Silk fibroin as an additive for cell-free protein synthesis

Synthetic and Systems Biotechnology - Tập 5 - Trang 145-154 - 2020
Marilyn S. Lee1, Chia-Suei Hung2, Daniel A. Phillips3, Chelsea C. Buck2,3, Maneesh K. Gupta2, Matthew W. Lux1
1US Army Combat Capabilities Development Command Chemical and Biological Center, 8567 Ricketts Point Road, Aberdeen Proving Ground, MD, 21010, USA
2US Air Force Research Laboratory, 2179 12th St., B652/R122 Wright-Patterson Air Force Base, OH, 45433, USA
3US Naval Research Laboratory Center for Bio/Molecular Science and Engineering, Bldg. 42, Room 303 4555 Overlook Ave. Washington, DC 20375, UES Inc., 4401 Dayton Xenia Rd., Beavercreek, OH 45432, USA

Tài liệu tham khảo

Silverman, 2020, Cell-free gene expression: an expanded repertoire of applications, Nat Rev Genet, 21, 151, 10.1038/s41576-019-0186-3 Karim, 2016, A cell-free framework for rapid biosynthetic pathway prototyping and enzyme discovery, Metab Eng, 36, 116, 10.1016/j.ymben.2016.03.002 Sun, 2014, Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system, ACS Synth Biol, 3, 387, 10.1021/sb400131a Jin, 2018, Rapid production and characterization of antimicrobial colicins using Escherichia coli-based cell-free protein synthesis, Synth Biol, 3, 10.1093/synbio/ysy004 Karig, 2017, Preservation of protein expression systems at elevated temperatures for portable therapeutic production, J R Soc Interface, 14, 20161039, 10.1098/rsif.2016.1039 Pardee, 2014, Paper-based synthetic gene networks, Cell, 159, 940, 10.1016/j.cell.2014.10.004 Pardee, 2016, Rapid, low-cost detection of zika virus using programmable biomolecular components, Cell, 165, 1255, 10.1016/j.cell.2016.04.059 Pardee, 2016, Portable, on-demand biomolecular manufacturing, Cell, 167, 248, 10.1016/j.cell.2016.09.013 Duyen, 2017, Paper-based colorimetric biosensor for antibiotics inhibiting bacterial protein synthesis, J Biosci Bioeng, 123, 96, 10.1016/j.jbiosc.2016.07.015 Takahashi, 2018, A low-cost paper-based synthetic biology platform for analyzing gut microbiota and host biomarkers, Nat Commun, 9, 10.1038/s41467-018-05864-4 Meyer, 2019, Organism engineering for the bioproduction of the triaminotrinitrobenzene (TATB) precursor phloroglucinol (PG), ACS Synth Biol, 8, 2746, 10.1021/acssynbio.9b00393 Gräwe, 2019, A paper-based, cell-free biosensor system for the detection of heavy metals and date rape drugs, PloS One, 14, 10.1371/journal.pone.0210940 Salehi, 2016, Cell-free protein synthesis of a cytotoxic cancer therapeutic: onconase production and a just-add-water cell-free system, Biotechnol J, 11, 274, 10.1002/biot.201500237 Adiga, 2018, Point-of-care production of therapeutic proteins of good-manufacturing-practice quality, Nat Biomed Eng, 2, 675, 10.1038/s41551-018-0259-1 Wilding, 2019, Thermostable lyoprotectant-enhanced cell-free protein synthesis for on-demand endotoxin-free therapeutic production, N Biotech, 53, 73, 10.1016/j.nbt.2019.07.004 Stark, 2019, On-demand, cell-free biomanufacturing of conjugate vaccines at the point-of-care, Synthetic Biology Park, 2009, A cell-free protein-producing gel, Nat Mater, 8, 432, 10.1038/nmat2419 Yang, 2013, Enhanced transcription and translation in clay hydrogel and implications for early life evolution, Sci Rep, 3, 10.1038/srep03165 Whitfield, 2019, Cell-free genetic devices confer autonomic and adaptive properties to hydrogels, Synthetic Biology Cui, 2020, A PEGDA/DNA hybrid hydrogel for cell-free protein synthesis, Front Chem, 8, 10.3389/fchem.2020.00028 Gregorio, 2020, Unlocking applications of cell-free biotechnology through enhanced shelf life and productivity of E. coli extracts, ACS Synth Biol, 10.1021/acssynbio.9b00433 Smith, 2014, Lyophilized Escherichia coli -based cell-free systems for robust, high-density, long-term storage, Biotechniques, 56, 10.2144/000114158 Dopp, 2019, Cell-free supplement mixtures: elucidating the history and biochemical utility of additives used to support in vitro protein synthesis in E. coli extract, Biotechnol Adv, 37, 246, 10.1016/j.biotechadv.2018.12.006 Chung, 2019, The effect of macromolecular crowding on single-round transcription by Escherichia coli RNA polymerase, Nucleic Acids Res, 47, 1440, 10.1093/nar/gky1277 Ge, 2011, Cell-free protein expression under macromolecular crowding conditions, PloS One, 6, 10.1371/journal.pone.0028707 Morelli, 2011, Effects of macromolecular crowding on genetic networks, Biophys J, 101, 2882, 10.1016/j.bpj.2011.10.053 Tan, 2013, Molecular crowding shapes gene expression in synthetic cellular nanosystems, Nat Nanotechnol, 8, 602, 10.1038/nnano.2013.132 Zimmerman, 1987, Macromolecular crowding increases binding of DNA polymerase to DNA: an adaptive effect, Proc Natl Acad Sci, 84, 1871, 10.1073/pnas.84.7.1871 Klumpp, 2013, Molecular crowding limits translation and cell growth, Proc Natl Acad Sci, 110, 16754, 10.1073/pnas.1310377110 Norred, 2018, Macromolecular crowding induces spatial correlations that control gene expression bursting patterns, ACS Synth Biol, 7, 1251, 10.1021/acssynbio.8b00139 Dennis, 2012, Stabilization of organophosphorus hydrolase by entrapment in silk fibroin: formation of a robust enzymatic material suitable for surface coatings, Biomacromolecules, 13, 2037, 10.1021/bm300358g Pritchard, 2012, Physical and chemical aspects of stabilization of compounds in silk, Biopolymers, 97, 479, 10.1002/bip.22026 Lu, 2010, Stabilization and release of enzymes from silk films, Macromol Biosci, 10, 359, 10.1002/mabi.200900388 Li, 2015, Silk-based stabilization of biomacromolecules, J Contr Release, 219, 416, 10.1016/j.jconrel.2015.09.037 Partlow, 2014, Highly tunable elastomeric silk biomaterials, Adv Funct Mater, 24, 4615, 10.1002/adfm.201400526 Kang, 2004, Crosslinking reaction of phenolic side chains in silk fibroin by tyrosinase, Fibers Polym, 5, 234, 10.1007/BF02903006 Kwon, 2015, High-throughput preparation methods of crude extract for robust cell-free protein synthesis, Sci Rep, 5, 10.1038/srep08663 Bundy, 2010, Site-specific incorporation of p -propargyloxyphenylalanine in a cell-free environment for direct Protein−Protein click conjugation, Bioconjugate Chem, 21, 255, 10.1021/bc9002844 Wang, 2019, Melanin produced by the fast-growing marine bacterium Vibrio natriegens through heterologous biosynthesis: characterization and application, Appl Environ Microbiol, 86 Rockwood, 2011, Materials fabrication from Bombyx mori silk fibroin, Nat Protoc, 6, 1612, 10.1038/nprot.2011.379 Jewett, 2004, Mimicking theEscherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis, Biotechnol Bioeng, 86, 19, 10.1002/bit.20026 Vepari, 2007, Silk as a biomaterial, Prog Polym Sci, 32, 991, 10.1016/j.progpolymsci.2007.05.013 Lu, 2009, Stabilization of enzymes in silk films, Biomacromolecules, 10, 1032, 10.1021/bm800956n Chirila, 2017, A comparative investigation of Bombyx mori silk fibroin hydrogels generated by chemical and enzymatic cross-linking: Bombyx mori Silk Fibroin Hydrogels, Biotechnol Appl Biochem, 64, 771, 10.1002/bab.1552 Partlow, 2016, Dityrosine cross-linking in designing biomaterials, ACS Biomater Sci Eng, 2, 2108, 10.1021/acsbiomaterials.6b00454 Goldfeder, 2014, Determination of tyrosinase substrate-binding modes reveals mechanistic differences between type-3 copper proteins, Nat Commun, 5, 10.1038/ncomms5505 Putthanarat, 2004, Nonlinear optical transmission of silk/green fluorescent protein (GFP) films, Polymer, 45, 8451, 10.1016/j.polymer.2004.10.014 Laohakunakorn, 2020, Bottom-up construction of complex biomolecular systems with cell-free synthetic biology, Front Bioeng Biotechnol, 8, 10.3389/fbioe.2020.00213