Structural and functional profiles of the gut microbial community in polycystic ovary syndrome with insulin resistance (IR-PCOS): a pilot study

Research in Microbiology - Tập 170 - Trang 43-52 - 2019
Bo Zeng1, Zhiwen Lai1,2, Lijin Sun3, Zhongbao Zhang1, Jianhua Yang1,4, Zaixin Li1, Jie Lin2, Zhi Zhang1
1Department of Pharmaceutical Engineering, Sichuan University of Science & Engineering, 180 Xueyuan Street, Zigong, 643000, Sichuan, China
2Department of Reproductive Medicine Center, Zigong Maternal and Child Health Care Hospital, 180 Longjin Street, Zigong, 643000, Sichuan, China
3College of Biological Engineering, Sichuan University of Science & Engineering, 180 Xueyuan Street, Zigong, 643000, Sichuan, China
4Department of Pediatrics, Texas Children's Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA

Tài liệu tham khảo

Daan, 2016, Biomarker profiles in women with PCOS and PCOS offspring: a pilot study, PloS One, 11, 10.1371/journal.pone.0165033 Li, 2013, Prevalence of polycystic ovary syndrome in women in China: a large community-based study, Hum Reprod, 28, 2562, 10.1093/humrep/det262 Yildirim, 2003, Relation of intra-abdominal fat distribution to metabolic disorders inonobese patients with polycystic ovary syndrome, Fertil Steril, 79, 1358, 10.1016/S0015-0282(03)00265-6 Azziz, 2004, The prevalence and features of the polycystic ovary syndrome in an unselected population, J Clin Endocrinol Metab, 89, 2745, 10.1210/jc.2003-032046 Lindholm, 2008, Prevalence of symptoms associated with polycystic ovary syndrome, Int J Gynaecol Obstet, 102, 39, 10.1016/j.ijgo.2008.01.023 Diamanti-Kandarakis, 2012, Insulin resistance and the polycystic ovary syndrome revisited: an update on mechanisms and implications, Endocr Rev, 33, 981, 10.1210/er.2011-1034 Lakkakula, 2013, Genetic variants associated with insulin signaling and glucose homeostasis in the pathogenesis of insulin resistance in polycystic ovary syndrome: a systematic review, J Assist Reprod Genet, 30, 883, 10.1007/s10815-013-0030-1 Orio, 2006, Polycystic ovary syndrome: an example of obesity-related cardiovascular complication affecting young women, Monaldi Arch Chest Dis, 66, 48 Victor, 2016, Insulin resistance in PCOS patients enhances oxidative stress and leukocyte adhesion: role of myeloperoxidase, PloS One, 11, 10.1371/journal.pone.0151960 Chung, 2012, Gut immune maturation depends on colonization with a host-specific microbiota, Cell, 149, 1578, 10.1016/j.cell.2012.04.037 Krajmalnik-Brown, 2012, Effects of gut microbes on nutrient absorption and energy regulation, Nutr Clin Pract, 27, 201, 10.1177/0884533611436116 Everard, 2013, Diabetes, obesity and gut microbiota, Best Pract Res Clin Gastroenterol, 27, 73, 10.1016/j.bpg.2013.03.007 D'Aversa, 2013, Gut microbiota and metabolic syndrome, Intern Emerg Med, 8, S11, 10.1007/s11739-013-0916-z Tremellen, 2012, Dysbiosis of gut microbiota (DOGMA)--a novel theory for the development of polycystic ovarian syndrome, Med Hypotheses, 79, 104, 10.1016/j.mehy.2012.04.016 Caricilli, 2013, The role of gut microbiota on insulin resistance, Nutrients, 5, 829, 10.3390/nu5030829 Lindheim, 2017, Alterations in gut microbiome composition and barrier function are associated with reproductive and metabolic defects in women with polycystic ovary syndrome (PCOS): a pilot study, PloS One, 12, 10.1371/journal.pone.0168390 Liu, 2017, Dysbiosis of gut microbiota associated with clinical parameters in polycystic ovary syndrome, Front Microbiol, 8, 324 Torres, 2018, Gut microbial diversity in women with polycystic ovary syndrome correlates with hyperandrogenism, J Clin Endocrinol Metab, 103, 1502, 10.1210/jc.2017-02153 Group REA, 2004, Revised 2003 consensus on diagnostic criteria and long-term health risks related to polycystic ovary syndrome, Fertil Steril, 81, 19, 10.1016/j.fertnstert.2003.10.004 Taghizadeh, 2015, BMI and lifetime changes in BMI and cancer mortality risk, PloS One, 10, 10.1371/journal.pone.0125261 Wu, 2014, Abdominal obesity and its association with health-related quality of life in adults: a population-based study in five Chinese cities, Health Qual Life Outcome., 12, 10.1186/1477-7525-12-100 Kim, 2014, Total adiponectin, but not inflammatory markers C-reactive protein, tumor necrosis factor-α, interluekin-6 and monocyte chemoattractant protein-1, correlates with increasing glucose intolerance in pregnant Chinese–Americans, J Diabetes, 6, 360 Singh, 2013, A study of insulin resistance by HOMA-IR and its cut-off value to identify metabolic syndrome in urban indian adolescents, J Clin Res Pediatr Endocrinol, 5, 245, 10.4274/Jcrpe.1127 Wang, 2017, Diversity analysis of gut microbiota in osteoporosis and osteopenia patients, Peer J, 5, e3450, 10.7717/peerj.3450 Magoč, 2011, FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, 27, 2957, 10.1093/bioinformatics/btr507 Cole, 2013, Ribosomal database project: data and tools for high throughput rRNA analysis, Nucleic Acids Res, 42, D633, 10.1093/nar/gkt1244 Price, 2009, FastTree: computing large minimum evolution trees with profiles instead of a distance matrix, Mol Biol, 26, 1641, 10.1093/molbev/msp077 Quast, 2013, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res, 41, D590, 10.1093/nar/gks1219 Schloss, 2009, Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl Environ Microbiol, 75, 7537, 10.1128/AEM.01541-09 Lozupone, 2005, UniFrac: a new phylogenetic method for comparing microbial communities, Appl Environ Microbiol, 71, 8228, 10.1128/AEM.71.12.8228-8235.2005 Li, 2017, Multi-omics analysis reveals a correlation between the host phylogeny, gut microbiota and metabolite profiles in cyprinid fishes, Front Microbiol, 8, 454 Benjamini, 1995, Controlling the false discovery rate-a practical and powerful approach to multiple testing, J Roy Stat Soc, 57, 289 Langille, 2013, Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences, Nat Biotechnol, 31, 814, 10.1038/nbt.2676 March, 2010, The prevalence of polycystic ovary syndrome in a community sample assessed under contrasting diagnostic criteria, Hum Reprod, 25, 544, 10.1093/humrep/dep399 Xita, 2006, Review: fetal programming of polycystic ovary syndrome by androgen excess: evidence from experimental, clinical, and genetic association studies, J Clin Endocrinol Metab, 91, 1660, 10.1210/jc.2005-2757 Dumesic, 2005, Early origins of polycystic ovary syndrome (PCOS), Reprod Fertil Dev, 17, 349, 10.1071/RD04092 Guo, 2016, Association between polycystic ovary syndrome and gut microbiota, PloS One, 11 Vink, 2006, Heritability of polycystic ovary syndrome in a Dutch twin-family study, J Clin Endocrinol Metab, 91, 2100, 10.1210/jc.2005-1494 Domecq, 2013, Lifestyle modification programs in polycystic ovary syndrome: systematic review and meta-analysis, J Clin Endocrinol Metab, 98, 4655, 10.1210/jc.2013-2385 Mejia-Leon, 2014, Fecal microbiota imbalance in Mexican children with type 1 diabetes, Sci Rep, 4, 3814, 10.1038/srep03814 Murri, 2013, Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study, BMC Med, 11, 10.1186/1741-7015-11-46 Nakayama, 2017, Impact of westernized diet on gut microbiota in children on Leyte island, Front Microbiol, 8, 197, 10.3389/fmicb.2017.00197 Li, 2016, Probiotics modulated gut microbiota suppresses hepatocellular carcinoma growth in mice, Proc Natl Acad Sci U S A, 113, E1306 de la Cuesta-Zuluaga, 2017, Metformin is associated with higher relative abundance of mucin-degrading Akkermansia muciniphila and several short-chain fatty acid-producing microbiota in the gut, Diabetes Care, 40, 54, 10.2337/dc16-1324 Zhang, 2009, Human gut microbiota in obesity and after gastric bypass, Proc Natl Acad Sci U S A, 106, 2365, 10.1073/pnas.0812600106 Lukens, 2014, Dietary modulation of the microbiome affects autoinflammatory disease, Nature, 516, 246, 10.1038/nature13788 Gupta, 2015, Divergences in gene repertoire among the reference Prevotella genomes derived from distinct body sites of human, BMC Genomics, 16, 153, 10.1186/s12864-015-1350-6 Andoh, 2009, Faecal microbiota profile of Crohn's disease determined by terminal restriction fragment length polymorphism analysis, Aliment Pharmacol Ther, 29, 75, 10.1111/j.1365-2036.2008.03860.x Swidsinski, 2005, Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease, J Clin Microbiol, 43, 3380, 10.1128/JCM.43.7.3380-3389.2005 Vinke, 2017, The role of supplemental complex dietary carbohydrates and gut microbiota in promoting cardiometabolic and immunological health in obesity: lessons from healthy non-obese individuals, Front Nutr, 4, 34, 10.3389/fnut.2017.00034 Amar, 2011, Intestinal mucosal adherence and translocation of commensal bacteria at the early onset of type 2 diabetes: molecular mechanisms and probiotic treatment, EMBO Mol Med, 3, 559, 10.1002/emmm.201100159 Cani, 2007, Metabolic endotoxemia initiates obesity and insulin resistance, Diabetes, 56, 1761, 10.2337/db06-1491 Denou, 2015, Defective NOD2 peptidoglycan sensing promotes diet-induced inflammation, dysbiosis, and insulin resistance, EMBO Mol Med, 7, 259, 10.15252/emmm.201404169 Schertzer, 2011, NOD1 activators link innate immunity to insulin resistance, Diabetes, 60, 2206, 10.2337/db11-0004 Grasset, 2017, A specific gut microbiota dysbiosis of type 2 diabetic mice induces GLP-1 resistance through an enteric NO-dependent and gut-brain axis mechanism, Cell Metabol, 26, 278, 10.1016/j.cmet.2017.06.003 Claus, 2017, Will gut microbiota help design the next generation of GLP-1-based therapies for type 2 diabetes?, Cell Metabol, 26, 6, 10.1016/j.cmet.2017.06.009 Mackie, 2002, Mutualistic fermentative digestion in the gastrointestinal tract: diversity and evolution, Integr Comp Biol, 42, 319, 10.1093/icb/42.2.319 Wu, 2011, Linking long-term dietary patterns with gut microbial enterotypes, Science, 334, 105, 10.1126/science.1208344 Amato, 2015, The gut microbiota appears to compensate for seasonal diet variation in the wild black howler monkey (Alouatta pigra), Microb Ecol, 69, 434, 10.1007/s00248-014-0554-7 Kovatcheva-Datchary, 2015, Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella, Cell Metabol, 22, 971, 10.1016/j.cmet.2015.10.001 Franco-de-Moraes, 2017, Worse inflammatory profile in omnivores than in vegetarians associates with the gut microbiota composition, Diabetol Metab Syndrome, 9, 62, 10.1186/s13098-017-0261-x