Strategies for organelle targeting of fluorescent probes

Organic and Biomolecular Chemistry - Tập 19 Số 43 - Trang 9339-9357
Jiarun Lin1,2, Kylie Yang1, Elizabeth J. New3,1,2
1School of Chemistry, The University of Sydney, NSW, 2006 Australia
2The University of Sydney Nano Institute (Sydney Nano), The University of Sydney, NSW 2006, Australia
3Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, The University of Sydney, NSW 2006, Australia

Tóm tắt

Here we provide a comprehensive review of methods for targeting fluorescent cargo to sub-cellular organelles.

Từ khóa


Tài liệu tham khảo

Pap, 2001, Exp. Cell Res., 265, 288, 10.1006/excr.2001.5190

Wen, 2014, Anal. Chem., 86, 9970, 10.1021/ac502909c

Saito, 2012, Biosci., Biotechnol., Biochem., 76, 1777, 10.1271/bbb.120140

Lukinavicius, 2014, Nat. Methods, 11, 731, 10.1038/nmeth.2972

Tang, 2017, Sci. Rep., 7, 12944, 10.1038/s41598-017-13325-z

Collot, 2018, J. Am. Chem. Soc., 140, 5401, 10.1021/jacs.7b12817

Zwicker, 2019, Angew. Chem., Int. Ed., 58, 3087, 10.1002/anie.201812489

Pjura, 1987, J. Mol. Biol., 197, 257, 10.1016/0022-2836(87)90123-9

Zhang, 2019, Chem. Commun., 55, 1951, 10.1039/C8CC08575G

Kaur, 2015, Org. Biomol. Chem., 13, 6686, 10.1039/C5OB00928F

Faulstich, 1983, Exp. Cell Res., 144, 73, 10.1016/0014-4827(83)90443-3

Hu, 2017, Bioconjugate Chem., 28, 590, 10.1021/acs.bioconjchem.6b00682

Birk, 2013, J. Am. Soc. Nephrol., 24, 1250, 10.1681/ASN.2012121216

Yapici, 2015, Sci. Rep., 5, 8576, 10.1038/srep08576

Piazzolla, 2021, Angew. Chem., 60, 12258, 10.1002/anie.202016105

Sampedro, 2014, Bioconjugate Chem., 25, 1537, 10.1021/bc500258b

Pagano, 1991, J. Cell Biol., 113, 1267, 10.1083/jcb.113.6.1267

Gupta, 2020, Nat. Chem. Biol., 16, 408, 10.1038/s41589-020-0479-z

Iwashita, 2018, FEBS Lett., 592, 559, 10.1002/1873-3468.12979

Fujishima, 2012, J. Am. Chem. Soc., 134, 3961, 10.1021/ja2108855

Horton, 2008, Chem. Biol., 15, 375, 10.1016/j.chembiol.2008.03.015

Kulkarni, 2021, J. Med. Chem., 64, 662, 10.1021/acs.jmedchem.0c01671

Zhu, 2012, Chem. Commun., 48, 11766, 10.1039/c2cc36785h

Han, 2017, Nat. Commun., 8, 1307, 10.1038/s41467-017-01503-6

Wang, 2021, Angew. Chem., Int. Ed., 60, 15095, 10.1002/anie.202104163

Ikeda, 2010, Free Radical Biol. Med., 49, 1792, 10.1016/j.freeradbiomed.2010.09.009

Li, 2017, Chem. Sci., 8, 6829, 10.1039/C7SC01316G

Dyall, 2004, Science, 304, 253, 10.1126/science.1094884

Jiang, 2017, Chem. Commun., 53, 3645, 10.1039/C7CC00752C

Miao, 2016, ChemPlusChem, 81, 1209, 10.1002/cplu.201600249

Gray, 1989, Trends Genet., 5, 294, 10.1016/0168-9525(89)90111-X

Ning, 2019, Chem. Commun., 55, 1782, 10.1039/C8CC09517E

Zhang, 2013, J. Am. Chem. Soc., 135, 11663, 10.1021/ja4056905

S. J.Ferguson , in Comprehensive Biophysics , 2012 , pp. 1–8 , 10.1016/b978-0-12-374920-8.00801-8

Weisz, 2003, Traffic, 4, 57, 10.1034/j.1600-0854.2003.40201.x

Specht, 2017, Annu. Rev. Physiol., 79, 93, 10.1146/annurev-physiol-022516-034055

New, 2016, ACS Sens., 1, 328, 10.1021/acssensors.6b00148

Tsien, 1998, Annu. Rev. Biochem., 67, 509, 10.1146/annurev.biochem.67.1.509

F.De Giorgi , Z.Ahmed , C.Bastianutto , M.Brini , L. S.Jouaville , R.Marsault , M.Murgia , P.Pinton , T.Pozzan and R.Rizzuto , in Green Fluorescent Proteins , 1998 , pp. 75–85 , 10.1016/s0091-679x(08)61949-4

Zielonka, 2017, Chem. Rev., 117, 10043, 10.1021/acs.chemrev.7b00042

Liss, 2015, Sci. Rep., 5, 17740, 10.1038/srep17740

Nakamura, 2020, ACS Chem. Biol., 15, 1004, 10.1021/acschembio.0c00024

Ishida, 2013, J. Am. Chem. Soc., 135, 12684, 10.1021/ja4046907

Shibata, 2014, Curr. Biol., 24, R463, 10.1016/j.cub.2014.03.033

Alber, 2007, Nature, 450, 695, 10.1038/nature06405

Kelich, 2014, Int. J. Mol. Sci., 15, 14492, 10.3390/ijms150814492

Fahrenkrog, 2003, Nat. Rev. Mol. Cell Biol., 4, 757, 10.1038/nrm1230

Christophe, 2000, Cell. Signalling, 12, 337, 10.1016/S0898-6568(00)00077-2

Ragin, 2002, Chem. Biol., 9, 943, 10.1016/S1074-5521(02)00189-8

Tkachenko, 2003, J. Am. Chem. Soc., 125, 4700, 10.1021/ja0296935

Giacomello, 2020, Nat. Rev. Mol. Cell Biol., 21, 204, 10.1038/s41580-020-0210-7

Kuhlbrandt, 2015, BMC Biol., 13, 89, 10.1186/s12915-015-0201-x

Taanman, 1999, Biochim. Biophys. Acta, Bioenerg., 1410, 103, 10.1016/S0005-2728(98)00161-3

Pfanner, 2019, Nat. Rev. Mol. Cell Biol., 20, 267, 10.1038/s41580-018-0092-0

Chacinska, 2002, Trends Cell Biol., 12, 299, 10.1016/S0962-8924(02)02310-3

Liu, 2017, Biophys. Rep., 3, 64, 10.1007/s41048-017-0037-8

Fukasawa, 2015, Mol. Cell. Proteomics, 14, 1113, 10.1074/mcp.M114.043083

Ross, 2006, Biochem. J, 400, 199, 10.1042/BJ20060919

Baracca, 2003, Biochim. Biophys. Acta, Bioenerg., 1606, 137, 10.1016/S0005-2728(03)00110-5

Zhang, 2020, J. Am. Chem. Soc., 142, 17069, 10.1021/jacs.0c06916

Battogtokh, 2018, Acta Pharm. Sin. B, 8, 862, 10.1016/j.apsb.2018.05.006

Miao, 2016, Biomaterials, 107, 33, 10.1016/j.biomaterials.2016.08.032

Denisov, 2014, Chem. Commun., 50, 15366, 10.1039/C4CC04996A

Scorrano, 1999, J. Biol. Chem., 274, 24657, 10.1074/jbc.274.35.24657

Trnka, 2015, PLoS One, 10, e0121837, 10.1371/journal.pone.0121837

Jean, 2016, Acc. Chem. Res., 49, 1893, 10.1021/acs.accounts.6b00277

Szeto, 2006, AAPS J., 8, E277, 10.1007/BF02854898

Berezowska, 2003, Peptides, 24, 1195, 10.1016/j.peptides.2003.07.004

Johnson, 2016, J. Cell Biol., 212, 677, 10.1083/jcb.201507112

Settembre, 2013, Nat. Rev. Mol. Cell Biol., 14, 283, 10.1038/nrm3565

Xu, 2015, Annu. Rev. Physiol., 77, 57, 10.1146/annurev-physiol-021014-071649

Braulke, 2009, Biochim. Biophys. Acta, 1793, 605, 10.1016/j.bbamcr.2008.10.016

Eskelinen, 2006, Mol. Aspects Med., 27, 495, 10.1016/j.mam.2006.08.005

Bohl, 2017, FASEB J., 31, 5258, 10.1096/fj.201700058RRRR

Cheng, 2018, Autophagy, 14, 1472, 10.1080/15548627.2018.1482147

Riccio, 2019, Bio-Protoc., 9, e3455, 10.21769/BioProtoc.3455

Lu, 2017, PLoS One, 12, e0173771, 10.1371/journal.pone.0173771

De Duve, 1974, Biochem. Pharmacol., 23, 2495, 10.1016/0006-2952(74)90174-9

Duvvuri, 2005, Mol. Pharm., 2, 440, 10.1021/mp050043s

The Molecular Probes® Handbook , Life Technologies, 11 edn, 2010

Lv, 2013, Anal. Chim. Acta, 788, 177, 10.1016/j.aca.2013.06.038

Wiedner, 2014, Angew. Chem., Int. Ed., 53, 2919, 10.1002/anie.201309135

Gan, 2003, Dyes Pigm., 57, 21, 10.1016/S0143-7208(02)00162-6

Zhang, 2016, ACS Sens., 1, 158, 10.1021/acssensors.5b00065

Duan, 2019, Chin. Chem. Lett., 30, 55, 10.1016/j.cclet.2018.03.016

Chen, 2015, Sci. Rep., 5, 9004, 10.1038/srep09004

Zhu, 2012, Chem. Commun., 48, 11766, 10.1039/c2cc36785h

Wang, 2019, Spectrochim. Acta, Part A, 221, 117175, 10.1016/j.saa.2019.117175

Fan, 2012, Bioconjugate Chem., 23, 1309, 10.1021/bc300143p

Pan, 2014, Nat. Commun., 5, 5573, 10.1038/ncomms6573

Turk, 2012, Biochim. Biophys. Acta, 1824, 68, 10.1016/j.bbapap.2011.10.002

Poreba, 2019, Chem. Sci., 10, 8461, 10.1039/C9SC00997C

Lencer, 1990, Am. J. Physiol., 258, C309, 10.1152/ajpcell.1990.258.2.C309

Doherty, 2009, Annu. Rev. Biochem., 78, 857, 10.1146/annurev.biochem.78.081307.110540

Taguchi, 2013, J. Biochem., 153, 505, 10.1093/jb/mvt034

Wandinger-Ness, 2014, Cold Spring Harbor Perspect. Biol., 6, a022616, 10.1101/cshperspect.a022616

Bucci, 2000, Mol. Biol. Cell, 11, 467, 10.1091/mbc.11.2.467

Hyttinen, 2013, Biochim. Biophys. Acta, 1833, 503, 10.1016/j.bbamcr.2012.11.018

Mu, 1995, J. Biol. Chem., 270, 13503, 10.1074/jbc.270.22.13503

Kobayashi, 2013, Commun. Integr. Biol., 6, e25036, 10.4161/cib.25036

Mukherjee, 1999, J. Cell Biol., 144, 1271, 10.1083/jcb.144.6.1271

Bento, 2016, Annu. Rev. Biochem., 85, 685, 10.1146/annurev-biochem-060815-014556

Yu, 2010, Nature, 465, 942, 10.1038/nature09076

Yoshii, 2017, Int. J. Mol. Sci., 18, 1865, 10.3390/ijms18091865

Runwal, 2019, Sci. Rep., 9, 10147, 10.1038/s41598-019-46657-z

Kimura, 2007, Autophagy, 3, 452, 10.4161/auto.4451

Itakura, 2012, Cell, 151, 1256, 10.1016/j.cell.2012.11.001

Tsuboyama, 2016, Science, 354, 1036, 10.1126/science.aaf6136

Guo, 2015, Autophagy, 11, 560, 10.1080/15548627.2015.1017181

Wanders, 2016, Front. Cell Dev. Biol., 3, 83, 10.3389/fcell.2015.00083

Beckman, 1998, Physiol. Rev., 78, 547, 10.1152/physrev.1998.78.2.547

Hettema, 1999, Biochim. Biophys. Acta, 1451, 17, 10.1016/S0167-4889(99)00087-7

Leon, 2006, Biochim. Biophys. Acta, 1763, 1552, 10.1016/j.bbamcr.2006.08.037

Walton, 1995, Mol. Biol. Cell, 6, 675, 10.1091/mbc.6.6.675

CellLight™ Peroxisome-GFP, BacMam 2.0, C10604, Thermo Fisher Scientific, https://www.thermofisher.com/order/catalog/product/C10604#/C10604

Yano, 2010, Mol. Cell. Biochem., 30, 3758, 10.1128/MCB.00121-10

Drago, 2008, J. Biol. Chem., 283, 14384, 10.1074/jbc.M800600200

Dansen, 2001, Histochem. J., 33, 65, 10.1023/A:1017927728892

Schwarz, 2016, Cell. Mol. Life Sci., 73, 79, 10.1007/s00018-015-2052-6

Malhotra, 2007, Semin. Cell Dev. Biol., 18, 716, 10.1016/j.semcdb.2007.09.003

Kall, 2004, J. Mol. Biol., 338, 1027, 10.1016/j.jmb.2004.03.016

Walter, 1994, Annu. Rev. Cell Biol., 10, 87, 10.1146/annurev.cb.10.110194.000511

Pelham, 1990, Trends Biochem. Sci., 15, 483, 10.1016/0968-0004(90)90303-S

Hyun, 2015, Traffic, 16, 787, 10.1111/tra.12281

Dayel, 1999, Biophys. J., 76, 2843, 10.1016/S0006-3495(99)77438-2

Vila-Carriles, 2007, FASEB J., 21, 18, 10.1096/fj.06-6730hyp

Zhou, 2007, J. Histochem. Cytochem., 55, 795, 10.1369/jhc.6A7104.2007

Ozanne, 1995, Diabetologia, 38, 277, 10.1007/BF00400631

Lee, 2014, Chem. Commun., 50, 3197, 10.1039/C4CC00091A

Lee, 2015, Bioconjugate Chem., 26, 2474, 10.1021/acs.bioconjchem.5b00508

Yang, 2014, Chem. Commun., 50, 11672, 10.1039/C4CC04915B

Danylchuk, 2021, J. Am. Chem. Soc., 143, 912, 10.1021/jacs.0c10972

Goujon, 2019, J. Am. Chem. Soc., 141, 3380, 10.1021/jacs.8b13189

Sekhar, 2019, Org. Biomol. Chem., 17, 3732, 10.1039/C9OB00408D

Zhao, 2019, Chem. Sci., 10, 9009, 10.1039/C9SC03111A

Zhang, 2013, J. Mater. Chem. B, 1, 5450, 10.1039/c3tb20646g

Meinig, 2015, Angew. Chem., Int. Ed., 54, 9696, 10.1002/anie.201504156

Thompson, 2017, Biochemistry, 56, 5194, 10.1021/acs.biochem.7b00545

Gronewold, 2018, Beilstein J. Org. Chem., 14, 1378, 10.3762/bjoc.14.116

Day, 2013, Histochem. Cell Biol., 140, 239, 10.1007/s00418-013-1128-3

Farquhar, 1981, J. Cell Biol., 91, 77s, 10.1083/jcb.91.3.77s

J.Lippincott-Schwartz , in Endoplasmic Reticulum , ed. N. Borgese and J. R. Harris , Springer US , Boston, MA , 1993 , pp. 95–119 , 10.1007/978-1-4615-2912-5_5

Banfield, 2011, Cold Spring Harbor Perspect. Biol., 3, a005264, 10.1101/cshperspect.a005264

Yamaguchi, 1995, J. Biol. Chem., 270, 12170, 10.1074/jbc.270.20.12170

Kneen, 1998, Biophys. J., 74, 1591, 10.1016/S0006-3495(98)77870-1

Wong, 1993, J. Biol. Chem., 268, 22853, 10.1016/S0021-9258(18)41606-7

K. J.Colley , A.Varki and T.Kinoshita , in Essentials of Glycobiology , ed. A. Varki , R. D. Cummings , J. D. Esko , P. Stanley , G. W. Hart , M. Aebi , A. G. Darvill , T. Kinoshita , N. H. Packer , J. H. Prestegard , R. L. Schnaar and P. H. Seeberger , Cold Spring Harbor , NY , 2015 , pp. 41–49 , 10.1101/glycobiology.3e.004

Rao, 2007, Proc. Natl. Acad. Sci. U. S. A., 104, 11364, 10.1073/pnas.0705049104

Melo, 2011, J. Histochem. Cytochem., 59, 540, 10.1369/0022155411404073

Ruggles, 2013, Annu. Rev. Nutr., 33, 413, 10.1146/annurev-nutr-071812-161254

Gao, 2015, Front. Cell Dev. Biol., 3, 49, 10.3389/fcell.2015.00049

Olzmann, 2019, Nat. Rev. Mol. Cell Biol., 20, 137, 10.1038/s41580-018-0085-z

Itabe, 2017, Lipids Health Dis., 16, 83, 10.1186/s12944-017-0473-y

Miura, 2002, J. Biol. Chem., 277, 32253, 10.1074/jbc.M204410200

Greenspan, 1985, J. Cell Biol., 100, 965, 10.1083/jcb.100.3.965

Greenspan, 1985, J. Lipid Res., 26, 781, 10.1016/S0022-2275(20)34307-8

Gocze, 1994, Cytometry, 17, 151, 10.1002/cyto.990170207

Ozdemir, 2009, Org. Lett., 11, 2105, 10.1021/ol9005568

Bernardino de la Serna, 2016, Front. Cell Dev. Biol., 4, 106, 10.3389/fcell.2016.00106

CellLight™ Plasma Membrane-GFP , BacMam 2.0, C10607, Thermo Fisher Scientific, https://www.thermofisher.com/order/catalog/product/C10607#/C10607

Lai, 2015, Nat. Commun., 6, 7029, 10.1038/ncomms8029

von Bartheld, 1990, J. Histochem. Cytochem., 38, 725, 10.1177/38.5.2185313

Parasassi, 1994, Biophys. J., 66, 763, 10.1016/S0006-3495(94)80852-5

Krasnowska, 1998, Biophys. J., 74, 1984, 10.1016/S0006-3495(98)77905-6

Fischer, 1984, Chem. Phys. Lipids, 36, 1, 10.1016/0009-3084(84)90086-0

Fletcher, 2010, Nature, 463, 485, 10.1038/nature08908

Hohmann, 2019, Cells, 8, 362, 10.3390/cells8040362

Nagasaki, 2017, Cell Struct. Funct., 42, 131, 10.1247/csf.17016

Bulinski, 2001, J. Cell Sci., 114, 3885, 10.1242/jcs.114.21.3885

Pang, 1998, Curr. Biol., 8, 405, 10.1016/S0960-9822(98)70159-9

Waterman-Storer, 1998, Biophys. J., 75, 2059, 10.1016/S0006-3495(98)77648-9

Feramisco, 1979, Proc. Natl. Acad. Sci. U. S. A., 76, 3967, 10.1073/pnas.76.8.3967

Clegg, 1984, Am. J. Physiol.: Regul., Integr. Comp. Physiol., 246, R133

Verkman, 2002, Trends Biochem. Sci., 27, 27, 10.1016/S0968-0004(01)02003-5

Rizzuto, 1995, Curr. Biol., 5, 635, 10.1016/S0960-9822(95)00128-X

Bindels, 2017, Nat. Methods, 14, 53, 10.1038/nmeth.4074

Pakhomov, 2017, BioTechniques, 63, 77, 10.2144/000114577

Gao, 2002, J. Phys. Chem. A, 106, 1956, 10.1021/jp011980s

Han, 2010, Chem. Rev., 110, 2709, 10.1021/cr900249z

Los, 2008, ACS Chem. Biol., 3, 373, 10.1021/cb800025k

Keppler, 2003, Nat. Biotechnol., 21, 86, 10.1038/nbt765

Gautier, 2008, Chem. Biol., 15, 128, 10.1016/j.chembiol.2008.01.007

Perry, 2011, BioTechniques, 50, 98, 10.2144/000113610

Smith, 2008, Ann. N. Y. Acad. Sci., 1147, 105, 10.1196/annals.1427.003

B.Alberts , A.Johnson , J.Lewis , D.Morgan , M.Raff , K.Roberts and P.Walter , Molecular Biology of the Cell , Garland Science , New York , 6th ed., 2015 , pp. 666–669