Sex bias miRNAs in Cynoglossus semilaevis could play a role in transgenerational inheritance

Na Zhao1,2, Lei Jia3, Xiaoxu He3, Bo Zhang1,3
1Southern Marine Science and Engineering Guangdong Laboratory-Zhanjiang
2Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources (Shanghai Ocean University), Ministry of Education, China
3Tianjin Fisheries Research Institute, Tianjin, China

Tài liệu tham khảo

Abu-Halima, 2020, Insights from circulating microRNAs in cardiovascular entities in turner syndrome patients, PLoS One, 15, 10.1371/journal.pone.0231402 Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Ambros, 2004, The functions of animal microRNAs, Nature, 431, 350, 10.1038/nature02871 Anders, 2010, Differential expression analysis for sequence count data, Genome Biol., 11, R106, 10.1186/gb-2010-11-10-r106 Audic, 1997, The significance of digital expression profiles, Genome Res., 7, 986, 10.1101/gr.7.10.986 Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5 Bartel, 2009, MicroRNAs: target recognition and regulatory functions, Cell, 136, 215, 10.1016/j.cell.2009.01.002 Bartel, 2018, Metazoan microRNAs, Cell, 173, 20, 10.1016/j.cell.2018.03.006 Chattopadhyay, 2021, Noncoding RNAs: modulators and modulatable players during infection-induced stress response, Brief Funct. Genomic, 20, 28, 10.1093/bfgp/elaa026 Chen, 2007, Isolation of female-specific AFLP markers and molecular identification of genetic sex in half-smooth tongue sole (Cynoglossus semilaevis), Mar. Biotechnol. (NY), 9, 273, 10.1007/s10126-006-6081-x Chen, 2009, Artificial gynogenesis and sex determination in half-smooth tongue sole (Cynoglossus semilaevis), Mar. Biotechnol. (NY), 11, 243, 10.1007/s10126-008-9139-0 Chen, 2018, MiR-199a-5p regulates sirtuin1 and PI3K in the rat hippocampus with intrauterine growth restriction, Sci. Rep., 8, 13813, 10.1038/s41598-018-32189-5 English, 2018, MicroRNAs regulate survival in oxygen-deprived environments, J. Exp. Biol., 221 Eslamloo, 2018, Discovery of microRNAs associated with the antiviral immune response of Atlantic cod macrophages, Mol. Immunol., 93, 152, 10.1016/j.molimm.2017.11.015 Fabian, 2010, Regulation of mRNA translation and stability by microRNAs, Annu. Rev. Biochem., 79, 351, 10.1146/annurev-biochem-060308-103103 Fan, 2018, Microrna-26b-5p regulates cell proliferation, invasion and metastasis in human intrahepatic cholangiocarcinoma by targeting s100a7, Oncol. Lett., 15, 386 Friedländer, 2012, MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades, Nucleic Acids Res., 40, 37, 10.1093/nar/gkr688 Fullston, 2013, Lane Michelle. Paternal obesity initiates metabolic disturbances in two generations of mice with incomplete penetrance to the F2 generation and alters the transcriptional profile of testis and sperm microRNA content, FASEB J., 27, 4226, 10.1096/fj.12-224048 Griffiths-Jones, 2003, Rfam: an RNA family database, Nucleic Acids Res., 31, 439, 10.1093/nar/gkg006 Griffiths-Jones, 2008, MiRBase: tools for microRNA genomics, Nucleic Acids Res., 36, D154, 10.1093/nar/gkm952 Gu, 2014, Differential expression analysis of paralichthys olivaceus micrornas in adult ovary and testis by deep sequencing, Gen. Comp. Endocrinol., 204, 181, 10.1016/j.ygcen.2014.05.019 Jia, 2015, Identification of MicroRNAs in Zebrafish spermatozoa, Zebrafish, 12, 387, 10.1089/zeb.2015.1115 Jing, 2014, Sex-biased miRNAs in gonad and their potential roles for testis development in yellow catfish, PLoS One, 9, 10.1371/journal.pone.0107946 Joo, 2019, Transgenerational inheritance: how impacts to the epigenetic and genetic information of parents affect offspring health, Hum. Reprod. Update, 25, 518 Kim, 2016, Mouse-specific up-regulation of Ccnb1 expression by miR-199a-5p in keratinocyte, FEBS Open Bio, 6, 1131, 10.1002/2211-5463.12133 Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6 Lee, 1993, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14, Cell, 75, 843, 10.1016/0092-8674(93)90529-Y Liu, 2016, Overexpression of miR-26b-5p regulates the cell cycle by targeting CCND2 in GC-2 cells under exposure to extremely low frequency electromagnetic fields, Cell Cycle, 15, 357, 10.1080/15384101.2015.1120924 Liu, 2019, Transcriptome profiling insights the feature of sex reversal induced by high temperature in tongue sole Cynoglossus semilaevis, Front. Genet., 10, 522, 10.3389/fgene.2019.00522 Niu, 2020, The mir-26b-5p/kpna2 axis is an important regulator of burkitt lymphoma cell growth, Cancers, 12, 1464, 10.3390/cancers12061464 Oliveira Catarina, 2020, Kisspeptin influences the reproductive axis and circulating levels of microRNAs in Senegalese sole, Int. J. Mol. Sci., 21, 9051, 10.3390/ijms21239051 Ord, 2020, Paternal effects in a wild-type zebrafish implicate a role of sperm-derived small rnas, Mol. Ecol., 29, 2722, 10.1111/mec.15505 Peterson, 2009, Micrornas and metazoan macroevolution: insights into canalization, complexity, and the cambrian explosion, Bio Essays, 31, 736 Rassoulzadegan, 2015, Epigenetic heredity: RNA-mediated modes of phenotypic variation, Ann. N. Y. Acad. Sci., 1341, 172, 10.1111/nyas.12694 Rassoulzadegan, 2006, Rna-mediated non-mendelian inheritance of an epigenetic change in the mouse, Nature, 441, 469, 10.1038/nature04674 Riesco, 2019, Male reproductive dysfunction in solea senegalensis: new insights into an unsolved question, Reprod. Fertil. Dev. NLM, 31, 1104, 10.1071/RD18453 Rubio, 2012, MicroRNAs in metamorphic and non-metamorphic transitions in hemimetabolan insect metamorphosis, BMC Genomics, 13, 386, 10.1186/1471-2164-13-386 Shao, 2014, Epigenetic modification and inheritance in sexual reversal of fish, Genome Res., 24, 604, 10.1101/gr.162172.113 Tao, 2016, Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation, BMC Genomics, 17, 328, 10.1186/s12864-016-2636-z Tao, 2018, MicroRNA alternations in the testes related to the sterility of triploid fish, Mar. Biotechnol. (NY), 20, 739, 10.1007/s10126-018-9845-1 Tod, 2016, Sperm microRNA content is altered in a mouse model of male obesity, but the same suite of microRNAs are not altered in offspring’s sperm, PLoS One, 11 Tse, 2016, Hypoxia alters testicular functions of marine medaka through microRNAs regulation, Aquat. Toxicol., 180, 266, 10.1016/j.aquatox.2016.10.007 Wagner, 2012, Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples, Theory Biosci., 131, 281, 10.1007/s12064-012-0162-3 Wang, 2015, MicroRNA sequence profiling reveals novel osmoregulatory microRNAexpression patterns in catadromous eel Anguilla marmorata, PLoS One, 10 Wang, 2019, Transcriptome of gonads from high temperature induced sex reversal during sex determination and differentiation in Chinese tongue sole, Cynoglossus semilaevis, Front. Genet., 10, 1128, 10.3389/fgene.2019.01128 Wei, 2015, Environmental epigenetic inheritance through gametes and implications for human reproduction, Hum. Reprod. Update, 21, 194, 10.1093/humupd/dmu061 Wei, 2019, MicroRNA-199a-5p functions as a tumor suppressor in oral squamous cell carcinoma via targeting the IKKβ/NF-κB signaling pathway, Int. J. Mol. Med., 43, 1585 White, 2017, A high-resolution mRNA expression time course of embryonic development in zebrafish, ELife, 6, 10.7554/eLife.30860 Williams, 2008, Functional aspects of animal microRNAs, Cell. Mol. Life Sci., 65, 545, 10.1007/s00018-007-7355-9 Xiao, 2014, Identification and characterization of micrornas in ovary and testis of nile tilapia (oreochromis niloticus) by using solexa sequencing technology, PLoS One, 9 Zhang, 2018, Identification and differential expression of micrornas in testis and ovary of amur sturgeon ( acipenser schrenckii ), Gene, 658, 36, 10.1016/j.gene.2018.03.014 Zhang, 2019, Seminal plasma exosomes: promising biomarkers for identification of male and pseudo-males in Cynoglossus semilaevis, Mar. Biotechnol. (NY), 21, 310, 10.1007/s10126-019-09881-2 Zhang B, Zhao N, Liu YY, Jia L, Fu Y, He XX, Liu KF, Xu ZJ, Bao BL., 2019b. Novel molecular markers for high-throughput sex characterization of Cynoglossus semilaevis, Aquaculture, 513, 15, 734331, doi.org/https://doi.org/10.1016/j.aquaculture.2019.734331. Zhang, 2020, Mir-27-3p inhibition restore fibroblasts viability in diabetic wound by targeting nova1, Aging (Albany NY), 12, 12841, 10.18632/aging.103266 Zhang, 2020, Mir-125b-5p/stat3 pathway regulated by mtorc1 plays a critical role in promoting cell proliferation and tumor growth, J. Cancer, 11, 919, 10.7150/jca.33696 Zhang, 2020, Identification and application of piwi-interacting RNAs from seminal plasma exosomes in Cynoglossus semilaevis, BMC Genomics, 21, 302, 10.1186/s12864-020-6660-7 Zhang, 2020, A combination of genome-wide association study screening and SNaPshot for detecting sex-related SNPs and genes in Cynoglossus semilaevis, Comp. Biochem. Physiol. Part D Genomic Proteomic, 35, 100711, 10.1016/j.cbd.2020.100711 Zhao, 2020, Misuse of rpkm or tpm normalization when comparing across samples and sequencing protocols, RNA (New York, N.Y.), 26, 903, 10.1261/rna.074922.120 Zhao, 2020, Detecting Cynoglossus semilaevis infected with Vibrio harveyi using micro RNAs from mucous exosomes, Mol. Immunol., 128, 268, 10.1016/j.molimm.2020.11.004 Zhou, 2016, MiR-27a-3p functions as an oncogene in gastric cancer by targeting BTG2, Oncotarget, 7, 51943, 10.18632/oncotarget.10460