Steric Interference Modification of the Hammerhead Ribozyme
Tài liệu tham khảo
Dahm, 1991, Role of divalent metal ions in the hammerhead RNA cleavage reaction, Biochemistry, 30, 9464, 10.1021/bi00103a011
Hertel, 1997, Use of intrinsic binding energy for catalysis by an RNA enzyme, Proc. Natl. Acad. Sci. USA, 94, 8497, 10.1073/pnas.94.16.8497
Dahm, 1993, Evidence for the role of solvated metal hydroxide in the hammerhead cleavage mechanism, Biochemistry, 32, 13040, 10.1021/bi00211a013
Murray, 2000, Capture and visualization of catalytic RNA enzyme-product complex using crystal lattice trapping and X-ray holographic reconstruction, Mol. Cell, 5, 279, 10.1016/S1097-2765(00)80423-2
Soukup, 1999, Relationship between internucleotide linkage geometry and the stability of RNA, RNA, 5, 1308, 10.1017/S1355838299990891
Pley, 1994, Three-dimensional structure of a hammerhead ribozyme, Nature, 372, 68, 10.1038/372068a0
Scott, 1995, The crystal structure of an all-RNA hammerhead ribozyme, Cell, 81, 991, 10.1016/S0092-8674(05)80004-2
McKay, 1996, Structure and function of the hammerhead ribozyme, RNA, 2, 395
van Tol, 1990, Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration, Nucleic Acids Res., 18, 1971, 10.1093/nar/18.8.1971
Scott, 1996, Capturing the structure of a catalytic RNA intermediate, Science, 274, 2065, 10.1126/science.274.5295.2065
Murray, 1988, The structural basis of hammerhead ribozyme self cleavage, Cell, 92, 665, 10.1016/S0092-8674(00)81134-4
Peracchi, 1997, Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation, J. Biol. Chem., 272, 8497, 10.1074/jbc.272.43.26822
Wang, 1999, Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate, Biochemistry, 38, 14363, 10.1021/bi9913202
Yang, 1992, Minimum ribonucleotide requirement for catalysis by the RNA hammerhead domain, Biochemistry, 31, 5005, 10.1021/bi00136a013
Tanaka, 1993, Importance of specific purine-pyrimidine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme, Nucleic Acids Symp. Ser., 29, 175
Tuschl, 1993, Importance of exocyclic base functional groups of central core guanosines for hammerhead ribozyme activity, Biochemistry, 32, 11658, 10.1021/bi00094a023
Fu, 1992, Importance of specific purine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme, Proc. Natl. Acad. Sci. USA, 89, 3985, 10.1073/pnas.89.9.3985
Perreault, 1991, Relationship between 2′-hydroxyls and magnesium binding in the hammerhead RNA doman, Biochemistry, 30, 4020, 10.1021/bi00230a029
Olsen, 1991, Study of a hammerhead ribozyme containing 2′-modified adenosine residues, Biochemistry, 30, 9735, 10.1021/bi00104a024
Hertel, 1994, A kinetic and thermodynamic framework for the hammerhead ribozyme reaction, Biochemistry, 33, 3374, 10.1021/bi00177a031
Stage-Zimmermann, 2001, A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase, Nat. Struct. Biol., 8, 863, 10.1038/nsb1001-863
Blount, 2002, Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links, Biochemistry, 41, 6834, 10.1021/bi025596c
Stage-Zimmermann, 1998, Hammerhead ribozyme kinetics, RNA, 4, 875, 10.1017/S1355838298980876
Sigurdsson, 1996, Site specific labelling of sugar residues in oligoribonucleotides, Nucleic Acids Res., 24, 3129, 10.1093/nar/24.16.3129
Hertel, 1995, The internal equilibrium of the hammerhead ribozyme reaction, Biochemistry, 34, 1744, 10.1021/bi00005a031
Hendrix, 1995, Incorporation of 2′-amido-nucleosides in oligodeoxynucleotides and oligoribonucleotides as a model for 2′-linked conjugates, Nucleic Acids Res., 23, 51, 10.1093/nar/23.1.51
O'Rear, 2001, Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations, RNA, 7, 537, 10.1017/S1355838201002461
Curtis, 2001, Role of metal ions in the hammerhead RNA cleavage reaction, RNA, in press
Heidenreich, 1994, High activity and stability of hammerhead ribozymes containing 2′-modified pyrimidine nucleosides and phosphorothioates, J. Biol. Chem., 269, 2131, 10.1016/S0021-9258(17)42145-4
Paolella, 1992, Nuclease resistant ribozymes with high catalytic activity, EMBO J., 11, 1913, 10.1002/j.1460-2075.1992.tb05244.x
Hendrix, 1995, Catalytic activity and stability of hammerhead ribozymes containing 2′-acetamido-2′-deoxyribonucleosides, Biochem. Biophys. Res. Commun., 210, 67, 10.1006/bbrc.1995.1628
Saenger, W. (1988). Principles of nucleic acid structure (New York, Springer-Verlag).
Lamond, 1993, Antisense oligonucleotides made of 2′-O-alkylRNA, FEBS Lett., 325, 123, 10.1016/0014-5793(93)81427-2
Hagler, 1976, Experimental and theoretical studies of the barrier to rotation about the N-Cα and Cα-C′ bonds (φ and Ψ) in amides and peptides, J. Am. Chem. Soc., 98, 4600, 10.1021/ja00431a045
Gaspar, 1983, Ab initio molecular fragment calculations with pseudopotentials, Int. J. Quantum Chem., 24, 767, 10.1002/qua.560240617
Searle, 1992, The cost of conformational order, J. Am. Chem. Soc., 114, 10690, 10.1021/ja00053a002
Kim, 1998, The nature of rotational barriers of the C-N bond in thioamides and the origin of the nonplanarity for thiourea, Journal of the Chemical Society Faraday Transactions, 94, 2663, 10.1039/a803947j
Heitman, 1993, On the origins, structures and functions of restriction-modification enzymes, Genet. Eng., 15, 57, 10.1007/978-1-4899-1666-2_4
Usman, 1987, Automated chemical synthesis of long oligoribonucleotides using 2′-O-silylated ribonucleoside 3′-O-phosphoramidites on a controlled-pore glass support, J. Am. Chem. Soc., 109, 7845, 10.1021/ja00259a037
Scaringe, 1998, Novel RNA synthesis method using 5′-O-silyl-2′-O-orthoester protecting groups, J. Am. Chem. Soc., 120, 11820, 10.1021/ja980730v
Hertel, 1992, Numbering system for the hammerhead, Nucleic Acids Res., 20, 3252, 10.1093/nar/20.12.3252