Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil

Bramley, 1991, An analysis of variability in the activity of nitrifiers in a soil under pasture. 1. Spatially dependent variability and optimum sampling strategy, Aust. J. Soil Res., 29, 95, 10.1071/SR9910095

Cambardella, 1994, Field-scale variability of soil properties in Central Iowa soils, Soil Sci. Soc. Am. J., 58, 1501, 10.2136/sssaj1994.03615995005800050033x

Young, 1998, Can there be a contemporary ecological dimension to soil biology without a habitat? Discussion, Soil Biol. Biochem., 30, 1229, 10.1016/S0038-0717(97)00263-0

Ranjard, 2001, Quantitative and qualitative microscale distribution of bacteria in soil, Res. Microbiol., 152, 707, 10.1016/S0923-2508(01)01251-7

Parkin, 1993, Spatial variability of microbial processes in soil - a review, J. Environ. Qual., 22, 409, 10.2134/jeq1993.00472425002200030004x

Robertson, 1997, Soil resources, microbial activity, and primary production across an agricultural ecosystem, Ecol. Appl., 7, 158, 10.1890/1051-0761(1997)007[0158:SRMAAP]2.0.CO;2

Grundmann, 2000, Geostatistical analysis of the distribution of NH4+ and NO2−-oxidizing bacteria and serotypes at the millimeter scale along a soil transect, FEMS Microbiol. Ecol., 34, 57

Nunan, 2002, In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil, Microb. Ecol., 44, 296, 10.1007/s00248-002-2021-0

Grundmann, 2001, Spatial modeling of nitrifier microhabitats in soil, Soil Sci. Soc. Am. J., 65, 1709, 10.2136/sssaj2001.1709

Darrah, 1987, A theoretical consideration of the implications of cell clustering for the prediction of nitrification in soil, Plant Soil, 99, 387, 10.1007/BF02370884

Whitehead, 2001, Quorum-sensing in gram-negative bacteria, FEMS Microbiol. Rev., 25, 365, 10.1111/j.1574-6976.2001.tb00583.x

Pierson, 1994, Phenazine antibiotic biosynthesis in Pseudomonas-Aureofaciens-30-84 is regulated by Phzr in response to cell-density, J. Bacteriol., 176, 3966, 10.1128/jb.176.13.3966-3974.1994

Pierson, 1998, Interpopulation signaling via N-acyl-homoserine lactones among bacteria in the wheat rhizosphere, Mol. Plant Microbe Interact., 11, 1078, 10.1094/MPMI.1998.11.11.1078

Vanveen, 1990, Soil structural aspects of decomposition of organic-matter by microorganisms, Biogeochemistry, 11, 213, 10.1007/BF00004497

Young, 2000, Tillage, habitat space and function of soil microbes, Soil Till. Res., 53, 201, 10.1016/S0167-1987(99)00106-3

Chenu, 2001, Short-term changes in the spatial distribution of microorganisms in soil aggregates as affected by glucose addition, Biol. Fertil. Soils, 34, 349, 10.1007/s003740100419

Ranjard, 2000, A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints, FEMS Microbiol. Ecol., 31, 107, 10.1111/j.1574-6941.2000.tb00676.x

Rappoldt, 1999, The distribution of anoxic volume in a fractal model of soil, Geoderma, 88, 329, 10.1016/S0016-7061(98)00112-8

Nunan, 2001, Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil, FEMS Microbiol. Ecol., 37, 67, 10.1111/j.1574-6941.2001.tb00854.x

Rossi, 1992, Geostatistical tools for modeling and interpreting ecological spatial dependence, Ecol. Mon., 62, 277, 10.2307/2937096

Webster, 1992, Geostatistical analysis of cyst nematodes in soil, J. Soil Sci., 43, 583, 10.1111/j.1365-2389.1992.tb00162.x

Robertson, 1993, The spatial variability of soil resources following long-term disturbance, Oecologia, 96, 451, 10.1007/BF00320501

Parkin, 1987, Soil microsites as a source of denitrification variability, Soil Sci. Soc. Am. J., 51, 1194, 10.2136/sssaj1987.03615995005100050019x

Gaillard, 1999, Carbon, nitrogen and microbial gradients induced by plant residues decomposing in soil, Eur. J. Soil Sci., 50, 567, 10.1046/j.1365-2389.1999.00266.x

Bundt, 2001, Preferential flow paths: biological ‘hot spots’ in soils, Soil Biol. Biochem., 33, 729, 10.1016/S0038-0717(00)00218-2

Franklin, 2001, Impact of dilution on microbial community structure and functional potential: Comparison of numerical simulations and batch culture experiments, Appl. Environ. Microbiol., 67, 702, 10.1128/AEM.67.2.702-712.2001

Strong, 1997, Initial soil pH affects the pH at which nitrification ceases due to self-induced acidification of microbial microsites, Aust. J. Soil Res., 35, 565, 10.1071/S96055

Ou, 1994, Influence of soil organic-matter and soil surfaces on a bacterial consortium that mineralizes Fenamiphos, Soil Sci. Soc. Am. J., 58, 1148, 10.2136/sssaj1994.03615995005800040020x

Foster, 1988, Microenvironments of soil-microorganisms, Biol. Fertil. Soils, 6, 189, 10.1007/BF00260816

Kilbertus, 1980, Study of microhabitats in soil aggregates - Relation to bacterial biomass and size of procaryotes, Rev. Ecol. Biol. Sol, 17, 543

Ranjard, 2000, Heterogeneous cell density and genetic structure of bacterial pools associated with various soil microenvironments as determined by enumeration and DNA fingerprinting approach (RISA), Microb. Ecol., 39, 263

Ronn, 1996, Spatial distribution and successional pattern of microbial activity and micro-faunal populations on decomposing barley roots, J. Appl. Ecol., 33, 662, 10.2307/2404938

Di, 1998, Degradation rates of eight pesticides in surface and subsurface soils under laboratory and field conditions, Soil Sci., 163, 404, 10.1097/00010694-199805000-00008

Chappell, 2002, Surface chemistry and function of microbial biofilms, Adv. Agron., 76, 199