Single-molecule folding

Baldwin, 1994, Protein folding. Matching speed and stability, Nature, 369, 183, 10.1038/369183a0 Onuchic, 1997, Theory of protein folding: the energy landscape perspective, Annu. Rev. Phys. Chem., 48, 545, 10.1146/annurev.physchem.48.1.545 Dill, 1997, From Levinthal to pathways to funnels, Nat. Struct. Biol., 4, 10, 10.1038/nsb0197-10 Thirumalai, 2001, Early events in RNA folding, Annu. Rev. Phys. Chem., 52, 751, 10.1146/annurev.physchem.52.1.751 Stryer, 1967, Energy transfer: a spectroscopic ruler, Proc. Natl. Acad. Sci. U.S.A., 58, 719, 10.1073/pnas.58.2.719 Selvin, 2000, The renaissance of fluorescence resonance energy transfer, Nat. Struct. Biol., 7, 730, 10.1038/78948 Clausen-Schaumann, 2000, Force spectroscopy with single bio-molecules, Curr. Opin. Chem. Biol., 4, 524, 10.1016/S1367-5931(00)00126-5 Xie, 1998, Optical studies of single molecules at room temperature, Annu. Rev. Phys. Chem., 49, 441, 10.1146/annurev.physchem.49.1.441 Nie, 1997, Optical detection of single molecules, Annu. Rev. Biophys. Biomol. Struct., 26, 567, 10.1146/annurev.biophys.26.1.567 Moerner, 1999, Illuminating single molecules in condensed matter, Science, 283, 1670, 10.1126/science.283.5408.1670 Ha, 1996, Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor, Proc. Natl. Acad. Sci. U.S.A., 93, 6264, 10.1073/pnas.93.13.6264 Schutz, 1998, Direct observation of ligand colocalization on individual receptor molecules, Biophys. J., 74, 2223, 10.1016/S0006-3495(98)77931-7 Deniz, 1999, Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations, Proc. Natl. Acad. Sci. U.S.A., 96, 3670, 10.1073/pnas.96.7.3670 Ha, 1999, Ligand-induced conformational changes observed in single RNA molecules, Proc. Natl. Acad. Sci. U.S.A., 96, 9077, 10.1073/pnas.96.16.9077 Brasselet, 2000, Single-molecule fluorescence resonant energy transfer in calcium concentration dependent cameleon, J. Phys. Chem., 104, 3675, 10.1021/jp993954o Sako, 2000, Single-molecule imaging of EGFR signalling on the surface of living cells, Nat. Cell. Biol., 2, 168, 10.1038/35004044 Weiss, 2000, Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy, Nat. Struct. Biol., 7, 724, 10.1038/78941 Ha, 2001, Single-molecule fluorescence methods for the study of nucleic acids, Curr. Opin. Struct. Biol., 11, 287, 10.1016/S0959-440X(00)00204-9 Zhuang, 2000, A single-molecule study of RNA catalysis and folding, Science, 288, 2048, 10.1126/science.288.5473.2048 Russell, 2002, Exploring the folding landscape of a structured RNA, Proc. Natl. Acad. Sci. U.S.A., 99, 155, 10.1073/pnas.221593598 Zhuang, 2002, Correlating structural dynamics and function in single ribozyme molecules, Science, 296, 1473, 10.1126/science.1069013 Jia, 1999, Folding dynamics of single GCN-4 peptide by fluorescence resonance energy transfer confocal microscopy, Chem. Phys., 247, 69, 10.1016/S0301-0104(99)00127-5 Talaga, 2000, Dynamics and folding of single two-stranded coiled-coil peptides studied by fluorescent energy transfer confocal microscopy, Proc. Natl. Acad. Sci. U.S.A., 97, 13021, 10.1073/pnas.97.24.13021 Deniz, 2000, Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2, Proc. Natl. Acad. Sci. U.S.A., 97, 5179, 10.1073/pnas.090104997 Schuler, 2002, Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy, Nature, 419, 743, 10.1038/nature01060 Kellermayer, 1997, Folding-unfolding transitions in single titin molecules characterized with laser tweezers, Science, 276, 1112, 10.1126/science.276.5315.1112 Tskhovrebova, 1997, Elasticity and unfolding of single molecules of the giant muscle protein titin, Nature, 387, 308, 10.1038/387308a0 Rief, 1997, Reversible unfolding of individual titin immunoglobulin domains by AFM, Science, 276, 1109, 10.1126/science.276.5315.1109 Bell, 1978, Models for the specific adhesion of cells to cells, Science, 200, 618, 10.1126/science.347575 Evans, 1997, Dynamic strength of molecular adhesion bonds, Biophys. J., 72, 1541, 10.1016/S0006-3495(97)78802-7 Heymann, 2000, Dynamic force spectroscopy of molecular adhesion bonds, Phys. Rev. Lett., 84, 6126, 10.1103/PhysRevLett.84.6126 Isralewitz, 2001, Steered molecular dynamics and mechanical functions of proteins, Curr. Opin. Struct. Biol., 11, 224, 10.1016/S0959-440X(00)00194-9 Marszalek, 1999, Mechanical unfolding intermediates in titin modules, Nature, 402, 100, 10.1038/47083 Li, 2000, Point mutations alter the mechanical stability of immunoglobulin modules, Nat. Struct. Biol., 7, 1117, 10.1038/81964 Carrion-Vazquez, 1999, Mechanical and chemical unfolding of a single protein: a comparison, Proc. Natl. Acad. Sci. U.S.A., 96, 3694, 10.1073/pnas.96.7.3694 Li, 2000, Atomic force microscopy reveals the mechanical design of a modular protein, Proc. Natl. Acad. Sci. U.S.A., 97, 6527, 10.1073/pnas.120048697 Brockwell, 2002, The effect of core destabilization on the mechanical resistance of i27, Biophys. J., 83, 458, 10.1016/S0006-3495(02)75182-5 Fowler, 2001, Mapping the folding pathway of an immunoglobulin domain: structural detail from Phi value analysis and movement of the transition state, Structure, 9, 355, 10.1016/S0969-2126(01)00596-2 Fowler, 2002, Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering, J. Mol. Biol., 322, 841, 10.1016/S0022-2836(02)00805-7 Best, 2002, A simple method for probing the mechanical unfolding pathway of proteins in detail, Proc. Natl. Acad. Sci. U.S.A., 99, 12143, 10.1073/pnas.192351899 Li, 2002, Reverse engineering of the giant muscle protein titin, Nature, 418, 998, 10.1038/nature00938 Rief, 1998, Elastically coupled two-level-systems as a model for biopolymer extensibility, Phys. Rev. Lett., 81, 4764, 10.1103/PhysRevLett.81.4764 Oberhauser, 1998, The molecular elasticity of the extracellular matrix protein tenascin, Nature, 393, 181, 10.1038/30270 Oberdorfer, 2000, Conformational analysis of native fibronectin by means of force spectroscopy, Langmuir, 16, 9955, 10.1021/la0008176 Oberhauser, 2002, The mechanical hierarchies of fibronectin observed with single-molecule AFM, J. Mol. Biol., 319, 433, 10.1016/S0022-2836(02)00306-6 Rief, 1999, Single molecule force spectroscopy of spectrin repeats: low unfolding forces in helix bundles, J. Mol. Biol., 286, 553, 10.1006/jmbi.1998.2466 Lenne, 2000, States and transitions during forced unfolding of a single spectrin repeat, FEBS Lett., 476, 124, 10.1016/S0014-5793(00)01704-X Altmann, 2002, Pathways and intermediates in forced unfolding of spectrin repeats, Structure, 10, 1085, 10.1016/S0969-2126(02)00808-0 Yang, 2000, Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme, Proc. Natl. Acad. Sci. U.S.A., 97, 139, 10.1073/pnas.97.1.139 Best, 2001, Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation, Biophys. J., 81, 2344, 10.1016/S0006-3495(01)75881-X Oesterhelt, 2000, Unfolding pathways of individual bacteriorhodopsins, Science, 288, 143, 10.1126/science.288.5463.143 Müller, 2002, Stability of bacteriorhodopsin alpha-helices and loops analyzed by single-molecule force spectroscopy, Biophys. J., 83, 3578, 10.1016/S0006-3495(02)75358-7 Liphardt, 2001, Reversible unfolding of single RNA molecules by mechanical force, Science, 292, 733, 10.1126/science.1058498 Liphardt, 2002, Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski’s equality, Science, 296, 1832, 10.1126/science.1071152 Smith, 1999, Molecular mechanistic origin of the toughness of natural adhesives fibres and composites, Nature, 399, 761, 10.1038/21607 Thompson, 2001, Bone indentation recovery time correlates with bond reforming time, Nature, 414, 773, 10.1038/414773a Schwaiger, 2002, The myosin coiled-coil is a truly elastic protein structure, Nat. Materials, 1, 232, 10.1038/nmat776