Structure Basis for the Regulation of Glyceraldehyde-3-Phosphate Dehydrogenase Activity via the Intrinsically Disordered Protein CP12
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Adams, 1997, Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement, Proc. Natl. Acad. Sci. USA, 94, 5018, 10.1073/pnas.94.10.5018
Adams, 2010, PHENIX: a comprehensive Python-based system for macromolecular structure solution, Acta Crystallogr. D Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925
Avilan, 1997, Information transfer in multienzyme complexes—2. The role of Arg64 of Chlamydomonas reinhardtii phosphoribulokinase in the information transfer between glyceraldehyde-3-phosphate dehydrogenase and phosphoribulokinase, Eur. J. Biochem., 250, 296, 10.1111/j.1432-1033.1997.0296a.x
Boggetto, 2007, Regulation of phosphoribulokinase and glyceraldehyde 3-phosphate dehydrogenase in a freshwater diatom, Asterionella formosa, J. Phycol., 43, 1227, 10.1111/j.1529-8817.2007.00409.x
Buchanan, 1980, Role of light in the regulation of chloroplast enzymes, Annu. Rev. Plant Physiol., 31, 341, 10.1146/annurev.pp.31.060180.002013
Buchanan, 2005, Redox regulation: a broadening horizon, Annu. Rev. Plant Biol., 56, 187, 10.1146/annurev.arplant.56.032604.144246
Delobel, 2005, Mass spectrometric analysis of the interactions between CP12, a chloroplast protein, and metal ions: a possible regulatory role within a PRK/GAPDH/CP12 complex, Rapid Commun. Mass Spectrom., 19, 3379, 10.1002/rcm.2192
Didierjean, 2003, Crystal structure of two ternary complexes of phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus with NAD and D-glyceraldehyde 3-phosphate, J. Biol. Chem., 278, 12968, 10.1074/jbc.M211040200
Dyson, 2002, Coupling of folding and binding for unstructured proteins, Curr. Opin. Struct. Biol., 12, 54, 10.1016/S0959-440X(02)00289-0
Dyson, 2005, Intrinsically unstructured proteins and their functions, Nat. Rev. Mol. Cell Biol., 6, 197, 10.1038/nrm1589
Emsley, 2004, Coot: model-building tools for molecular graphics, Acta Crystallogr. D Biol. Crystallogr., 60, 2126, 10.1107/S0907444904019158
Erales, 2009, CP12 from Chlamydomonas reinhardtii, a permanent specific “chaperone-like” protein of glyceraldehyde-3-phosphate dehydrogenase, J. Biol. Chem., 284, 12735, 10.1074/jbc.M808254200
Erales, 2008, Specificity and function of glyceraldehyde 3-phosphate dehydrogenase in a freshwater diatom, Asterionella formosa (Bacillariophyceae), J. Phycol., 44, 1455, 10.1111/j.1529-8817.2008.00600.x
Erales, 2009, Mapping of a copper-binding site on the small CP12 chloroplastic protein of Chlamydomonas reinhardtii using top-down mass spectrometry and site-directed mutagenesis, Biochem. J., 419, 75, 10.1042/BJ20082004
Erales, 2011, Molecular mechanism of NADPH-glyceraldehyde-3-phosphate dehydrogenase regulation through the C-terminus of CP12 in Chlamydomonas reinhardtii, Biochemistry, 50, 2881, 10.1021/bi1020259
Fermani, 2007, Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase, Proc. Natl. Acad. Sci. USA, 104, 11109, 10.1073/pnas.0611636104
Gardebien, 2006, Construction of a 3D model of CP12, a protein linker, J. Mol. Graph. Model., 25, 186, 10.1016/j.jmgm.2005.12.003
Gouet, 1999, ESPript: analysis of multiple sequence alignments in PostScript, Bioinformatics, 15, 305, 10.1093/bioinformatics/15.4.305
Graciet, 2003, Characterization of native and recombinant A4 glyceraldehyde 3-phosphate dehydrogenase. Kinetic evidence for conformation changes upon association with the small protein CP12, Eur. J. Biochem., 270, 129, 10.1046/j.1432-1033.2003.03372.x
Graciet, 2003, The small protein CP12: a protein linker for supramolecular complex assembly, Biochemistry, 42, 8163, 10.1021/bi034474x
Heineke, 1991, Redox transfer across the inner chloroplast envelope membrane, Plant Physiol., 95, 1131, 10.1104/pp.95.4.1131
Howard, 2008, Thioredoxin-mediated reversible dissociation of a stromal multiprotein complex in response to changes in light availability, Proc. Natl. Acad. Sci. USA, 105, 4056, 10.1073/pnas.0710518105
Kitatani, 2006, Structure of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Synechococcus PCC7942 complexed with NADP, Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 62, 315, 10.1107/S1744309106007378
Kraulis, 1991, MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr., 24, 946, 10.1107/S0021889891004399
Külheim, 2002, Rapid regulation of light harvesting and plant fitness in the field, Science, 297, 91, 10.1126/science.1072359
Laskowski, 1993, PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr., 26, 283, 10.1107/S0021889892009944
Lebreton, 2006, Mapping of the interaction site of CP12 with glyceraldehyde-3-phosphate dehydrogenase from Chlamydomonas reinhardtii. Functional consequences for glyceraldehyde-3-phosphate dehydrogenase, FEBS J., 273, 3358, 10.1111/j.1742-4658.2006.05342.x
Marri, 2005, Reconstitution and properties of the recombinant glyceraldehyde-3-phosphate dehydrogenase/CP12/phosphoribulokinase supramolecular complex of Arabidopsis, Plant Physiol., 139, 1433, 10.1104/pp.105.068445
Marri, 2008, Spontaneous assembly of photosynthetic supramolecular complexes as mediated by the intrinsically unstructured protein CP12, J. Biol. Chem., 283, 1831, 10.1074/jbc.M705650200
Merritt, 1994, Raster3D Version 2.0. A program for photorealistic molecular graphics, Acta Crystallogr. D Biol. Crystallogr., 50, 869, 10.1107/S0907444994006396
Namba, 2001, Roles of partly unfolded conformations in macromolecular self-assembly, Genes Cells, 6, 1, 10.1046/j.1365-2443.2001.00384.x
Nicholls, 1991, Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons, Proteins, 11, 281, 10.1002/prot.340110407
Otwinowski, Z. (1993). Oscillation data reduction program. L. Sawyer, N. Isaacs, and S. Bailey, eds. Proceedings of the CCP4 Study Weekend: Data Collection and Processing. Warrington: Daresbury Laboratory. pp 56–62.
Pohlmeyer, 1996, CP12: a small nuclear-encoded chloroplast protein provides novel insights into higher-plant GAPDH evolution, Plant Mol. Biol., 32, 969, 10.1007/BF00020493
Scheibe, 2002, Co-existence of two regulatory NADP-glyceraldehyde 3-P dehydrogenase complexes in higher plant chloroplasts, Eur. J. Biochem., 269, 5617, 10.1046/j.1432-1033.2002.03269.x
Tamoi, 1996, Enzymic and molecular characterization of NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Synechococcus PCC 7942: resistance of the enzyme to hydrogen peroxide, Biochem. J., 316, 685, 10.1042/bj3160685
Tamoi, 2005, The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions, Plant J., 42, 504, 10.1111/j.1365-313X.2005.02391.x
Tompa, 2002, Intrinsically unstructured proteins, Trends Biochem. Sci., 27, 527, 10.1016/S0968-0004(02)02169-2
Trost, 2006, Thioredoxin-dependent regulation of photosynthetic glyceraldehyde-3-phosphate dehydrogenase: autonomous vs. CP12-dependent mechanisms, Photosynth. Res., 89, 263, 10.1007/s11120-006-9099-z
Uversky, 2005, Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling, J. Mol. Recognit., 18, 343, 10.1002/jmr.747
Vagin, 1997, MOLREP: an automated program for molecular replacement, J. Appl. Crystallogr., 30, 1022, 10.1107/S0021889897006766
Wallace, 1995, LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions, Protein Eng., 8, 127, 10.1093/protein/8.2.127
Wedel, 1998, Evolutionary conserved light regulation of Calvin cycle activity by NADPH-mediated reversible phosphoribulokinase/CP12/glyceraldehyde-3-phosphate dehydrogenase complex dissociation, Proc. Natl. Acad. Sci. USA, 95, 9699, 10.1073/pnas.95.16.9699
Wedel, 1997, CP12 provides a new mode of light regulation of Calvin cycle activity in higher plants, Proc. Natl. Acad. Sci. USA, 94, 10479, 10.1073/pnas.94.19.10479
Wright, 1999, Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm, J. Mol. Biol., 293, 321, 10.1006/jmbi.1999.3110
