Structural insights into kinetoplastid coronin oligomerization domain and F-actin interaction

Adams, 2010, PHENIX: a comprehensive Python-based system for macromolecular structure solution, Acta Crystallogr. Sect. D Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925 Afonine, 2012, Towards automated crystallographic structure refinement with phenix. refine, Acta Crystallogr. Sect. D Biol. Crystallogr., 68, 352, 10.1107/S0907444912001308 Appleton, 2006, The crystal structure of murine coronin-1: a regulator of actin cytoskeletal dynamics in lymphocytes, Structure, 14, 87, 10.1016/j.str.2005.09.013 Ayscough, 1998, In vivo functions of actin-binding proteins, Curr. Opin. Cell Biol., 10, 102, 10.1016/S0955-0674(98)80092-6 Bane, 2016, The actin filament-binding protein coronin regulates motility in Plasmodium sporozoites, PLoS Pathog., 12, 10.1371/journal.ppat.1005710 Bharathi, 2004, Genetic characterization of the Drosophila homologue of coronin, J. Cell Sci., 117, 1911, 10.1242/jcs.01034 de Hostos, 1999, The coronin family of actin-associated proteins, Trends Cell Biol., 345, 10.1016/S0962-8924(99)01620-7 De Hostos, 1993, Dictyostelium mutants lacking the cytoskeletal protein coronin are defective in cytokinesis and cell motility, J. Cell Biol., 120, 163, 10.1083/jcb.120.1.163 Deng, 2007, Self-assembly of coiled-coil tetramers in the 1.40 Å structure of a leucine-zipper mutant, Protein Sci., 16, 323, 10.1110/ps.062590807 Dunin-Horkawicz, 2010, Measuring the conformational space of square four-helical bundles with the program samCC, J. Struct. Biol., 170, 226, 10.1016/j.jsb.2010.01.023 Eckert, 2011, A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function, BMC Evol. Biol., 11, 1, 10.1186/1471-2148-11-268 Emsley, 2010, Features and development of coot, Acta Crystallogr. Sect. D Biol. Crystallogr., 66, 486, 10.1107/S0907444910007493 Garcia-Salcedo, 2004, A differential role for actin during the lifecycle of, T. brucei. EMBO J., 23, 780, 10.1038/sj.emboj.7600094 Goode, 1999, Coronin promotes the rapid assembly and cross-linking of actin filaments and may link the actin and microtubule cytoskeletons in yeast, J. Cell Biol., 144, 83, 10.1083/jcb.144.1.83 Hacker, 1997, Fluid-phase uptake by macropinocytosis in Dictyostelium, J. Cell Sci., 110, 105, 10.1242/jcs.110.2.105 Harbury, 1998, High-resolution protein design with backbone freedom, Science, 282, 1462, 10.1126/science.282.5393.1462 Harbury, 1993, A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants, Science, 262, 1401, 10.1126/science.8248779 Humphries, 2002, Direct regulation of Arp2/3 complex activity and function by the actin binding protein coronin, J. Cell Biol., 159, 993, 10.1083/jcb.200206113 Kammerer, 2005, A conserved trimerization motif controls the topology of short coiled coils, Proc. Natl. Acad. Sci. Unit. States Am., 13891, 10.1073/pnas.0502390102 Karade, 2020, Molecular and structural analysis of a mechanical transition of helices in the L. donovani coronin coiled-coil domain, Int. J. Biol. Macromol., 143, 785, 10.1016/j.ijbiomac.2019.09.138 Kohn, 1998, Orientation, positional, additivity, and oligomerization-state effects of interhelical ion pairs in alpha-helical coiled-coils, J. Mol. Biol., 283, 993, 10.1006/jmbi.1998.2125 Krissinel, 2007, Inference of macromolecular assemblies from crystalline state, J. Mol. Biol., 372, 774, 10.1016/j.jmb.2007.05.022 Krylov, 1994, A thermodynamic scale for leucine zipper stability and dimerization specificity: e and g interhelical interactions, EMBO J., 13, 2849, 10.1002/j.1460-2075.1994.tb06579.x Kumar, 2018, New tetrameric forms of the rotavirus NSP4 with antiparallel helices, Arch. Virol., 163, 1531, 10.1007/s00705-018-3753-6 Liu, 2006, A seven-helix coiled coil, Proc. Natl. Acad. Sci. Unit. States Am., 15457, 10.1073/pnas.0604871103 Maniak, 1995, Coronin involved in phagocytosis: dynamics of particle-induced relocalization visualized by a green fluorescent protein Tag, Cell, 83, 915, 10.1016/0092-8674(95)90207-4 McArdle, 2008, Coronin structure and implications, 48 McClain, 2001, Evaluation of the energetic contribution of interhelical Coulombic interactions for coiled coil helix orientation specificity, J. Mol. Biol., 313, 371, 10.1006/jmbi.2001.5044 Minor, 2006, HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes, Acta. Crystallogr D. Biol. Crystallogr., 62, 859, 10.1107/S0907444906019949 Monera, 1994, Electrostatic interactions control the parallel and antiparallel orientation of alpha-helical chains in two-stranded alpha-helical coiled-coils, Biochemistry, 33, 3862, 10.1021/bi00179a010 Morgan, 2008, Molecular phylogeny and evolution of the coronin gene family, 41 Nagasaki, 2001, Genetic approaches to dissect the mechanisms of two distinct pathways of cell cycle-coupled cytokinesis in Dictyostelium, Cell Struct. Funct., 26, 585, 10.1247/csf.26.585 Nayak, 2016, Structure of Leishmania donovani coronin coiled coil domain reveals an antiparallel 4 helix bundle with inherent asymmetry, J. Struct. Biol., 195, 129, 10.1016/j.jsb.2016.02.020 Nayak, 2005, A novel homologue of coronin colocalizes with actin in filament-like structures in Leishmania, Mol. Biochem. Parasitol., 143, 152, 10.1016/j.molbiopara.2005.06.001 O'Shea, 1993, Peptide ‘Velcro’: design of a heterodimeric coiled coil, Curr. Biol., 3, 658, 10.1016/0960-9822(93)90063-T Otwinowski, 1997, Processing of X-ray diffraction data collected in oscillation mode, 276, 307 Petoukhov, 2012, New developments in the ATSAS program package for small-angle scattering data analysis, J. Appl. Crystallogr., 45, 342, 10.1107/S0021889812007662 Pratap, 2013, Geometric principles in packing of helices, Philos. Trans A. Maths. Phys. Eng. Sci., 371(1993) Rackham, 2010, The evolution and structure prediction of coiled coils across all genomes, J. Mol. Biol., 480, 10.1016/j.jmb.2010.08.032 Reisler, 1993, Actin molecular structure and function, Curr. Opin. Cell Biol., 5, 41, 10.1016/S0955-0674(05)80006-7 Shina, 2011, Redundant and unique roles of coronin proteins in Dictyostelium, Cell. Mol. Life Sci., 68, 303, 10.1007/s00018-010-0455-y Robert, 2014, Deciphering key features in protein structures with the new ENDscript server, Nucl. Acids. Res., 42(W1), W320, 10.1093/nar/gku316 Sahasrabuddhe, 2004, A novel form of actin in Leishmania : molecular characterization, subcellular localization and association with subpellicular microtubules, Mol. Biochem. Parasitol., 134, 105, 10.1016/j.molbiopara.2003.11.008 Spoerl, 2002, Oligomerization, F-actin interaction, and membrane association of the ubiquitous mammalian coronin 3 are mediated by its carboxyl terminus, J. Biol. Chem., 277, 48858, 10.1074/jbc.M205136200 Srivastava, 2015, Oligomerization of coronin: implication on actin filament length in Leishmania, Cytoskeleton, 72, 621, 10.1002/cm.21269 Stetefeld, 2000, Crystal structure of a naturally occurring parallel right-handed coiled coil tetramer, Nat. Struct. Biol., 7, 772, 10.1038/79006 Svergun, 2001, Determination of domain structure of proteins from X-ray solution scattering, Biophys. J., 80, 2946, 10.1016/S0006-3495(01)76260-1 Tchang, 2013, Diverging role for coronin 1 in antiviral CD4+ and CD8+ T cell responses, Mol. Immunol., 56, 683, 10.1016/j.molimm.2013.05.003 Volkov, 2003, Uniqueness of ab initio shape determination in small-angle scattering, J. Appl. Crystallogr., 36, 860, 10.1107/S0021889803000268 Wolf, 1997, MultiCoil: a program for predicting two-and three-stranded coiled coils, Protein Sci., 1179, 10.1002/pro.5560060606 Xavier, 2008, Evolutionary and functional diversity of coronin proteins, 98 Xavier, 2012, Phosphorylation of CRN2 by CK2 regulates F-actin and Arp2/3 interaction and inhibits cell migration, Sci. Rep., 2, 241, 10.1038/srep00241 Yan, 2005, Coronin-1 function is required for phagosome formation, Mol. Biol. Cell, 16, 3077, 10.1091/mbc.e04-11-0989 Zeng, 1997, Oligomerization properties of GCN4 leucine zipper e and g position mutants, Protein Sci., 6, 2218, 10.1002/pro.5560061016 Zwart, 2005, Characterization of X-ray Datasets, CCP4 Newsletts., 42