Specific response mechanism to autotoxicity in melon (Cucumis melo L.) root revealed by physiological analyses combined with transcriptome profiling

Ecotoxicology and Environmental Safety - Tập 200 - Trang 110779 - 2020
Zhizhong Zhang1, Zhengda Zhang2,1, Xiaoyun Han1, Jinghua Wu1, Lizhen Zhang1, Jingrong Wang1, Gefu Wang-Pruski3,1
1Joint FAFU-Dalhousie Lab, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
2College of Horticulture, Northwest Agriculture and Forestry University, Yangling, 712100, China
3Department of Plant, Food and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Truro, NS B2N 5E3, Canada

Tài liệu tham khảo

Baerson, 2008, Probing allelochemical biosynthesis in sorghum root hairs, Plant Signal. Behav., 3, 667, 10.4161/psb.3.9.5779 Bennett, 2012, Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations, Biol. Rev., 87, 52, 10.1111/j.1469-185X.2011.00184.x Bennett, 2019, Mechanisms of plant-soil feedback: interactions among biotic and abiotic drivers, New Phytol., 222, 91, 10.1111/nph.15603 Cartenì, 2016, Self-DNA inhibitory effects: underlying mechanisms and ecological implications, Plant Signal. Behav., 11, 10.1080/15592324.2016.1158381 Chatterjee, 2017, Mechanisms of DNA damage, repair, and mutagenesis, Environ. Mol. Mutagen., 58, 235, 10.1002/em.22087 Chen, 2018, 289660 Chen, 2018, Cucumber (Cucumis sativus L.) seedling rhizosphere Trichoderma and Fusarium spp. communities altered by vanillic acid, Front. Microbiol., 9, 2195, 10.3389/fmicb.2018.02195 Cheng, 2016, Transcriptomic insights into the allelopathic effects of the garlic allelochemical diallyl disulfide on tomato roots, Sci. Rep., 6, 38902, 10.1038/srep38902 Davey, 2005, High-throughput determination of malondialdehyde in plant tissues, Anal. Biochem., 347, 201, 10.1016/j.ab.2005.09.041 Franco, 2009, Environmental toxicity, oxidative stress and apoptosis: menage a trois, Mutat. Res-Gen. Tox. En., 674, 3, 10.1016/j.mrgentox.2008.11.012 Friedman, 2017, Allelopathy, autotoxicity, and germination García-Sánchez, 2012, Defence response of tomato seedlings to oxidative stress induced by phenolic compounds from dry olive mill residue, Chemosphere, 89, 708, 10.1016/j.chemosphere.2012.06.026 Hoagland, 1938, The water culture method for growing plants without soil, Calif. Agric. Exp. Stn., 347, 1 Hu, 2017, Soil environmental quality in greenhouse vegetable production systems in eastern China: current status and management strategies, Chemosphere, 170, 183, 10.1016/j.chemosphere.2016.12.047 Huang, 2017, Melon fruit sugar and amino acid contents are affected by fruit setting method under protected cultivation, Sci. Hortic., 214, 288, 10.1016/j.scienta.2016.11.055 Jespersen, 2017, Metabolic effects of acibenzolar-Smethyl for improving heat or drought stress in creeping bentgrass, Front. Plant Sci., 8, 1224, 10.3389/fpls.2017.01224 Jung, 2013, Getting to the roots of it: genetic and hormonal control of root architecture, Front. Plant Sci., 4, 186, 10.3389/fpls.2013.00186 Kato-Noguchi, 2017, Asparagus decline: autotoxicity and autotoxic compounds in asparagus rhizomes, J. Plant Physiol., 213, 23, 10.1016/j.jplph.2017.02.011 Kim, 2019, Protective effects of melon extracts on bone strength, mineralization, and metabolism in rats with ovariectomy-induced osteoporosis, Antioxidants, 8, 306, 10.3390/antiox8080306 Kim, 2015, HISAT: a fast spliced aligner with low memory requirements, Nat. Methods, 12, 357, 10.1038/nmeth.3317 Klotz, 2003, Defenses against peroxynitrite: selenocompounds and flavonoids, Toxicol. Lett., 140, 125, 10.1016/S0378-4274(02)00511-8 Kobayashi, 2010, Chemical inhibitors of viviparous germination in the fruit of watermelon, Plant Cell Physiol., 51, 1594, 10.1093/pcp/pcq103 Langmead, 2012, Fast gapped-read alignment with Bowtie 2, Nat. Methods, 9, 357, 10.1038/nmeth.1923 Lavell, 2019, Cellular organization and regulation of plant glycerolipid metabolism, Plant Cell Physiol., 60, 1176, 10.1093/pcp/pcz016 Li, 2011, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome, BMC Bioinf., 12, 323, 10.1186/1471-2105-12-323 Li, 2012, Effect of sulfur dioxide on ROS production, gene expression and antioxidant enzyme activity in Arabidopsis plants, Plant Physiol. Biochem. (Paris), 58, 46, 10.1016/j.plaphy.2012.06.009 Li, 2016, DNA mismatch repair and the DNA damage response, DNA Repair, 38, 94, 10.1016/j.dnarep.2015.11.019 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method, Methods, 25, 402, 10.1006/meth.2001.1262 Luo, 2018, Aux/IAA gene family in plants: molecular structure, regulation, and function, Int. J. Mol. Sci., 19, 259, 10.3390/ijms19010259 Mittler, 2002, Oxidative stress, antioxidants and stress tolerance, Trends Plant Sci., 7, 405, 10.1016/S1360-1385(02)02312-9 Mittler, 2004, Reactive oxygen gene network of plants, Trends Plant Sci., 9, 490, 10.1016/j.tplants.2004.08.009 Noctor, 2015, The metabolomics of oxidative stress, Phytochemistry, 112, 33, 10.1016/j.phytochem.2014.09.002 Nuruzzaman, 2014, Plant pleiotropic drug resistance transporters: transport mechanism, gene expression, and function, J. Integr. Plant Biol., 56, 729, 10.1111/jipb.12196 Rady, 2016, Sequenced application of ascorbate-proline-glutathione improves salt tolerance in maize seedlings, Ecotoxicol. Environ. Saf., 133, 252, 10.1016/j.ecoenv.2016.07.028 Ren, 2017, Allelochemicals from rhizosphere soils of Glycyrrhiza uralensis Fisch: discovery of the autotoxic compounds of a traditional herbal medicine, Ind. Crop. Prod., 97, 302, 10.1016/j.indcrop.2016.12.035 Roviello, 2016, Nucleic acid binding and other biomedical properties of artificial oligolysines, Int. J. Nanomed., 11, 5897, 10.2147/IJN.S121247 Santhanam, 2015, Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping, P. Natl. Acad. Sci., 112, E5013, 10.1073/pnas.1505765112 Schuler, 2018, Galactose metabolism and toxicity in Ustilago maydis, Fungal Genet. Biol., 114, 42, 10.1016/j.fgb.2018.03.005 Soltys, 2012, Inhibition of tomato (Solanum lycopersicum L.) root growth by cyanamide is due to altered cell division, phytohormone balance and expansin gene expression, Planta, 236, 1629, 10.1007/s00425-012-1722-y Soltys, 2014, Phytotoxic cyanamide affects maize (Zea mays) root growth and root tip function: from structure to gene expression, J. Plant Physiol., 171, 565, 10.1016/j.jplph.2014.01.004 Sun, 2019, Autotoxicity of root exudates varies with species identity and soil phosphorus, Ecotoxicology, 28, 429, 10.1007/s10646-019-02035-z Tsai, 2005, Expression of ascorbate peroxidase and glutathione reductase in roots of rice seedlings in response to NaCl and H2O2, J. Plant Physiol., 162, 291, 10.1016/j.jplph.2004.06.004 Turhal, 2019, Hydrogen production from melon and watermelon mixture by dark fermentation, Int. J. Hydrogen Energy, 44, 18811, 10.1016/j.ijhydene.2018.10.011 Wang, 2015, Exogenous gibberellin altered morphology, anatomic and transcriptional regulatory networks of hormones in carrot root and shoot, BMC Plant Biol., 15, 290, 10.1186/s12870-015-0679-y Wang, 2009, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, 26, 136, 10.1093/bioinformatics/btp612 Weston, 2013, Sorghum allelopathy-from ecosystem to molecule, J. Chem. Ecol., 39, 142, 10.1007/s10886-013-0245-8 Xin, 2019, The accumulation of reactive oxygen species in root tips caused by autotoxic allelochemicals-A significant factor for replant problem of Angelica sinensis (Oliv.) Diels, Ind. Crop. Prod., 138, 111432, 10.1016/j.indcrop.2019.05.081 Yang, 2014, Root exudates from muskmelon (Cucumis melon. L) induce autotoxicity and promote growth of Fusarium oxysporum f. sp. melonis, Allelopathy J., 33, 175 Zhou, 2014, Influence of cysteine and methionine availability on protein peroxide scavenging activity and phenolic stability in emulsions, Food Chem., 146, 521, 10.1016/j.foodchem.2013.09.082 Zhu, 2018, Potential use of high-throughput sequencing of soil microbial communities for estimating the adverse effects of continuous cropping on ramie (Boehmeria nivea L. Gaud), PloS One, 13, 10.1371/journal.pone.0197095