Spatial variability in picophytoplankton, bacteria and viruses in waters of the Great Australian Bight (southern Australia)

Alongi, 2015, Phytoplankton, bacterioplankton and virioplankton structure and function across the southern Great Barrier Reef shelf, J. Mar. Syst., 142, 25, 10.1016/j.jmarsys.2014.09.010 Anderson, 2008 Baudoux, 2008, Estimates of virus- vs. grazing induced mortality of picophytoplankton in the North Sea during summer, Aquat. Microb. Ecol., 52, 69, 10.3354/ame01207 Bianchi, 2013, Diel vertical migration: ecological controls and impacts on the biological pump in a one-dimensional ocean model, Glob. Biogeochem. Cycles, 27, 478, 10.1002/gbc.20031 Bouvier, 2007, A comparative study of the cytometric characteristics of high and low nucleic-acid bacterioplankton cells from different aquatic ecosystems, Environ. Microbiol., 9, 2050, 10.1111/j.1462-2920.2007.01321.x Brussaard, 2004, Optimization of procedures for counting viruses by flow cytometry, Appl. Environ. Microbiol., 70, 1506, 10.1128/AEM.70.3.1506-1513.2004 Brussaard, 2000, Flow cytometric detection of viruses, J. Virol. Methods, 85, 175, 10.1016/S0166-0934(99)00167-6 Brussaard, 2008, Virioplankton dynamics and virally induced phytoplankton lysis versus microzooplankton grazing southeast of the Kerguelen (Southern Ocean), Deep-Sea Res. II, 55, 752, 10.1016/j.dsr2.2007.12.034 Buitenhuis, 2012, Picoheterotroph (bacteria and Archaea) biomass distribution in the global ocean, Earth Syst. Sci. Data, 4, 101, 10.5194/essd-4-101-2012 Buitenhuis, 2012, Picophytoplankton biomass distribution in the global ocean, Earth Syst. Sci. Data, 4, 37, 10.5194/essd-4-37-2012 Calbet, 2004, Phytoplankton growth, microzooplankton grazing, and carbon cycling in marine systems, Limnol. Oceanogr., 49, 51, 10.4319/lo.2004.49.1.0051 Calvo-Díaz, 2006, Seasonal dynamics of picoplankton in shelf waters of the southern Bay of Biscay, Aquat. Microb. Ecol., 42, 159, 10.3354/ame042159 Calvo-Díaz, 2004, Picoplankton community structure along the northern Iberian continental margin in late winter–early spring, J. Plankton Res., 26, 1069, 10.1093/plankt/fbh098 Christaki, 2005, Grazing impact of different heterotrophic nanoflagellates on eukaryotic (Ostreococcus tauri) and prokaryotic picoautotrophs (Prochlorococcus and Synechococcus), Environ. Microbiol., 7, 1200, 10.1111/j.1462-2920.2005.00800.x Clarke, K.R., Warwick, R.M., 2001. Changes in marine communities: an approach to statistical analysis and interpretation (PRIMER-E). Plymouth, UK. Collado-Fabbri, 2011, Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem, Limnol. Oceanogr., 56, 2334, 10.4319/lo.2011.56.6.2334 Crosbie, 2001, Abundance, distribution and flow-cytometric characterization of picophytoprokaryote populations in central (17°S) and southern (20°S) shelf waters of the Great Barrier Reef, J. Plankton Res., 23, 809, 10.1093/plankt/23.8.809 del Giorgio, 1995, Increase in the proportion of metabolically active bacteria along gradients of enrichment in freshwater and marine plankton: implications for estimates of bacterial growth and production rates, J. Plankton Res., 17, 1905, 10.1093/plankt/17.10.1905 DuRand, 2001, Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea, Deep Sea Res. Part II: Top. Stud. Oceanogr., 48, 1983, 10.1016/S0967-0645(00)00166-1 Evans, 2011, Potential climate change impacts on microbial distribution and carbon cycling in the Australian Southern Ocean, Deep Sea Res. Part II: Top. Stud. Oceanogr., 58, 2150, 10.1016/j.dsr2.2011.05.019 Flombaum, 2013, Present and future global distributions of the marine cyanobacteria Prochlorococcus and Synechococcus, Proc. Natl. Acad. Sci. USA, 110, 9824, 10.1073/pnas.1307701110 Fuhrman, 1999, Marine viruses and their biogeochemical effects, Nature, 399, 541, 10.1038/21119 Fukuda, 1998, Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments, Appl. Environ. Microbiol., 64, 3352, 10.1128/AEM.64.9.3352-3358.1998 Gasol, 2000, Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities, Sci. Mar., 64, 197, 10.3989/scimar.2000.64n2197 Gasol, 1997, Biomass distribution in marine planktonic communities, Limnol. Oceanogr., 42, 1353, 10.4319/lo.1997.42.6.1353 Geider, 1987, Light and temperature dependence of the carbon to chlorophyll a ratio in microalgae and cyanobacteria: implications for physiology and growth of phytoplankton, New Phytol., 106, 1, 10.1111/j.1469-8137.1987.tb04788.x Gill, 1982 Goldsworthy, 2013, Trophodynamics of the eastern Great Australian Bight ecosystem: ecological change associated with the growth of Australia's largest fishery, Ecol. Model., 255, 38, 10.1016/j.ecolmodel.2013.01.006 Grob, 2007, Contribution of picoplankton to the total particulate organic carbon concentration in the eastern South Pacific, Biogeosciences, 4, 837, 10.5194/bg-4-837-2007 Grob, 2007, Picoplankton abundance and biomass across the eastern South Pacific Ocean along latitude 32.5 degrees S, Mar. Ecol. Prog. Ser., 332, 53, 10.3354/meps332053 Grob, 2013, Elemental composition of natural populations of key microbial groups in Atlantic waters, Environ. Microbiol., 15, 3054 Holte, 2009, A new algorithm for finding mixed layer depths with applications to argo data and Subantarctic mode water formation, J. Atmos. Ocean. Technol., 26, 1920, 10.1175/2009JTECHO543.1 Johnson, 2006, Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients, Science, 311, 1737, 10.1126/science.1118052 Kämpf, 2004, Evidence of a large seasonal coastal upwelling system along the southern shelf of Australia, Geophys. Res. Lett., 31, L09310, 10.1029/2003GL019221 Legendre, 1995, Plankton and nutrient dynamics in marine waters, Ophelia, 41, 153, 10.1080/00785236.1995.10422042 Linacre, 2015, Distribution pattern of picoplankton carbon biomass linked to mesoscale dynamics in the southern gulf of Mexico during winter conditions, Deep Sea Res. Part I: Oceanogr. Res. Pap., 106, 55, 10.1016/j.dsr.2015.09.009 Linacre, 2010, Picoplankton dynamics during contrasting seasonal oceanographic conditions at a coastal upwelling station off Northern Baja California, México, J. Plankton Res., 32, 539, 10.1093/plankt/fbp148 Liu, 2009, Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans, Proc. Natl. Acad. Sci. USA, 106, 12803, 10.1073/pnas.0905841106 Lynch, 2014, IMOS national reference stations: a continental-wide physical, chemical and biological coastal observing system, PLoS One, 9, e113652, 10.1371/journal.pone.0113652 Marie, 1999, Enumeration of phytoplankton, bacteria, and viruses in marine samples, suppl. 10, 11.11.11 McClatchie, 2006, Water mass analysis and alongshore variation in upwelling intensity in the eastern Great Australian Bight, J. Geophys. Res.: Oceans, 111 Middleton, 2007, A review of the shelf-slope circulation along Australia's southern shelves: Cape Leeuwin to Portland, Prog. Oceanogr., 75, 1, 10.1016/j.pocean.2007.07.001 Morán, 2002, Dissolved primary production and the strength of phytoplankton-bacterioplankton coupling in contrasting marine regions, Microb. Ecol., 44, 217, 10.1007/s00248-002-1026-z Mouriño-Carballido, 2011, Importance of N2 fixation vs. nitrate eddy diffusion along a latitudinal transect in the Atlantic Ocean, Limnol. Oceanogr., 56, 999, 10.4319/lo.2011.56.3.0999 Mouriño-Carballido, 2016, Nutrient supply controls picoplankton community structure during three contrasting seasons in the northwestern Mediterranean Sea, Mar. Ecol. Prog. Ser., 10.3354/meps11558 Painter, 2014, Picoeukaryote distribution in relation to nitrate uptake in the oceanic nitracline, Aquat. Microb. Ecol., 72, 195, 10.3354/ame01695 Partensky, 1999, Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review, 457 Pasulka, 2015, Grazer and viral impacts on microbial growth and mortality in the southern California Current Ecosystem, J. Plankton Res., 37, 320, 10.1093/plankt/fbv011 Paterson, 2012, A local upwelling controls viral and microbial community structure in South Australian continental shelf waters, Estuar. Coast. Shelf Sci., 96, 197, 10.1016/j.ecss.2011.11.009 Paterson, 2013, Population-specific shifts in viral and microbial abundance within a cryptic upwelling, J. Mar. Syst., 113–114, 52, 10.1016/j.jmarsys.2012.12.009 Patten, 2011, Uptake of picophytoplankton, bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef, Australia), Coral Reefs, 30, 555, 10.1007/s00338-011-0777-8 Richardson, 2009, Analysis of hydrographic and stable isotope data to determine water masses, circulation, and mixing in the eastern Great Australian Bight, J. Geophys. Res.: Oceans, 114 Rogers, 2015, Living on the continental shelf edge: habitat use of juvenile shortfin makos Isurus oxyrinchus in the Great Australian Bight, southern Australia, Fish. Oceanogr., 24, 205, 10.1111/fog.12103 Sherr, 1994, Bacterivory and herbivory: key roles of phagotrophic protists in pelagic food webs, Microb. Ecol., 28, 223, 10.1007/BF00166812 Sherr, 2005, Distribution of coccoid cyanobacteria and small eukaryotic phytoplankton in the upwelling ecosystem off the Oregon coast during 2001 and 2002, Deep Sea Res. Part II: Top. Stud. Oceanogr., 52, 317, 10.1016/j.dsr2.2004.09.020 Simpson, 1981, Models of stratification and frontal movement in shelf seas, Deep Sea Res. Part A Oceanogr. Res. Pap., 28, 727, 10.1016/0198-0149(81)90132-1 Stockner, 1988, Phototrophic picoplankton: an overview from marine and freshwater ecosystems, Limnol. Oceanogr., 33, 765 Taniguchi, 2014, Size-specific growth and grazing rates for picophytoplankton in coastal and oceanic regions of the eastern Pacific, Mar. Ecol. Prog. Ser., 509, 87, 10.3354/meps10895 Troussellier, 1999, Flow cytometric discrimination of bacterial populations in seawater based on SYTO 13 staining of nucleic acids, FEMS Microbiol. Ecol., 29, 319, 10.1111/j.1574-6941.1999.tb00623.x van Dongen-Vogels, 2011, Influence of local physical events on picophytoplankton spatial and temporal dynamics in South Australian continental shelf waters, J. Plankton Res., 33, 1825, 10.1093/plankt/fbr077 van Dongen-Vogels, 2012, Shifts in picophytoplankton community structure influenced by changing upwelling conditions, Estuar. Coast. Shelf Sci., 109, 81, 10.1016/j.ecss.2012.05.026 Van Heukelem, 2001, Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments, J. Chromatogr., 910, 31, 10.1016/S0378-4347(00)00603-4 van Ruth, 2010, Hot-spots of primary productivity: an Alternative interpretation to Conventional upwelling models, Estuar. Coast. Shelf Sci., 90, 142, 10.1016/j.ecss.2010.08.009 van Ruth, 2010, The influence of mixing on primary productivity: a unique application of classical critical depth theory, Prog. Oceanogr., 85, 224, 10.1016/j.pocean.2010.03.002 Vaulot, 2008, The diversity of small eukaryotic phytoplankton (≤ 3 μm) in marine ecosystems, FEMS Microbiol. Rev., 32, 795, 10.1111/j.1574-6976.2008.00121.x Ward, 2006, Pelagic ecology of a northern boundary current system: effects of upwelling on the production and distribution of sardine (Sardinops sagax), anchovy (Engraulis australis) and southern bluefin tuna (Thunnus maccoyii) in the Great Australian Bight, Fish. Oceanogr., 15, 191, 10.1111/j.1365-2419.2006.00353.x Weinbauer, 1995, Significance of viruses versus heterotrophic nanoflagellates for controlling bacterial abundance in the northern Adriatic Sea, J. Plankton Res., 17, 1851, 10.1093/plankt/17.9.1851 Weitz, 2015, A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes, ISME J., 9, 1352, 10.1038/ismej.2014.220 Worden, 2004, Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component, Limnol. Oceanogr., 49, 168, 10.4319/lo.2004.49.1.0168 Wu, 2014, Effects of coastal upwelling on picophytoplankton distribution off the coast of Zhanjiang in South China Sea, Oceanol. Hydrobiol. Stud., 43, 283, 10.2478/s13545-014-0143-x Young, 1999, A preliminary survey of the summer hydrography and plankton biomass of the eastern Great Australian Bight, Australia. Southern Bluefin Tuna Recruitment Monitoring and Tagging Program Zhang, 2008, Comparative study of picoplankton biomass and community structure in different provinces from subarctic to subtropical oceans, Deep Sea Res. Part II: Top. Stud. Oceanogr., 55, 1605, 10.1016/j.dsr2.2008.04.014 Zubkov, 1998, Picoplanktonic community structure on an Atlantic transect from 50°N to 50°S, Deep Sea Res. Part I: Oceanogr. Res. Pap., 45, 1339, 10.1016/S0967-0637(98)00015-6 Zubkov, 2000, Picoplankton community structure on the Atlantic Meridional Transect: a comparison between seasons, Prog. Oceanogr., 45, 369, 10.1016/S0079-6611(00)00008-2