Streptomyces bullii sp. nov., isolated from a hyper-arid Atacama Desert soil

Antony-Babu S, Goodfellow M (2008) Biosystematics of alkaliphilic streptomycetes isolated from seven locations across a beach and dune sand system. Antonie Van Leeuwenhoek 94:581–591

Athalye M, Lacey J, Goodfellow M (1981) Selective isolation and enumeration of actinomycetes using rifampicin. J Appl Microbiol 51:289–299

Collins MD, Goodfellow M, Minnikin DE, Alderson G (1985) Menaquinone composition of mycolic acid-containing actinomycetes and some sporoactinomycetes. J Appl Bacteriol 58:77–86

Euzéby J P (2012) List of bacterial names with standing in nomenclature: a folder available on the Internet. (Last full update: 06 July 2012) http://www.bacterio.cict.fr/

Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zoolog 20:406–416

Goodfellow M, Fiedler HP (2010) A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie Van Leeuwenhoek 98:119–142

Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319–322

Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141–145

Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, London, pp 21–132

Kämpfer P (2012) Genus I. Streptomyces Waksman and Henrici 1943, 339AL emend. Witt and Stackebrandt 1990, 370, emend. Wellington, Stackebrandt, Sanders, Wolstrup and Jorgensen 1992, 159. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey’s manual of systematic bacteriology, Part B, vol 5, 2nd edn. Springer, New York, pp 1455–1767

Kawato M, Shinobu R (1959) On Streptomyces herbaricolor sp. nov., supplement: a simple technique for microscopical observation. Mem Osaka Univ Lib Arts Educ B Nat Sci 8:114–119

Kim S-B, Goodfellow M (2002) Streptomyces thermospinisporus sp. nov., a moderately thermophilic carboxydotrophic streptomycete isolated from soil. Int J Syst Evol Microbiol 52:1225–1228

Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park S, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721

Labeda DP, Goodfellow M, Brown R, Ward AC, Lanoot C, Vanncanneyt M, Swings J, Kim S-B, Liu Z, Chun J, Tamura T, Oguchi A, Kikuchi T, Kikuchi H, Nishii T, Tsuji K, Yamaguchi Y, Tase A, Takahashi M, Sakane T, Suzuki KI, Hatano K (2012) Phylogenetic study of the species within the family Streptomycetaceae. Antonie Van Leeuwenhoek 101(1):73–104

Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167

Nachtigall J, Kulik Helaly S, Bull AT, Goodfellow M, Arenjo JA, Maier A, Wiese J, Inhoff JF, Süssmuth R-D, Fiedler H-P (2011) Atacamycins A-C, 22 membered antitumor macrolide derivatives produced by Streptomyces sp. C38. J Antibiot 64:775–780

O’Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E (1993) Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie Van Leeuwenhoek 64:325–340

Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT (2009) Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. Antonie Van Leeuwenhoek 95:121–133

Rateb ME, Houssen WE, Arnold M, Abdelrahman M-H, Deng H, Harrison WTA, Okoro CK, Asenjo JA, Andrews BA, Ferguson G, Bull AT, Goodfellow M, Ebel R, Jaspars M (2011a) Chaxamycins A-D, bioactive ansamycins from a hyper-arid desert Streptomyces sp. J Nat Prod 74:1965–1971

Rateb ME, Houssen WE, Harrison WT, Deng H, Okoro CK, Asenjo JA, Andrews BA, Bull AT, Goodfellow M, Ebel R, Jaspars M (2011b) Diverse metabolic profiles of a Streptomyces strain isolated from a hyper-arid environment. J Nat Prod 74:1491–1499

Rong X, Huang Y (2010) Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA–DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. Int J Syst Evol Microbiol 60:696–703

Rzhetsky A, Nei M (1992) A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9:945–967

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Andrews BA, Asenjo AJ, Weon HY, Goodfellow M (2012a) Streptomyces deserti sp. nov., isolated from hyper-arid desert soil. Antonie Van Leeuwenhoek 101:575–581

Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Goodfellow M (2012b) Streptomyces atacamensis sp. nov., isolated from an extreme hyper-arid soil of the Atacama Desert. Int J Syst Evol Microbiol (in press)

Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc., Newark

Schulze D, Beese P, Ohlenderf B, Erhard A, Zinecker H, Dorador C, Imhoff J (2011) Abenquines A-D: aminoquinone derivatives produced by Streptomyces sp. strain DB634. J Antibiot 64:763–768

Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Evol Microbiol 16:313–340

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray R-G-E et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464

Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743–1813