Sidestepping Darwin: horizontal gene transfer from plants to insects
Tài liệu tham khảo
Darwin, 2004
Berry, 2022, Mendel and Darwin, Proc Natl Acad Sci USA, 119, 10.1073/pnas.2122144119
Griffith, 1928, The significance of pneumococcal types, J Hyg, 27, 113, 10.1017/S0022172400031879
Ochman, 2000, Lateral gene transfer and the nature of bacterial innovation, Nature, 405, 299, 10.1038/35012500
Weiss, 2006, The discovery of endogenous retroviruses, Retrovirology, 3, 10.1186/1742-4690-3-67
Timmis, 2004, Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes, Nat Rev Genet, 5, 123, 10.1038/nrg1271
Bingham, 1982, The molecular basis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon family, Cell, 29, 995, 10.1016/0092-8674(82)90463-9
Engels, 1983, The P family of transposable elements in Drosophila, Annu Rev Genet, 17, 315, 10.1146/annurev.ge.17.120183.001531
Martin, 1986, Prokaryotic features of a nucleus-encoded enzyme. cDNA sequences for chloroplast and cytosolic glyceraldehyde-3-phosphate dehydrogenases from mustard (Sinapis alba), Eur J Biochem, 159, 323, 10.1111/j.1432-1033.1986.tb09871.x
Syvanen, 1985, Cross-species gene transfer; implications for a new theory of evolution, J Theor Biol, 112, 333, 10.1016/S0022-5193(85)80291-5
Doolittle, 1998, You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes, Trends Genet, 14, 307, 10.1016/S0168-9525(98)01494-2
Andersson, 2005, Lateral gene transfer in eukaryotes, CMLS Cell Mol Life Sci, 62, 1182, 10.1007/s00018-005-4539-z
Keeling, 2008, Horizontal gene transfer in eukaryotic evolution, Nat Rev: Genet, 9, 605, 10.1038/nrg2386
Martin, 2017, Too much eukaryote LGT, BioEssays, 39, 10.1002/bies.201700115
Martin, 2018, Eukaryote lateral gene transfer is Lamarckian, Nat Ecol Evol, 2, 10.1038/s41559-018-0521-7
Boto, 2018, Are there really too many eukaryote LGTs? A reply to William Martin, BioEssays, 40, 10.1002/bies.201800001
Leger, 2018, Demystifying eukaryote lateral gene transfer (response to Martin 2017 DOI: 10.1002/bies.201700115), BioEssays, 40, 10.1002/bies.201700242
Roger, 2018, Reply to “eukaryote lateral gene transfer is Lamarckian”, Nat Ecol Evol, 2, 10.1038/s41559-018-0522-6
Soucy, 2015, Horizontal gene transfer: building the web of life, Nat Rev: Genet, 16, 472, 10.1038/nrg3962
Aubin, 2021, Horizontal gene transfers in plants, Life, 11, 1, 10.3390/life11080857
Sibbald, 2020, Lateral gene transfer mechanisms and pan-genomes in eukaryotes, Trends Parasitol, 36, 927, 10.1016/j.pt.2020.07.014
Van Etten, 2020, Horizontal gene transfer in eukaryotes: not if, but how much?, Trends Genet, 36, 915, 10.1016/j.tig.2020.08.006
Irwin, 2021, Systematic evaluation of horizontal gene transfer between eukaryotes and viruses, Nat Microbiol, 7, 327, 10.1038/s41564-021-01026-3
Shen, 2018, Tempo and mode of genome evolution in the budding yeast subphylum, Cell, 175, 1533, 10.1016/j.cell.2018.10.023
Husnik, 2018, Functional horizontal gene transfer from bacteria to eukaryotes, Nat Rev Microbiol, 16, 67, 10.1038/nrmicro.2017.137
Keeling, 2009, Functional and ecological impacts of horizontal gene transfer in eukaryotes, Curr Opin Genet Dev, 19, 613, 10.1016/j.gde.2009.10.001
Boto, 2014, Horizontal gene transfer in the acquisition of novel traits by metazoans, Proc Biol Sci, 281
Simion, 2021, Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga, Sci Adv, 7, 10.1126/sciadv.abg4216
Paganini, 2012, Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes, PLoS One, 7, 10.1371/journal.pone.0050875
Dunning Hotopp, 2011, Horizontal gene transfer between bacteria and animals, Trends Genet, 27, 157, 10.1016/j.tig.2011.01.005
Li, 2022, HGT is widespread in insects and contributes to male courtship in lepidopterans, Cell, 185, 2975, 10.1016/j.cell.2022.06.014
Gilbert, 2018, Horizontal acquisition of transposable elements and viral sequences: patterns and consequences, Curr Opin Genet Dev, 49, 15, 10.1016/j.gde.2018.02.007
Hibdige, 2021, Widespread lateral gene transfer among grasses, New Phytol, 230, 2474, 10.1111/nph.17328
Ma, 2022, Major episodes of horizontal gene transfer drove the evolution of land plants, Mol Plant, 15, 857, 10.1016/j.molp.2022.02.001
Bartha, 2022, Intact ribosomal DNA arrays of Potentilla origin detected in Erythronium nucleus suggest recent eudicot-to-monocot horizontal transfer, New Phytol, 235, 1246, 10.1111/nph.18171
Cai, 2021, Deeply altered genome architecture in the endoparasitic flowering plant Sapria himalayana Griff. (Rafflesiaceae), Curr Biol, 31, 1002, 10.1016/j.cub.2020.12.045
Graham, 2021, Horizontal gene transfer in vertebrates: a fishy tale, Trends Genet, 37, 501, 10.1016/j.tig.2021.02.006
Sharma, 2015, Deep sequencing revealed molecular signature of horizontal gene transfer of plant like transcripts in the mosquito Anopheles culicifacies: an evolutionary puzzle, F1000Res, 4, 1, 10.12688/f1000research.7534.1
Lin, 2016, An ancient trans-kingdom horizontal transfer of Penelope -like retroelements from arthropods to conifers, Genome Biol Evol, 8, 1252
Gao, 2018, Horizontal transfer of non-LTR retrotransposons from arthropods to flowering plants, Mol Biol Evol, 35, 354, 10.1093/molbev/msx275
Lapadula, 2020, Whitefly genomes contain ribotoxin coding genes acquired from plants, Sci Rep, 10, 10.1038/s41598-020-72267-1
Chen, 2016, The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance, BMC Biol, 14, 10.1186/s12915-016-0321-y
Xia, 2021, Whitefly hijacks a plant detoxification gene that neutralizes plant toxins, Cell, 184, 1693, 10.1016/j.cell.2021.02.014
Gilbert, 2022, Multiple horizontal acquisitions of plant genes in the whitefly Bemisia tabaci, Genome Biol Evol, 14, 10.1093/gbe/evac141
Chen, 2019, Genome of the African cassava whitefly Bemisia tabaci and distribution and genetic diversity of cassava-colonizing whiteflies in Africa, Insect Biochem Mol Biol, 110, 112, 10.1016/j.ibmb.2019.05.003
Misof, 2014, Phylogenomics resolves the timing and pattern of insect evolution, Science, 346, 763, 10.1126/science.1257570
Salzberg, 2017, Horizontal gene transfer is not a hallmark of the human genome, Genome Biol, 18, 10.1186/s13059-017-1214-2
Koutsovoulos, 2016, No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini, Proc Natl Acad Sci USA, 113, 5053, 10.1073/pnas.1600338113
Dunning Hotopp, 2007, Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes, Science, 317, 1753, 10.1126/science.1142490
Dunning Hotopp, 2018, Grafting or pruning in the animal tree: lateral gene transfer and gene loss?, BMC Genom, 19, 1, 10.1186/s12864-018-4832-5
Koutsovoulos, 2022, AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers, PLoS Comput Biol, 18, 10.1371/journal.pcbi.1010686
Mirdita, 2021, Fast and sensitive taxonomic assignment to metagenomic contigs, Bioinformatics, 37, 3029, 10.1093/bioinformatics/btab184
Hingamp, 2013, Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes, ISME J, 7, 1678, 10.1038/ismej.2013.59
Wybouw, 2016, Horizontal gene transfer contributes to the evolution of arthropod herbivory, Genome Biol Evol, 8, 1785, 10.1093/gbe/evw119
Whiteman, 2021, Whiteflies weaponize a plant defense via horizontal gene transfer, Cell, 184, 1657, 10.1016/j.cell.2021.03.017
Zhang, 2021, The plant cell wall: biosynthesis, construction, and functions, J Integr Plant Biol, 63, 251, 10.1111/jipb.13055
D’Auria, 2006, Acyltransferases in plants: a good time to be BAHD, Curr Opin Plant Biol, 9, 331, 10.1016/j.pbi.2006.03.016
Panikashvili, 2009, The Arabidopsis DCR encoding a soluble BAHD acyltransferase is required for cutin polyester formation and seed hydration properties, Plant Physiol, 151, 1773, 10.1104/pp.109.143388
Li, 2007, Identification of acyltransferases required for cutin biosynthesis and production of cutin with suberin-like monomers, Proc Natl Acad Sci USA, 104, 18339, 10.1073/pnas.0706984104
Woloshuk, 1991, Pathogen-induced proteins with inhibitory activity toward Phytophthora infestans, Plant Cell, 3, 619
Figueiredo, 2014, Subtilisin-like proteases in plant–pathogen recognition and immune priming: a perspective, Front Plant Sci, 5, 10.3389/fpls.2014.00739
Veronese, 2003, In defense against pathogens. Both plant sentinels and foot soldiers need to know the enemy, Plant Physiol, 131, 1580, 10.1104/pp.102.013417
Zhu, 2018, The plant ribosome-inactivating proteins play important roles in defense against pathogens and insect pest attacks, Front Plant Sci, 9
Hamilton, 2016, A ribosome-inactivating protein in a Drosophila defensive symbiont, Proc Natl Acad Sci USA, 113, 350, 10.1073/pnas.1518648113
Ballinger, 2017, Generality of toxins in defensive symbiosis: Ribosome-inactivating proteins and defense against parasitic wasps in Drosophila, PLoS Pathog, 13, 10.1371/journal.ppat.1006431
Nakabachi, 2015, Horizontal gene transfers in insects, Curr Opin Insect Sci, 7, 24, 10.1016/j.cois.2015.03.006
Lacroix, 2016, Transfer of DNA from bacteria to eukaryotes, MBio, 7, 10.1128/mBio.00863-16
Mouton, 2022, Analyses of symbiotic bacterial communities in the plant pest Bemisia tabaci reveal high prevalence of Candidatus Hemipteriphilus asiaticus on the African continent, Peer Community J, 2, 10.24072/pcjournal.103
Muller, 2021, Genome-wide patterns of bracovirus chromosomal integration into multiple host tissues during parasitism, J Virol, 95, 10.1128/JVI.00684-21
Fuentes, 2014, Horizontal genome transfer as an asexual path to the formation of new species, Nature, 511, 232, 10.1038/nature13291
Wickell, 2020, On the evolutionary significance of horizontal gene transfers in plants, New Phytol, 225, 113, 10.1111/nph.16022
Kunte, 2020, Prospects, challenges and current status of RNAi through insect feeding, Pest Manag Sci, 76, 26, 10.1002/ps.5588
Ono, 2019, Exosome-mediated horizontal gene transfer occurs in double-strand break repair during genome editing, Commun Biol, 2, 1, 10.1038/s42003-019-0300-2
Gilbert, 2017, Viruses as vectors of horizontal transfer of genetic material in eukaryotes, Curr Opin Virol, 25, 16, 10.1016/j.coviro.2017.06.005
Hogenhout, 2008, Insect vector interactions with persistently transmitted viruses, Annu Rev Phytopathol, 46, 327, 10.1146/annurev.phyto.022508.092135
Fiallo-Olivé, 2023, Begomoviruses: what is the secret(s) of their success?, Trends Plant Sci, 10.1016/j.tplants.2023.01.012
Gilbert, 2021, Transposable elements and the evolution of insects, Annu Rev Entomol, 66, 355, 10.1146/annurev-ento-070720-074650
Wang, 2022, Silencing horizontally transferred genes for the control of the whitefly Bemisia tabaci, J Pest Sci, 96, 195, 10.1007/s10340-022-01492-6
Mugerwa, 2018, African ancestry of New World, Bemisia tabaci-whitefly species, Sci Rep, 8, 1, 10.1038/s41598-018-20956-3