Simplification and replacement of diatom functional traits from a subtropical floodplain lakes paleolimnological records

Agostinho AA, Thomaz SM, Minte Vera CV, Winemiller KO (2000) Biodiversity in the high Paraná River floodplain. In: Gopal B, Junk WJ, Davis JA (eds) Biodiversity in wetlands: assessment, function and conservation. The Netherlands Backhuys Publishers, Leiden, pp 89–118 Agostinho AA, Thomaz SM, Gomes LC (2004) Threats for biodiversity in the floodplain of the Upper Paraná River: effects of hydrological regulation by dams. Ecohydrol Hydrobiol 4:267–280 Algarte VM, Dunck B, Leandrini JA, Rodrigues L (2016) Periphytic diatom ecological guilds in floodplain: Ten years after dam. Ecol Indic 69:407–414 Alves GM, Velho LFM, Lansac-Tôha FA, Robertson B, Bonecker CC (2005) Effect of the connectivity on the diversity and abundance of cladoceran assemblages in lagoons of the upper Paraná river floodplain. Acta Limnol Bras 17:317–327 Anderson MJ, Crist TO, Chase JM, Vellend M, Inouye BD, Freestone AL, Sanders NJ, Cornell HV, Comita LS, Davies KF, Harrison SP, Kraft NJB, Stegen JC, Swenson NG (2011) Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist. Ecol Lett 14:19–28 Arantes CC, Fitzgerald BF, Hoeinghaus DJ, Winemiller KO (2019) Impacts of hydroelectric dams on fishes and fisheries in tropical rivers through the lens of functional traits. Curr Opin Environ Sustain 37:28–40 Barwell LJ, Isaac NJB, Kunin WE (2015) Measuring b-diversity with species abundance data. J Anim Ecol 84:1112–1122 Battarbee RW (1986) Diatom analysis. In: Berglund BE (ed) Handbook of holocene paleoecology and paleohydrology. Wiley, London, pp 527–570 Battarbee RW, Jones VJ, Flower RJ, Cameron NG, Bennion H (2001) Diatoms. In: Smol JP, Birks HJB, Last WM (eds) Tracking environmental change using lake sediments terrestrial, algal, and siliceous indicators. Kluwer Academic Publishers, The Netherlands, pp 155–202 Beghelli FGS, dos Santos ACA, Urso-Guimarães MV, Calijuri MC (2014) Spatial and temporal heterogeneity in a subtropical reservoir and their effects over the benthic macroinvertebrate community. Acta Limnol Bras 26:306–317 Berthon V, Bouchez A, Rimet F (2011) Use of diatom life-forms and ecological guilds to assess pollution in rivers: case study of south-eastern French rivers. Hydrobiologia 673:259–271 Botta-Dukát Z (2005) Rao’s quadratic entropy as a measure of functional diversity based on multiple traits. J Veg Sci 16:533–540 Bozelli RL, Thomaz SM, Padial AA, Lopes PM, Bini LM (2015) Floods decrease zooplankton beta diversity and environmental heterogeneity in an Amazonian floodplain system. Hydrobiologia 753:233–241 Braghin LSM, Figueiredo BRS, Meurer T, Michelan TS, Simões NR, Bonecker CC (2015) Zooplankton diversity in a dammed river basin is maintained by preserved tributaries in a tropical floodplain. Aquat Ecol 49:175–187 Burliga AL, Schwarzbold A (2013) Periphyton: taxonomic and morphological diversity. In: Schwarzbold AA, Burliga A, Torgan LC (eds) Ecology of periphyton. Rima, São Carlos, pp 1–6 (in Portuguese) Cardoso P, Rigas F, Carvalho JC, Fortelius M, Borges PAV, Podani J, Schmera D (2014) Partitioning taxon, phylogenetic and functional beta diversity into replacement and richness difference components. J Biogeogr 41:749–761 Cardoso P, Rigal F, Carvalho JC (2015) BAT—biodiversity assessment tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity. Methods Ecol Evol 6:232–236 Carvalho JC, Cardoso P, Gomes P (2012) Determining the relative roles of species replacement and species richness differences in generating beta-diversity patterns. Glob Ecol Biogeogr 21:760–771 Carvalho EM, Pereira NS, Ansilago M, Guimarães FJ (2019) Partial study of the management plan of the Várzeas do Rio Ivinhema State Park as a subsidy for strategic actions. Braz J Dev 5:14740–14760 (in Portuguese) Chase JM (2007) Drought mediates the importance of stochastic community assembly. PNAS 104:17430–17434 Clarkson BR, Ausseil AE, Gerbeaux P (2013) Wetland ecosystem services. In: Dymond JR (ed) Ecosystem services in New Zealand—conditions and trends. Manaaki Whenua Press, Lincoln, p 540 Comte L, Cucherousset J, Boulêtreau S, Olden JD (2016) Resource partitioning and functional diversity of worldwide freshwater fish communities. Ecosphere 7:e01356 Cornwell WK, Schwilk DW, Ackerly DD (2006) A trait-based test for habitat fi ltering: convex hull volume. Ecol 87:1465–1471 Davidson NC (2014) How much wetland has the world lost? Long-term and recent trends in global wetland area. Mar Freshw Res 65:934–941 Devictor V, Julliard R, Clavel J, Jiguet F, Lee A, Couvet D (2008) Functional biotic homogenization of bird communities in disturbed landscapes. Glob Ecol Biogeogr 17:252–261 Dı́az S, Cabido M (2001) Vive la différence: plant functional diversity matters to ecosystem processes. Trends Ecol Evol 16:646–655 Dornelas M, Magurran AE, Buckland ST, Chao A, Chazdon RL, Colwell RK, Curtis T, Gaston KJ, Gotelli NJ, Kosnik MA, McGill B, McCune LJ, Morlon H, Mumby PJ, Øvreås L, Studeny A, Vellend M (2013) Quantifying temporal change in biodiversity: challenges and opportunities. Proc R Soc Biol Sci 280:20121931 Duflot R, Geoger R, Ernoult A, Aviron S, Burel F (2014) Landscape heterogeneity as an ecological filter of species traits. Acta Oecol 56:19–26 Dunck BO, Schneck F, Rodrigues L (2016) Patterns in species and functional dissimilarity: insights from periphytic algae in subtropical floodplain lakes. Hydrobiologia 763:237–247 Flower RJ (1993) Diatom preservation: experiments and observations on dissolution and breakage in modern and fossil material. Hydrobiologia 269(270):473–484 Froyd CA, Willis KJ (2008) Emerging issues in biodiversity and conservation management: the need for a palaeoecological perspective. Quaternary Sci Rev 27:1723–1732 Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biom 53:325–338 Gregory-Eaves I, Beisner BE (2011) Palaeolimnological insights for biodiversity science: an emerging field. Freshw Biol 56:2653–2661 Herschy RW (2012) Lake Sediments. In: Bengtsson L, Herschy RW, Fairbridge RW (eds) Encyclopedia of lakes and reservoirs. encyclopedia of earth sciences series. Springer, Dordrecht, p 953 Kingsford RT (2000) Ecological impacts of dams, water diversions and river management on floodplain wetlands in Australia. Austral Ecol 25:109–127 Laliberté E, Legendre P, Shipley B (2014) FD: Measuring Functional Diversity from Multiple Traits, and other Tools for Functional Ecology. R Package Version 1.0–12. https://mran.microsoft.com/snapshot/2014-11-17/web/packages/FD/FD.pdf Laureto LMO, Cianciaruso MV, Samiac DSM (2015) Functional diversity: an overview of its history and applicability. Nat Conserv 13:112–116 Legendre P (2014) Interpreting the replacement and richness difference components of beta diversity. Glob Ecol Biogeogr 23:1324–1334 Leira M, Filippi ML, Cantonati M (2015) Diatom community response to extreme water-level fluctuations in two Alpine lakes: a core case study. J Paleolimnol 53:289–307 López-Delgado EO, Winemiller KO, Villa-Navarro FA (2020) Local environmental factors influence beta-diversity patterns of tropical fish assemblages more than spatial factors. Ecol 101:e02940 Melo AS, Rangel TFLVB, Diniz-Filho JAF (2009) Environmental drivers of beta-diversity patterns in New-World birds and mammals. Ecogr 32:226–236 Mouchet MA, Villéger S, Mason NWH, Mouillot D (2010) Functional diversity measures: an overview of their redundancy and their ability to discriminate community assembly rules. Funct Ecol 24:867–876 Nevalainen L, Luoto TP, Manca M, Weisse T (2015) A paleolimnological perspective on aquatic biodiversity in Austrian mountain lakes. Aquat Sci 77:59–69 Nock CA, Vogt RJ, Beisner BE (2016) Functional Traits. In: John Wiley Sons Ltd (ed) eLS. Wiley, Chichester Oliveira AG, Baumgartner MT, Gomes LC, Dias RM, Agostinho AA (2018) Long-term effects of flow regulation by dams simplify fish functional diversity. Freshw Biol 63:293–305 Passy SI (2007) Diatom ecological guilds display distinct and predictable behaviour along nutrient and disturbance gradients in running waters. Aquat Bot 86:171–178 Pavoine S, Ollier S, Pontier D (2005) Measuring diversity from dissimilarities with Rao’s quadratic entropy: are any dissimilarity indices suitable? Theor Popul Biol 67:231–239 Pavoine S, Vallet J, Dufour A-B, Gachet S, Daniel H (2009) On the challenge of treating various types of variables: application for improving the measurement of functional diversity. Oikos 118:391–402 Peláez OE, Azevedo FM, Pavanelli CS (2017) Environmental heterogeneity explains species turnover but not nestedness in fish assemblages of a Neotropical basin. Acta Limnol Bras 29:e117 Petchey OL (2003) Integrating methods that investigate how complementarity influences ecosystem functioning. Oikos 101:323–330 Petchey OL, Gaston KJ (2002) Functional diversity (FD), species richness and community composition. Ecol Lett 5:402–411 Petchey OL, Gaston KJ (2006) Functional diversity: back to basics and looking forward. Ecol Lett 9:741–758 Pla-Rabés S, Catalan J (2018) Diatom species variation between lake habitats: implications for interpretation of paleolimnological records. J Paleol 60:169–187 Pound KL, Lawrence GB, Passy SI (2019) Beta diversity response to stress severity and heterogeneity in sensitive versus tolerant stream diatoms. Divers Distrib 25:374–384 R Development Core Team (2013) R A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Retrieved from http://www.R-project.org/ Rimet F, Bouchez A (2011) Use of diatom life-forms and ecological guilds to assess pesticide contamination in rivers: lotic mesocosm approaches. Ecol Indic 11:489–499 Roberto MC, Santana NF, Thomaz SM (2009) Limnology in the Upper Paraná river floodplain: large-scale spatial and temporal patterns, and the influence of reservoirs. Braz J Biol 69:717–725 Rodrigues LC, Simões NR, Bovo-Scomparin VM, Jati S, Santana NF, Roberto MC, Train S (2015) Phytoplankton alpha diversity as an indicator of environmental changes in a neotropical floodplain. Ecol Indic 48:334–341 Ruwer DT, Bernardes MC, Rodrigues L (2018) Diatom responses to environmental changes in the Upper Paraná River floodplain (Brazil) during the last ~ 1000 years. J Paleol 60:543–551 Schmera D, Podani J (2011) Comments on separating components of beta diversity. Community Ecol 12:153–160 Serieyssol CA, Edlund MB, Kallemeyn LW (2009) Impacts of settlement, damming, and hydromanagement in two boreal lakes: a comparative paleolimnological study. J Paleol 42:497–513 Smol JP, Cumming BF (2000) Tracking long-term changes in climate using algal indicators in lake sediments. J Phycol 36:986–1011 Smol JP, Birks HJB, Last WM (2001) Tracking environmental change using lake sediments. Kluwer Academic Publishers, The Netherlands Soares CEA, Velho LFM, Lansac-Tôhaa FA, Bonecker CC, Landeiro VL, Bini LM (2015) The likely effects of river impoundment on beta-diversity of a floodplain zooplankton metacommunity. Nat Conserv 13:74–79 Sobral FL, Cianciaruso MV (2012) Phylogenetic and functional assembly structure: (re)assembling the community ecology on different spatial scales. Biosci J 28:617–631 Soininen J, McDonald R, Hillebrand H (2007) The distance decay of similarity in ecological communities. Ecography 30:3–12 Souza Filho EE (2009) Evaluation of the Upper Paraná River discharge controled by reservoirs. Braz J Biol 69:707–716 Souza Filho EE, Stevaux JC (1997) Geology and geomorphology of the Baía River complex, Curutuba, Ivinhema. In: Vazzoler AEAM, Agostinho AA, Hahn NS (eds) The upper Paraná River floodplain: physical, biological and socioeconomic aspects. EDUEM, Maringá, pp 3–46 (in Portuguese) Stark J, Lehman R, Crawford L, Enquist BJ, Blonder B (2017) Does environmental heterogeneity drive functional trait variation? A test in montane and alpine meadows. Oikos 126:1650–1659 Stein A, Gerstner K, Kreft H (2014) Environmental heterogeneity as a universal driver of species richness across taxa, biomes and spatial scales. Ecol Lett 17:866–880 Stenger-Kovács C, Lengyel E, Crossetti LO, Üveges V, Padisák J (2013) Diatom ecological guilds as indicators of temporally changing stressors and disturbances in the small Torna-stream, Hungary. Ecol Indic 24:138–147 Stenger-Kovács C, Lengyel E, Buczkó K, Padisák J, Korponai J (2020) Trait-based diatom functional diversity as an appropriate tool for understanding the effects of environmental changes in soda pans. Ecol Evol 10:320–335 Stoermer EF, Smol JP (1999) The diatoms: application for the environmental and earth sciences. Cambridge University Press, Cambridge Teodoru C, Dimopoulos A, Wehrli B (2006) Biogenic silica accumulation in the sediments of Iron Gate I Reservoir on the Danube River. Aquat Sci 68:469–481 Thomaz SM, Bini LM, Bozelli RL (2007) Floods increase similarity among aquatic habitats in river-floodplain systems. Hydrobiologia 579:1–13 Thompson PL, Davies TJ, Gonzalez A (2015) Ecosystem functions across trophic levels are linked to functional and phylogenetic diversity. PLoS ONE 10:e0117595 Tilman D (2001) Functional Diversity. Encycl Biodivers 3:109–120 Tilman D, Knops J, Wedin D, Reich P, Ritchie M, Siemann E (1997) The influence of functional diversity and composition on ecosystem processes. Sci 277:1300–1302 Tornés E, Acuña V, Dahm CN, Sabater S (2015) Flood disturbance effects on benthic diatom assemblage structure in a semiarid river network. J Phycol 51:133–143 Villeger S, Miranda JR, Hernandez DF, Mouillot D (2010) Contrasting changes in taxonomic vs. functional diversity of tropical fish communities after habitat degradation. Ecol Appl 20:1512–1522 Villeger S, Novack-Gottshall PM, Mouillot D (2011) The multidimensionality of the niche reveals functional diversity changes in benthic marine biotas across geological time. Ecol Lett 14:561–568 Villeger S, Miranda JR, Hernandez DF, Mouillot D (2012) Low Functional b-Diversity despite High Taxonomic b Diversity among Tropical Estuarine Fish Communities. PLoS ONE 7:e40679 Villeger S, Grenouillet G, Brosse S (2013) Decomposing functional b-diversity reveals that low functional b-diversity is driven by low functional turnover in European fish assemblages. Glob Ecol Biogeogr 22:671–681 Violle C, Navas ML, Vile D, Kazakou E, Fortunel C, Hummel I, Garnier E (2007) Let the concept of trait be functional! Oikos 116:882–892 Ward JV, Tockner K, Schiemer F (1999) Biodiversity of floodplain river ecosystems: ecotones and connectivity. River Res Appl 15:125–139 Whitmore TJ, Riedinger-Whitmore MA (2014) Topical advances and recent studies in paleolimnological research. J Limnol 73:149–160