Simple and quick methods for nematode DNA preparation

Applied Entomology and Zoology - Tập 47 Số 3 - Trang 291-294 - 2012
Ryusei Tanaka1, Taisei Kikuchi1, Takuya Aikawa2, Natsumi Kanzaki1
1Forest Pathology Laboratory, Forestry and Forest Products Research Institute (FFPRI), Tsukuba, Japan
2Tohoku Research Center, FFPRI, Morioka, Japan

Tóm tắt

Từ khóa


Tài liệu tham khảo

Bird AF, Bird J (1991) The structure of nematodes. Phytopathology. Academic Press, New York

Blaxter ML, De Ley P, Garey JR, Liu LX, Scheldeman P, Vierstraete A, Vanfleteren JR, Mackey LY, Dorris M, Frisse LM, Vida JT, Thomas WK (1998) A molecular evolutionary framework for the phylum Nematoda. Nature 392:71–75

De Ley P, Blaxter ML (2002) Systematic position and phylogeny. In: Lee DL (ed) The biology of nematodes. Taylor and Francis, London

Floyd R, Abebe E, Papert A, Blaxter M (2002) Molecular barcodes for soil nematode identification. Mol Ecol 11:839–850

Iwahori H, Kanzaki N, Futai K (2000) A simple, polymerase chain reaction-restriction fragment length polymorphism-aided diagnosis method for pine wilt disease. For Pathol 30:157–164

Kanzaki N, Futai K (2002) A PCR primer set for determination of phylogenetic relationships of Bursaphelenchus species within the xylophilus group. Nematology 4:35–41

Kanzaki N, Maehara N, Aikawa T, Togashi K (2008) First report of parthenogenesis in the genus Bursaphelenchus Fuchs, 1937: a description of Bursaphelenchus okinawaensis sp. nov. isolated from Monochamus maruokai (Coleoptera: Cerambycidae). Zool Sci 8:861–873

Kikuchi T, Aikawa T, Oeda Y, Karim N, Kanzaki N (2009) A rapid and precise diagnostic method for detecting the pinewood nematode Bursaphelenchus xylophilus by loop-mediated isothermal amplification. Phytopathology 99:1365–1369

Porazinska DL, Giblin-Davis RM, Farmerie W, Powers TO, Kanzaki N, Faller L, Morris K, Sung W, Thomas WK (2009) Evaluating high throughput sequencing as a method for metagenomic analysis of nematode diversity. Mol Ecol Resour 9:1439–1450

Porazinska DL, Giblin-Davis RM, Esquivel A, Powers TO, Sung W, Thomas WK (2010) Ecometagenetics confirm high tropical rainforest nematode diversity. Mol Ecol 19:5521–5530

Sommer RJ, Carta LK, Kim S-Y, Sternberg PW (1996) Morphological, genetic and molecular description of Pristionchus pacificus sp. n. (Nematoda, Diplogastridae). Fundam Appl Nematol 19:511–521

Williams BD, Schrank B, Huynh C, Shownkeen R, Waterston RH (1992) A genetic mapping system in Caenorhabditis elegans based on polymorphic sequence-tagged sites. Genetics 131:609–624

Ye W, Giblin-Davis RM, Braasch H, Morris K, Thomas WK (2007) Phylogenetic relationships among Bursaphelenchus species (Nematoda: Parasitaphelenchidae) inferred from nuclear ribosomal and mitochondrial DNA sequence data. Mol Phylogenet Evol 3:1185–1197

Yoder M, De Ley I, King IW, Mundo-Ocampo M, Mann J, Blaxter M, Larisa P, De Ley P (2006) DESS: a versatile solution for preserving morphology and extractable DNA of nematodes. Nematology 8:367–376

Zeng Y, Giblin-Davis RM, Ye W (2007) Two new species of Schistonchus (Nematoda: Aphelenchoididae) associated with Ficus hispida in China. Nematology 9:169–187