten, K. (1996) VMD: Visual Molecular Dynamics. J. Mol. Graph. 14, 33-8, 27-8.