Sự đồng nhất hóa chuỗi và định vị nhiễm sắc thể của vệ tinh VicTR-B khác nhau giữa các loài Vicia có quan hệ gần gũi

Alkhimova OG, Mazurok NA, Potapova TA, Zakian SM, Heslop-Harrison JS, Vershinin AV (2004) Diverse patterns of the tandem repeats organization in rye chromosomes. Chromosoma 113:42–52 Baranczewski P, Nehls P, Rieger R, Pich U, Rajewsky MF, Schubert I (1997) Formation and repair of O6-methylguanine in recombination hot spots of plant chromosomes. Environ Mol Mutagen 29:394–399 Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215–220 Crooks GE, Hon G, Chandonia JM, Brenner SE (2004) WebLogo: a sequence logo generator. Genome Res 14:1188–1190 Dechyeva D, Gindullis F, Schmidt T (2003) Divergence of satellite DNA and interspersion of dispersed repeats in the genome of the wild beet Beta procumbens. Chromosome Res 11:3–21 Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21 Dover G (1982) Molecular drive: a cohesive mode of species evolution. Nature 299:111–116 Dover G (2002) Molecular drive. Trends Genet 18:587–589 Elder JFE, Turner BJ (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Q Rev Biol 70:297–320 Gazdová B, Široký J, Fajkus J, Brzobohatý B, Kenton A, Parokonny A, Heslop-Harrison JS, Palme K, Bezděk M (1995) Characterization of a new family of tobacco highly repetitive DNA, GRS, specific for the Nicotiana tomentosiformis genomic component. Chromosome Res 3:245–254 Grebenstein B, Grebenstein O, Sauer W, Hemleben V (1996) Distribution and complex organization of satellite DNA sequences in Aveneae species. Genome 39:1045–1050 Hall SE, Luo S, Hall AE, Preuss D (2005) Differential rates of local and global homogenization in centromere satellites from Arabidopsis relatives. Genetics 170:1913–1927 Herzel H, Weiss O, Trifonov EN (1999) 10–11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics 15:187–193 Heslop-Harrison JS, Murata M, Ogura Y, Schwarzacher T, Motoyoshi F (1999) Polymorphisms and genomic organization of repetitive DNA from centromeric regions of Arabidopsis chromosomes. Plant Cell 11:31–42 King K, Jobst J, Hemleben V (1995) Differential homogenization and amplification of two satellite DNAs in the genus Cucurbita (Cucurbitaceae). J Mol Evol 41:996–1005 Kubis S, Schmidt T, Heslop-Harrison JS (1998) Repetitive DNA elements as a major component of plant genomes. Ann Bot 82:45–55 Langdon T, Seago C, Jones RN, Ougham H, Thomas H, Forster JW, Jenkins G (2000) De novo evolution of satellite DNA on rye B chromosome. Genetics 154:869–884 Lim KY, Skalická K, Koukalová B, Volkov RA, Matyášek R, Hemleben V, Leitch AR, Kovařík A (2004) Dynamic changes in the distribution of a satellite homologous to intergenic 26-18S rDNA spacer in the evolution of Nicotiana. Genetics 166:1935–1946 Linardopoulou EV, Williams EM, Fan Y, Friedman C, Young JM, Trask BJ (2005) Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 437:94–100 Macas J, Požárková D, Navrátilová A, Nouzová M, Neumann P (2000) Two new families of tandem repeats isolated from genus Vicia using genomic self-priming PCR. Mol Gen Genet 263:741–751 Macas J, Mészáros T, Nouzová M (2002) PlantSat: a specialized database for plant satellite repeats. Bioinformatics 18:28–35 Macas J, Navrátilová A, Mészáros T (2003) Sequence subfamilies of satellite repeats related to rDNA intergenic spacer are differentially amplified on Vicia sativa chromosomes. Chromosoma 112:152–158 Matyášek R, Gazdová B, Fajkus J, Bezděk M (1997) NTRS, a new family of highly repetitive DNA specific for the T1 chromosome of tobacco. Chromosoma 106:369–379 Meyne J, Goodwin EH (1995) Direction of DNA sequences within chromatids determined using strand-specific FISH. Chromosome Res 3:375–378 Morgante M, Jurman I, Shi L, Zhu T, Keim P, Rafalski JA (1997) The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity. Chromosome Res 5:363–373 Navrátilová A, Neumann P, Macas J (2003) Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences. Ann Bot 91:921–926 Navrátilová A, Neumann P, Macas J (2005) Long-range organization of plant satellite repeats investigated using strand-specific FISH. Cytogenet Genome Res 109:58–62 Nouzová M, Kubaláková M, Doleželová M, Koblížková A, Neumann P, Doleel J, Macas J (1999) Cloning and characterization of new repetitive sequences in field bean (Vicia faba L.). Ann Bot 83:535–541 Pedrosa A, Jantsch MF, Moscone EA, Ambros PF, Schweizer D (2001) Characterization of pericentromeric and sticky intercalary heterochromatin in Ornithogalum longibracteatum (Hyacinthaceae). Chromosoma 110:203–213 Sanger F, Nicklen D, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci U S A 74:5463–5467 Schindelhauer D, Schwarz T (2002) Evidence for a fast, intrachromosomal conversion mechanism from mapping of nucleotide variants within a homogeneous α-satellite DNA array. Genome Res 12:1815–1826 Schmidt T, Heslop-Harrison JS (1998) Genomes, genes and junk: the large-scale organization of plant chromosomes. Trends Plant Sci 3:195–199 Schneider TD, Stephens RM (1990) Sequence Logos: a new way to display consensus sequences. Nucleic Acids Res 18:6097–6100 Schubert I, Rieger R, Fuchs J, Pich U (1994) Sequence organization and the mechanism of interstitial deletion clustering in a plant genome (Vicia faba). Mutation Res 325:1–5 Shibata F, Hizume M, Kuroki Y (2000) Molecular cytogenetic analysis of supernumerary heterochromatic segments in Rumex acetosa. Genome 43:391–397 Skalická K, Lim KY, Matyášek R, Matzke M, Leitch AR, Kovařík A (2005) Preferential elimination of repeated DNA sequences from the parental, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco. New Phytol 166:291–303 Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5:233–241 Stephan W (1989) Tandem-repetitive noncoding DNA: forms and forces. Mol Biol Evol 6:198–212 Stephan W, Cho S (1994) Possible role of natural selection in the formation of tandem-repetitive noncoding DNA. Genetics 136:333–341 Tek A, Song J, Macas J, Jiang J (2005) Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences. Genetics 170:1231–1238 Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 Ugarkovic D, Plohl M (2002) Variation in satellite DNA profiles—causes and effects. EMBO J 21:5955–5959 Vershinin AV, Heslop-Harrison JS (1998) Comparative analysis of the nucleosomal structure of rye, wheat and their relatives. Plant Mol Biol 36:149–161