Soil microbial sources of nitrous oxide: recent advances in knowledge, emerging challenges and future direction

Current Opinion in Environmental Sustainability - Tập 3 Số 5 - Trang 321-327 - 2011
Elizabeth M. Baggs1
1Institute of Biological and Environmental Sciences, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, UK

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IPCC: Climate Change 2007: Synthesis Report. Contribution of Working Groups I, II and III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Edited by Pachauri RK, Reisinger A. Geneva, Switzerland: IPCC; 2007.

Baggs, 2010, Microbial terrestrial pathways to N2O, 4

Baggs, 2008, A review of stable isotope techniques for N2O source partitioning in soils: recent progress, remaining challenges and future considerations, Rapid Commun Mass Spectrom, 22, 1664, 10.1002/rcm.3456

Morley, 2008, Production of NO, N2O and N2 by extracted soil bacteria; regulation by NO2− and O2 concentrations, FEMS Microbiol Ecol, 65, 102, 10.1111/j.1574-6941.2008.00495.x

Baggs, 2011, N2O production in the terrestrial environment, 211

Bremner, 1997, Sources of nitrous oxide in soils, Nutr Cycl Agroecosyst, 49, 7, 10.1023/A:1009798022569

Shoun, 1992, Denitrification by fungi, FEMS Microbiol Lett, 73, 277, 10.1111/j.1574-6968.1992.tb05331.x

Risgaard-Petersen, 2006, Evidence for complete denitrification in a benthic foraminifer, Nature, 443, 93, 10.1038/nature05070

Piña-Ochoa, 2010, Widespread occurrence of nitrate storage and denitrification among Foraminifera and Gromiida, Proc Natl Acad Sci U S A, 107, 1148, 10.1073/pnas.0908440107

Zumft, 1997, Cell biology and molecular basis of denitrification, Microbiol Mol Biol Rev, 61, 533, 10.1128/.61.4.533-616.1997

Richardson, 2009, Mitigating release of the potent greenhouse gas N2O from the nitrogen cycle: could enzymic regulation hold the key?, Trends Biotechnol, 27, 388, 10.1016/j.tibtech.2009.03.009

Patureau, 2000, Aerobic denitrifiers isolated from diverse natural and managed ecosystems, Microb Ecol, 39, 45, 10.1007/s002480000009

Takaya, 2000, Nitric oxide reduction, the last step in denitrification by Fusarium oxysporum is obligatorily mediated by cytochrome P450nor, Mol Gen Genet, 263, 342, 10.1007/s004380051177

Blagodatskiy, 2008, Nitrous oxide production in soils and the ratio of the fungal to bacterial biomass, Eurasian Soil Sci, 41, 1448, 10.1134/S1064229308130140

Laughlin, 2002, Evidence for fungal dominance of denitrification and codenitrification in a grassland soil, Soil Sci Soc Am J, 66, 1540, 10.2136/sssaj2002.1540

Takaya, 2009, Response to hypoxia, reduction of electron acceptors, and subsequent survival by filamentous fungi, Biosci Biotechnol Biochem, 73, 1, 10.1271/bbb.80487

Sutka, 2008, Isotopologue fractionation during N2O production by fungal denitrification, Rapid Commun Mass Spectrom, 22, 3989, 10.1002/rcm.3820

Prendergast-Miller, 2011, Nitrous oxide production by the ectomycorrhizal fungi Paxillus involutus and Tylospora fibrillosa, FEMS Microbiol Lett, 316, 31, 10.1111/j.1574-6968.2010.02187.x

Bateman, 2005, Contributions of nitrification and denitrification to N2O emissions from soils at different water-filled pore space, Biol Fertil Soils, 41, 379, 10.1007/s00374-005-0858-3

Su, 2004, Nitrous oxide-forming codenitrification catalyzed by cytochrome P450nor, Biosci Biotechnol Biochem, 68, 473, 10.1271/bbb.68.473

Kool, 2009, Oxygen exchange between nitrogen oxides and H2O can occur during nitrifier pathways, Soil Biol Biochem, 41, 1632, 10.1016/j.soilbio.2009.05.002

Shaw, 2006, Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway, Environ Microbiol, 8, 214, 10.1111/j.1462-2920.2005.00882.x

Wrage, 2001, Role of nitrifier denitrification in the production of nitrous oxide, Soil Biol Biochem, 33, 1723, 10.1016/S0038-0717(01)00096-7

Jetten, 2001, New pathways for ammonia conversion in soil and aquatic systems, Plant Soil, 230, 9, 10.1023/A:1004683807250

Yamaguchi, 2003, Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans A3151, J Biochem, 134, 853, 10.1093/jb/mvg211

Auclair, 2010, Dissimilatory reduction of nitrate in seawater by a Methylophaga strain containing two highly divergent narG sequences, ISME J, 4, 1302, 10.1038/ismej.2010.47

Acton, 2011, Interactions between N application rate, CH4 oxidation and N2O production in soil, Biogeochemistry, 103, 15, 10.1007/s10533-010-9442-5

Schleper, 2010, Ammonia oxidation: different niches for bacteria and archaea?, ISME J, 4, 1092, 10.1038/ismej.2010.111

Kool, 2007, Oxygen exchange between (de)nitrification intermediates and H2O and its implications for source determination of NO3− and N2O: a review, Rapid Commun Mass Spectrom, 21, 3569, 10.1002/rcm.3249

Kool, 2009, The 18O signature of biogenic nitrous oxide is determined by O exchange with water, Rapid Commun Mass Spectrom, 23, 104, 10.1002/rcm.3859

Philippot, 2002, Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils, Appl Environ Microbiol, 68, 6121, 10.1128/AEM.68.12.6121-6128.2002

Stres, 2004, Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils, Appl Environ Microbiol, 70, 301, 10.1128/AEM.70.1.301-309.2004

Junier, 2010, Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment, Appl Microbiol Biotechnol, 85, 425, 10.1007/s00253-009-2228-9

Garbeva, 2007, Phylogeny of nitrite reductase (nirK) and nitric oxide reductase (norB) genes from Nitrosospira species isolated from soil, FEMS Microbiol Lett, 266, 83, 10.1111/j.1574-6968.2006.00517.x

Stein, 1998, Loss of ammonia monoxygenase activity in Nitrosomonas europaea upon exposure to nitrite, Appl Environ Microbiol, 64, 4098, 10.1128/AEM.64.10.4098-4102.1998

Silver, 2001, Dissimilatory nitrate reduction to ammonium in upland tropical forest soils, Ecology, 8, 2410, 10.1890/0012-9658(2001)082[2410:DNRTAI]2.0.CO;2

Silver, 2005, Nitrogen cycling in tropical plantation forests: potential controls on nitrogen retention, Ecol Appl, 15, 1604, 10.1890/04-1322

Yin, 2002, Dissimilatory nitrate reduction to ammonium and responsible microorganisms in two Chinese and Australian paddy soils, Soil Biol Biochem, 34, 1131, 10.1016/S0038-0717(02)00049-4

Huygens, 2007, Soil nitrogen conservation mechanisms in a pristine south Chilean Nothofagus forest ecosystem, Soil Biol Biochem, 39, 2448, 10.1016/j.soilbio.2007.04.013

Templer, 2008, Plant and microbial controls on nitrogen retention and loss in a tropical humid forest, Ecology, 89, 3030, 10.1890/07-1631.1

Rutting, 2010, Ten years of elevated atmospheric carbon dioxide alters soil nitrogen transformations in a sheep-grazed pasture, Global Change Biol, 16, 2530, 10.1111/j.1365-2486.2009.02089.x

Rutting, 2008, Functional role of DNRA and nitrite reduction in a pristine south Chilean Nothofagus forest, Biogeochemistry, 90, 243, 10.1007/s10533-008-9250-3

Wan, 2009, Gross nitrogen transformations and related nitrous oxide emissions in an intensively used calcareous soil, Soil Sci Soc Am J, 73, 102, 10.2136/sssaj2007.0419

Schmidt, 2011, Constraining the conditions conducive to dissimilatory nitrate reduction to ammonium in soil, Soil Biol Biochem, 10.1016/j.soilbio.2011.02.015

Kelso, 1997, Dissimilatory nitrate reduction in anaerobic sediments leading to river nitrite accumulation, Appl Environ Microbiol, 63, 4679, 10.1128/AEM.63.12.4679-4685.1997

Browning, 2005, Integration of three signals at the Escherichia coli nrf promoter: a role for Fis protein in catabolite repression, Mol Microbiol, 57, 496, 10.1111/j.1365-2958.2005.04701.x

Müller, 2004, A N-15 tracing model to analyse N transformations in old grassland soil, Soil Biol Biochem, 36, 619, 10.1016/j.soilbio.2003.12.006

Stange, 2009, An inverse abundance approach to separate soil nitrogen pools and gaseous nitrogen fluxes into fractions related to ammonium, nitrate and soil organic nitrogen, Eur J Soil Sci, 60, 907, 10.1111/j.1365-2389.2009.01188.x

Simon, 2002, Enzymology and bioenergetics of respiratory nitrite ammonification, FEMS Microbiol Rev, 26, 309, 10.1111/j.1574-6976.2002.tb00616.x

Mosier, 1996, Nitrous oxide emissions from agricultural fields: assessment, measurement and mitigation, Plant Soil, 181, 95, 10.1007/BF00011296

Gentile, 2008, Interactive effects from combining fertiliser and organic residue inputs on nitrogen transformations, Soil Biol Biochem, 40, 2375, 10.1016/j.soilbio.2008.05.018

Frimpong, 2010, Do combined applications of crop residues and inorganic fertiliser lower emission of N2O from soil?, Soil Use Manage, 26, 412, 10.1111/j.1475-2743.2010.00293.x

Rao, 1987, Slow-release urea fertilisers—effect on floodwater chemistry, ammonia volatilisation and rice growth in an alkali soil, Fertil Res, 13, 209, 10.1007/BF01066445

Guo, 2009, Crop residue effect on crop performance, soil N2O and CO2 emissions in alley cropping systems in subtropical China, Agroforest Syst, 76, 67, 10.1007/s10457-008-9170-1

Johnson, 2007, Agricultural opportunities to mitigate greenhouse gas emissions, Environ Pollut, 150, 107, 10.1016/j.envpol.2007.06.030

Di, 2010, Nitrous oxide emissions from grazed grassland as affected by a nitrification inhibitor, dicyandiamide, and relationships with ammonia-oxidizing bacteria and archaea, J Soils Sediments, 10, 943, 10.1007/s11368-009-0174-x

Foulkes, 2009, Identifying traits to improve the nitrogen economy of wheat: recent advances and future prospects, Field Crops Res, 114, 329, 10.1016/j.fcr.2009.09.005

Attard, 2011, Soil environmental conditions rather than denitrifier abundance and diversity drive potential denitrification after changes in land uses, Global Change Biol, 17, 1975, 10.1111/j.1365-2486.2010.02340.x

Bhatia, 2010, Mitigating nitrous oxide emission from soil under conventional and no-tillage in wheat using nitrification inhibitors, Agric Ecosyst Environ, 136, 247, 10.1016/j.agee.2010.01.004

Fillery, 2007, Plant-based manipulation of nitrification in soil: a new approach to managing N loss?, Plant Soil, 294, 1, 10.1007/s11104-007-9263-z

Skiba, 2011, Plant influence on nitrification, Biochem Soc Trans, 39, 275, 10.1042/BST0390275

Sohi, 2010, A review of biochar and its use and function in soil, Adv Agron, 105, 47, 10.1016/S0065-2113(10)05002-9

Waki, 2002, Effects of nitrite and ammonium on methane-dependent denitrification, Appl Microbiol Biotechnol, 59, 338, 10.1007/s00253-002-1003-y