Simultaneous analysis of a sequence of paired ecological tables: A comparison of several methods

Escoufier, Y. (1973). Le traitement des variables vectorielles. <i>Biometrics</i> <b>29</b> 751–760.

R Development Core Team (2009). <i>R: A Language and Environment for Statistical Computing</i>. R Foundation for Statistical Computing, Vienna, Austria. Available at <a href="http://www.r-project.org">http://www.r-project.org</a>. ISBN 3-900051-07-0.

Dray, S. and Dufour, A. B. (2007). The ade4 package: Implementing the duality diagram for ecologists. <i>J. Statist. Soft.</i> <b>22</b> 1–20.

ter Braak, C. J. F. (1986). Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis. <i>Ecology</i> <b>67</b> 1167–1179.

Chessel, D., Dufour, A. B. and Thioulouse, J. (2004). The ade4 package—i: One-table methods. <i>R News</i> <b>4</b> 5–10.

Chessel, D. and Hanafi, M. (1996). Analyse de la co-inertie de K nuages de points. <i>Rev. Statist. Appl.</i> <b>44</b> 35–60.

Culhane, A. C., Perriere, G., Considine, E. C., Cotter, T. G. and Higgins, D. G. (2002). Between-group analysis of microarray data. <i>Bioinformatics</i> <b>18</b> 1600–1608.

Dolédec, S. and Chessel, D. (1987). Rythmes saisonniers et composantes stationnelles en milieu aquatique. I. Description d’un plan d’observations complet par projection de variables. <i>Acta Oecologica, Oecologia Generalis</i> <b>8</b> 403–426.

Dolédec, S. and Chessel, D. (1994). Co-inertia analysis: An alternative method for studying species–environment relationships. <i>Freshwater Biology</i> <b>31</b> 277–294.

Dray, S., Chessel, D. and Thioulouse, J. (2003). Co-inertia analysis and the linking of ecological tables. <i>Ecology</i> <b>84</b> 3078–3089.

Dray, S., Dufour, A. B. and Chessel, D. (2007). The ade4 package—ii: Two-table and <i>k</i>-table methods. <i>R News</i> <b>7</b> 47–52.

Escofier, B. and Pagés, J. (1994). Multiple factor analysis (AFMULT package). <i>Comput. Statist. Data Anal.</i> <b>18</b> 121–140.

Franquet, E. and Chessel, D. (1994). Approche statistique des composantes spatiales et temporelles de la relation faune-milieu. <i>C. R. Acad. Sci.</i> <b>317</b> 202–206.

Franquet, E., Dolédec, S. and Chessel, D. (1995). Using multivariate analyses for separating spatial and temporal effects within species–environment relationships. <i>Hydrobiologia</i> <b>300</b> 425–431.

Guisan, A. and Zimmermann, N. (2000). Predictive habitat distribution models in ecology. <i>Ecological Modelling</i> <b>135</b> 147–186.

Hill, M. O. (1973). Reciprocal averaging: An eigenvector method of ordination. <i>J. Ecol.</i> <b>61</b> 237–249.

Lavit, C., Escoufier, Y., Sabatier, R. and Traissac, P. (1994). The ACT (STATIS method). <i>Comput. Statist. Data Anal.</i> <b>18</b> 97–119.

Rao, C. (1964). The use and interpretation of principal component analysis in applied research. <i>Sankhyā A</i> <b>26</b> 329–358.

Simier, M., Blanc, L., Pellegrin, F. and Nandris, D. (1999). Approche simultanee de <i>k</i> couples de tableaux: Application à l’étude des relations pathologie végétale—environnement. <i>Rev. Statist. Appl.</i> <b>47</b> 31–46.

Stanimirova, I., Walczaka, B., Massart, D. L., Simeonov, V., Saby, C. A. and Di Crescenzo, E. (2004). STATIS, a three-way method for data analysis. Application to environmental data. <i>Chemometrics and Intelligent Laboratory Systems</i> <b>73</b> 219–233.

Tenenhaus, M. and Young, F. (1985). An analysis and synthesis of multiple correspondence analysis, optimal scaling, dual scaling, homogeneity analysis and other methods for quantifying categorical multivariate data. <i>Psychometrika</i> <b>50</b> 91–119.

Thioulouse, J. and Chessel, D. (1987). Les analyses multitableaux en ecologie factorielle. i: De la typologie d’etat à la typologie de fonctionnement par l’analyse triadique. <i>Acta Oecologica, Oecologia Generalis</i> <b>8</b> 463–480.

Thioulouse, J. and Dray, S. (2007). Interactive multivariate data analysis in R with the ade4 and ade4TkGUI packages. <i>J. Statist. Soft.</i> <b>22</b> 1–14.

Thioulouse, J., Simier, M. and Chessel, D. (2004). Simultaneous analysis of a sequence of paired ecological tables. <i>Ecology</i> <b>85</b> 272–283.

Benzécri, J. P. and Coll (1973). <i>L’analyse des données. II L’analyse des correspondances</i>. Bordas, Paris.

Cailliez, F. and Pagès, J. P. (1976). <i>Introduction à l’analyse des données</i>. SMASH, Paris.

Escoufier, Y. (1987). The duality diagramm: A means for better practical applications. In <i>Development in Numerical Ecology</i> (P. Legendre and L. Legendre, eds.). <i>NATO Advanced Institute, Serie G</i> 139–156. Springer, Berlin.

Holmes, S. (2006). Multivariate analysis: The french way. In <i>Festschrift for David Freedman</i> (D. Nolan and T. Speed, eds.) 1–14. IMS, Beachwood, OH.

Lebart, L., Morineau, A. and Warwick, K. M. (1984). <i>Multivariate Descriptive Statistical Analysis</i>. Wiley, New York.

Legendre, P. and Legendre, L. (1998). <i>Numerical Ecology</i>, 2nd English edition. Elsevier, Amsterdam.

Venables, W. N. and Ripley, B. D. (2002). <i>Modern Applied Statistics with S</i>. Springer, New York.