Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio)

Barrie D. Robison1, Robert E. Drew1, Gordon K. Murdoch2, Madison Powell3, Kenneth J. Rodnick4, Matt Settles5, David Stone3, Erin Churchill1, Rodney A. Hill2, Madhusudhan R. Papasani2, Solange S. Lewis2, Ronald W. Hardy3
1Department of Biological Sciences and Center for Reproductive Biology, University of Idaho, Moscow, ID 83844-3051 USA
2Department of Animal and Veterinary Science, University of Idaho, Moscow, ID, 83844, USA
3Hagerman Fish Culture Experiment Station, University of Idaho, Hagerman, ID, USA
4Department of Biological Sciences, Idaho State University, Pocatello, ID, USA
5Department of Computer Science and Program in Bioinformatics and Computational Biology, University of Idaho, Moscow, ID, USA

Tài liệu tham khảo

Adamson, 2006, Hepatocyte nuclear factor-4a contributes to carbohydrate-induced transcriptional activation of hepatic fatty acid synthase, Biochem. J., 399, 285, 10.1042/BJ20060659 Aubin-Horth, 2005, Alternative life histories shape brain gene expression profiles in males of the same population, Proc. R. Soc. Lond., Ser. B., 272, 1655, 10.1098/rspb.2005.3125 Bell, 2000, Contribution of de novo protein synthesis to the hypertrophic effect of IGF-1 but not of thyroid hormones in adult ventricular cardiomyocytes, Mol. Cell. Biochem., 206, 113, 10.1023/A:1007014500965 Benjamini, 2000, On the adaptive control of the false discovery fate in multiple testing with independent statistics, J. Educ. Behav. Stat., 25, 60, 10.3102/10769986025001060 Brownlee, 2005, The patholobiology of diabetic complications: a unifying mechanism, Diabetes, 54, 1615, 10.2337/diabetes.54.6.1615 Burgess, 2007, Cytosolic phosphoenolpyruvate carboxykinase does not solely control the rate of hepatic gluconeogenesis in the intact mouse liver, Cell. Metab., 5, 313, 10.1016/j.cmet.2007.03.004 Clodfelter, 2006, Sex-dependent liver gene expression is extensive and largely dependent upon signal transducer and activator of transcription 5b (STAT5b): STAT5b-dependent activation of male genes and repression of female genes revealed by microarray analysis, Mol. Endocrinol., 20, 1333, 10.1210/me.2005-0489 Clodfelter, 2007, Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis, Physiol. Genomics., 31, 63, 10.1152/physiolgenomics.00055.2007 Cunningham, 1999, Leptin's action on the reproductive axis: perspectives and mechanism, Biol. Reprod., 60, 216, 10.1095/biolreprod60.2.216 Diamond, 1993, Novel delayed–early and highly insulin-induced growth response genes. Identification of HRS, a potential regulator of alternative pre-mRNA splicing, J. Biol. Chem., 268, 15185, 10.1016/S0021-9258(18)82454-1 Elo, 2007, Larval zebrafish as a model for glucose metabolism: expression of phsophoenolpyruvate carboxykinase as a marker for exposure to anti-diabetic compounds, J. Mol. Endocrinol., 38, 433, 10.1677/JME-06-0037 Flury, 2005, INSIG: a broadly conserved transmembrane chaperone for sterol-sensing domain proteins, EMBO J., 24, 3917, 10.1038/sj.emboj.7600855 Gabillard, 2003, Differential expression of the two GH genes during embryonic development of rainbow trout Oncorhynchus mykiss in relation with the IGFs system, Mol. Reprod. Dev., 64, 32, 10.1002/mrd.10222 Gnugge, 2004, Pancreas development in zebrafish, Method Cell. Biol., 76, 531, 10.1016/S0091-679X(04)76024-0 Gong, 2004, Two distinct teleost hepatocyte nuclear factor 1 genes, hnf1a/tcf1 and hnf1b/tcf2, abundantly expressed in liver, pancreas, gut, and kidney of zebrafish, Gene, 338, 35, 10.1016/j.gene.2004.05.003 Hemre, 2002, Carbohydrates in fish nutrition: effects on growth, glucose metabolism and hepatic enzymes, Aquac. Nutr., 8, 175, 10.1046/j.1365-2095.2002.00200.x Hill, 1999, Action of long(R3)-insulin-like growth factor-1 on protein metabolism in beef heifers, Dom. Anim. Endocrinol., 16, 219, 10.1016/S0739-7240(99)00015-6 Hoffmann, 2006, Hepatic gene expression profiling using Genechips in zebrafish exposed to 17a-ethnylestradiol, Aquat. Toxicol., 79, 233, 10.1016/j.aquatox.2006.06.009 Irizarry, 2003, Exploration, normalization, and summaries of high density oligonucleotide array probe level data, Biostatistics, 4, 249, 10.1093/biostatistics/4.2.249 Kim, 2004, SREBP-1c mediates the insulin-dependent hepatic glucokinase expression, J. Biol. Chem., 279, 30823, 10.1074/jbc.M313223200 Ma, 2006, ChREBP Mlx is the principal mediator of glucose-induced gene expression in the liver, J. Biol. Chem., 281, 28721, 10.1074/jbc.M601576200 Margetic, 2002, Leptin: a review of its peripheral actions and interactions, Int. J. Obes. Relat. Metab. Disord., 26, 1407, 10.1038/sj.ijo.0802142 Meugnier, 2007, Acute hyperglycemia induces a global downregulation of gene expression in adipose tissue and skeletal muscle of healthy subjects, Diabetes, 56, 992, 10.2337/db06-1242 Mitro, 2007, The nuclear receptor LXR is a glucose sensor, Nature, 445, 219, 10.1038/nature05449 Nakagawa, 2006, TFE3 transcriptionally activates hepatic IRS-2, participates in insulin signaling and ameliorates diabetes, Nat. Med., 12, 107, 10.1038/nm1334 Pankiewicz, 2003, Tissue specific, sex and age-related differences in the 6-phosphogluconate dehydrogenase gene expression, Int. J. Biochem. Cell. Biol., 35, 235, 10.1016/S1357-2725(02)00084-5 Panserat, 2001, Glucokinase is highly induced and glucose-6-phosphatase poorly repressed in liver of rainbow trout (Oncorhynchus mykiss) by a single meal with glucose, Comp. Biochem. Physiol. B., 128, 275, 10.1016/S1096-4959(00)00322-5 Panserat, 2001, Ontogenesis of hexokinase I and hexokinase IV (glucokinase) gene expressions in common carp (Cyprinus carpio) related to diet, Brit. J. Nutr., 85, 649, 10.1079/BJN2001347 Panserat, 2002, Nutritional regulation of hepatic glucose metabolism in fish: example of a poor user of dietary carbohydrates, the rainbow trout, Product. Anim., 15, 109 Panserat, 2002, Gluconeogenic enzyme gene expression is decreased by dietary carbohydrates in common carp (Cyprinus carpio) and gilthead seabream (Sparus aurata), Biochim. Biophys. Acta., 1579, 35, 10.1016/S0167-4781(02)00501-8 Panserat, 2000, Hepatic glucokinase is induced by dietary carbohydrates in rainbow trout, gilthead seabream, and common carp, Am. J. Physiol., 278, R1164 Panserat, 1999, Lack of significant long-term effect of dietary carbohydrates on hepatic glucose-6-phosphatase expression in rainbow trout, J. Nutr. Biochem., 11, 22, 10.1016/S0955-2863(99)00067-4 Papasani, 2006, Early developmental expression of two zebrafish insulin genes, Physiol. Genomics., 27, 79, 10.1152/physiolgenomics.00012.2006 Park, 2006, Signalling cross-talk between hepatocyte nuclear factor 4 alpha and growth-hormone-activated STAT5b, Biochem. J., 397, 159, 10.1042/BJ20060332 Pette, 1979, The constant proportion enzyme group concept in the selection of reference enzymes in metabolism, Ciba. Found. Symp., 73, 231 Rencurel, 1998, Regulation of liver gene expression by glucose, Proc. Nutr. Soc., 57, 265, 10.1079/PNS19980041 Rinn, 2005, Sexual dimorphism in mammalian gene expression, Trends Genet., 21, 298, 10.1016/j.tig.2005.03.005 Santos, 2007, Molecular basis of sex and reproductive status in breeding zebrafish, Physiol. Genomics, 30, 111, 10.1152/physiolgenomics.00284.2006 Trushenski, 2006, Challenges and opportunities in finfish nutrition, North. Am. J. Aquac., 68, 122, 10.1577/A05-006.1 Verma, 2006, Sex-dependent expression of seven housekeeping genes in rat liver, Hepatology, 21, 1004 Wen, 2005, Genome-wide identification of female enriched genes in zebrafish, Dev. Dyn., 232, 171, 10.1002/dvdy.20210 Yang, 2007, Tissue-specific expression and regulation of sexually dimorphic genes in mice, Genome Res., 16, 995, 10.1101/gr.5217506