Single-nucleus and Spatially Resolved Intratumor Subtype Heterogeneity in Bladder Cancer
Tài liệu tham khảo
Dyrskjøt, 2003, Identifying distinct classes of bladder carcinoma using microarrays, Nat Genet, 33, 90, 10.1038/ng1061
Kamoun, 2020, A consensus molecular classification of muscle-invasive bladder cancer, Eur Urol, 77, 420, 10.1016/j.eururo.2019.09.006
Lindskrog, 2021, An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer, Nat Commun, 12, 2301, 10.1038/s41467-021-22465-w
Thomsen, 2017, Comprehensive multiregional analysis of molecular heterogeneity in bladder cancer, Sci Rep, 7, 11702, 10.1038/s41598-017-11291-0
Sjödahl, 2018, Discordant molecular subtype classification in the basal-squamous subtype of bladder tumors and matched lymph-node metastases, Mod Pathol, 31, 1869, 10.1038/s41379-018-0096-5
Sfakianos, 2020, Epithelial plasticity can generate multi-lineage phenotypes in human and murine bladder cancers, Nat Commun, 11, 2540, 10.1038/s41467-020-16162-3
Lai, 2021, Single-cell RNA sequencing reveals the epithelial cell heterogeneity and invasive subpopulation in human bladder cancer, Int J Cancer, 149, 2099, 10.1002/ijc.33794
Wang, 2021, Single-cell analyses reveal mechanisms of cancer stem cell maintenance and epithelial-mesenchymal transition in recurrent bladder cancer, Clin Cancer Res, 27, 6265, 10.1158/1078-0432.CCR-20-4796
Gouin, 2021, An N-Cadherin 2 expressing epithelial cell subpopulation predicts response to surgery, chemotherapy and immunotherapy in bladder cancer, Nat Commun, 12, 4906, 10.1038/s41467-021-25103-7
Schmøkel, 2023, Improved protocol for single nucleus RNA-sequencing of frozen human bladder tumor biopsies, Nucleus, 14, 2186686, 10.1080/19491034.2023.2186686
Stuart, 2019, Comprehensive integration of single-cell data, Cell, 177, 1888, 10.1016/j.cell.2019.05.031
WISP. Weighted In Silico Pathology: a novel approach to assess intra-tumoral heterogeneity. https://cit-bioinfo.github.io/WISP/.
Bergenstråhle, 2020, Seamless integration of image and molecular analysis for spatial transcriptomics workflows, BMC Genomics, 21, 482, 10.1186/s12864-020-06832-3
Taber, 2020, Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis, Nat Commun, 11, 4858, 10.1038/s41467-020-18640-0
Taber, 2022, Immune contexture and differentiation features predict outcome in bladder cancer, Eur Urol Oncol, 5, 203, 10.1016/j.euo.2022.01.008
Strandgaard, 2022, Elevated T-cell exhaustion and urinary tumor DNA levels are associated with bacillus Calmette-Guérin failure in patients with non-muscle-invasive bladder cancer, Eur Urol, 82, 646, 10.1016/j.eururo.2022.09.008
Van de Sande, 2020, A scalable SCENIC workflow for single-cell gene regulatory network analysis, Nat Protoc, 15, 2247, 10.1038/s41596-020-0336-2
Wu, 2021, A single-cell and spatially resolved atlas of human breast cancers, Nat Genet, 53, 1334, 10.1038/s41588-021-00911-1
Joanito, 2022, Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer, Nat Genet, 54, 963, 10.1038/s41588-022-01100-4