Species-specific polymorphisms in transcribed ribosomal DNA of fivePythium species

Experimental Mycology - Tập 16 Số 1 - Trang 22-34 - 1992
Weidong Chen1,2, J. W. Hoy3, R. W. Schneider3
1Center for Biodiversity, Illinois Natural History Survey, 607 East Peabody Drive, Champaign, Illinois 61820 USA
2Department of Plant Pathology, University of Illinois at Urbana-Champaign, 607 East Peabody Drive, Champaign, Illinois 61820 USA
3Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, Louisiana, 70803, USA

Tóm tắt

Từ khóa


Tài liệu tham khảo

Anderson, 1989, Variation in ribosomal DNA among biological species ofArmillaria, a genus of root-infecting fungi, Evolution, 43, 1652, 10.2307/2409381

Arnheim, 1990, Application of PCR: Organismal and population biology, BioScience, 40, 174, 10.2307/1311362

Appels, 1986, rDNA: Evolution over a billion years, Vol. 2, 81

Buckner, 1988, Organization of the ribosomal RNA genes ofSchizophyllum commune, Curr. Genet., 13, 417, 10.1007/BF00365663

Chen, 1990, Variation observed in ribosomal DNA ofPythium spp. agrees with isozyme analysis results, Phytopathology, 80, 964

Chen, 1991, Comparisons of soluble proteins and isozymes for sevenPythium species and applications of the biochemical data toPythium systematics, Mycol. Res., 95, 548, 10.1016/S0953-7562(09)80067-1

Dowling, 1990, Nucleic acids. II. Restriction site analysis, 250

Fo¨rster, 1990, Mitochondrial and nuclear DNA diversity within six species ofPhytophthora, Exp. Mycol., 14, 18, 10.1016/0147-5975(90)90083-6

Furlong, 1983, Patterns of major divergence between the internal transcribed spacers of ribosomal DNA inXenopus borealis andXenopus laevis and of minimal divergence with ribosomal coding regions, EMBO J., 2, 443, 10.1002/j.1460-2075.1983.tb01442.x

Garber, 1988, Organization of ribosomal RNA genes in the fungusCochliobolus heterostrophus, Curr. Genet., 14, 573, 10.1007/BF00434083

Gardes, 1991, Identification of indigenous and introduced symbiotic fungi in ectomycorrhisae by amplification of nuclear and mitochondrial ribosomal DNA, Can. J. Bot., 69, 180, 10.1139/b91-026

Hendrix, 1974, Taxonomy and genetics ofPythium, 1, 200

Hoy, 1988, Role ofPythium in sugarcane stubble decline: Pathogenicity and virulence ofPythium species, Phytopathology, 78, 1688, 10.1094/Phyto-78-1688

Jorgensen, 1988, Modes and tempos in the evolution of nuclear ribosomal DNA: New characters for evolutionary studies and new markers for genetic and population studies, Ann. Missouri Bot. Gard., 75, 1238, 10.2307/2399282

Kistler, 1987, Relatedness of strains ofFusarium oxysporum from crucifers measured by examination of mitochondrial and ribosomal DNA, Phytopathology, 77, 1289, 10.1094/Phyto-77-1289

Klassen, 1990, Subrepeat structure of the intergenic region in the ribosomal DNA of the oomycetous fungusPythium ultimum, Curr. Genet., 17, 125, 10.1007/BF00312856

Klassen, 1987, Comparison of physical maps of ribosomal DNA repeating units inPythium, Phytophthora andApodachya, J. Gen. Microbiol., 133, 2953

Kohn, 1988, Restriction fragment length polymorphisms in nuclear and mitochondrial DNA ofSclerotina species, Phytopathology, 78, 1047, 10.1094/Phyto-78-1047

Laaser, 1989, Ribosomal DNA restriction fragment analysis as a taxonomic tool in separating physiologically similar basidiomycetous yeasts, Syst. Appl. Microbiol., 11, 170, 10.1016/S0723-2020(89)80057-8

Lee, 1990, Isolation of DNA from fungal mycelia and single cells, 282

Maniatis, 1982

Martin, 1990, Taxonomic classification of asexual isolates ofPythium ultimum based on cultural characteristic and mitochondrial DNA restriction patterns, Exp. Mycol., 14, 47, 10.1016/0147-5975(90)90085-8

Martin, 1990, Variation in the ribosomal DNA repeat unit within single-oospore isolates of the genusPythium, Genome, 33, 585, 10.1139/g90-086

Martin, 1990, Species-specific banding patterns of restriction endonuclease-digested mitochondrial DNA from genusPythium, Exp. Mycol., 14, 32, 10.1016/0147-5975(90)90084-7

Medlin, 1988, The characterization of enzymatically amplified eukaryotic 16s-like rRNA-coding regions, Gene, 71, 491, 10.1016/0378-1119(88)90066-2

Molnar, 1989, Polymorphism in the ribosomal DNA repeat units of 12Hordeum species, Genome, 32, 1124, 10.1139/g89-565

Mullis, 1987, Specific synthesis of DNAin vitro via a polymerase-catalyzed chain reaction, Methods in Enzymology, 155, 335, 10.1016/0076-6879(87)55023-6

Nelson, 1990, Genetic studies in the genusBasidiobolus. II. Phylogenetic relationships inferred from ribosomal DNA analysis, Exp. Mycol., 14, 197, 10.1016/0147-5975(90)90017-N

Rogers, 1989, Extraction of DNA from Basidiomycetes for ribosomal DNA hybridization, Can. J. Bot., 67, 1235, 10.1139/b89-161

Rohlf, 1988

Rosek, 1979, Restriction endonuclease mapping by crossed contact hybridization: The ribosomal RNA genes ofAchlya ambisexialis, Nucleic Acids Res., 7, 1567, 10.1093/nar/7.6.1567

Russell, 1984, Organization of the ribosomal ribonucleic acid genes in various wild-type strains and wild-collected strains ofNeurospora, Mol. Gen. Genet., 196, 275, 10.1007/BF00328060

Saiki, 1988, Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase, Science, 239, 487, 10.1126/science.2448875

Sneath, 1973

Steffan, 1988, DNA amplification to enhance detection of genetically engineered bacteria in environmental samples, Appl. Environ. Microb., 54, 2185, 10.1128/AEM.54.9.2185-2191.1988

Swofford, 1990, PAUP: Phylogenetic Analysis Using Parsimony

Swofford, 1990, Phylogeny reconstruction, 411

Taylor, 1986, Fungal evolutionary biology and mitochondrial DNA, Exp. Mycol., 10, 259, 10.1016/0147-5975(86)90011-3

van der Plaats-Niterink, 1981, Monograph of the genusPythium

White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315

Zehr, 1989, Use of degenerate oligonucleotides for amplification of the nifH gene from the marine CyanobacteriumTrichodesmium thiebautii, Appl. Environ. Microbiol., 55, 2522, 10.1128/AEM.55.10.2522-2526.1989