Similarity of phylogenetic trees as indicator of protein–protein interaction

Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) J. Mol. Biol., 215, 403–410.

Dandekar,T., Snel,B., Huynen,M. and Bork,P. (1998) Trends Biochem. Sci., 23, 324–328.

Enright,A.J., Iliopoulos,I., Kyrpides,N.C. and Ouzounis,C.A. (1999) Nature, 402, 86–90.

Fryxell,K.J. (1996) Trends Genet., 12, 364–369.

Gaasterland,T. and Ragan,M.A. (1998) Microb. Comp. Genomics, 3, 199–217.

Goh,C.S., Bogan,A.A., Joachimiak,M., Walther,D. and Cohen,F.E. (2000) J. Mol. Biol., 299, 283–293.

Higgins,D.G., Bleasby,A.J. and Fuchs,R. (1992) Comput. Appl. Biosci., 8, 189–191.

Huynen,M., Snel,B., Lathe,W. and Bork,P. (2000) Genome Res., 10, 1204–1210.

Ito,T., Tashiro,K., Muta,S., Ozawa,R., Chiba,T., Nishizawa,M., Yamamoto,K., Kuhara,S. and Sakaki,Y. (2000) Proc. Natl Acad. Sci. USA, 97, 1143–1147.

Marcotte,E.M., Pellegrini,M., Ho-Leung,N., Rice,D.W., Yeates,T.O. and Eisenberg,D. (1999) Science, 285, 751–753.

Marcotte,E.M., Pellegrini,M., Thompson,M.J., Yeates,T.O. and Eisenberg,D. (1999) Nature, 402, 83–86.

McLachlan,A.D. (1971) J. Mol. Biol., 61, 409–424.

Mendelsohn,A.R. and Brent,R. (1999) Science, 284, 1948–1950.

Pages,S., Belaich,A., Belaich,J.P., Morag,E., Lamed,R., Shohan,Y. and Bayer,E.A. (1997) Proteins, 29, 517–527.

Pazos,F., Helmer-Citterich,M., Ausiello,G. and Valencia,A. (1997) J. Mol. Biol., 271, 511–523.

Pellegrini,M., Marcotte,E.M., Thompson,M.J., Eisenberg,D. and Yeates,T.O. (1999) Proc. Natl Acad. Sci. USA, 96, 4285–4288.

Press,W.H., Teukolsky,S.A., Vetterling,W.T. and Flannery,B.P. (1992) Numerical Recipes in C: the Art of Scientific Computing. 2nd edn. Cambridge University Press, Cambridge.

Rain,J.C. et al. (2001) Nature, 409, 211–215.

Sander,C. and Schneider,R. (1993) Nucleic Acids Res., 21, 3105–3109.

Uetz,P. et al. (2000) Nature, 403, 623–631.

Wootton,J.C. and Federhen,S. (1996) Methods Enzymol., 266, 554–571.

Zuckerkandl,E. (1987) J. Mol. Evol., 26, 34–46.