Semiautomatic carotid lumen segmentation for quantification of lumen geometry in multispectral MRI

Adame, 2004, Automatic segmentation and plaque characterization in atherosclerotic carotid artery MR images, Magnetic Resonance Materials in Physics, Biology and Medicine, 16, 227, 10.1007/s10334-003-0030-8 Antiga, 2003, Computational geometry for patient-specific reconstruction and meshing of blood vessels from MR and CT angiography, IEEE Transactions on Medical Imaging, 22, 674, 10.1109/TMI.2003.812261 Antiga, 2004, Robust and objective decomposition and mapping of bifurcating vessels, IEEE Transactions on Medical Imaging, 23, 704, 10.1109/TMI.2004.826946 Berenson, 1998, Association between multiple cardiovascular risk factors and atherosclerosis in children and young adults, New England Journal of Medicine, 338, 1650, 10.1056/NEJM199806043382302 Bijari, 2011, Scan–rescan reproducibility of carotid bifurcation geometry from routine contrast-enhanced MR angiography, Journal of Magnetic Resonance Imaging, 33, 482, 10.1002/jmri.22440 Bullitt, 2003, Measuring tortuosity of the intracerebral vasculature from MRA images, IEEE Transactions on Medical Imaging, 22, 1163, 10.1109/TMI.2003.816964 Caselles, 1997, Geodesic active contours, International Journal of Computer Vision, 22, 61, 10.1023/A:1007979827043 Caselles, 1997, Minimal surfaces based object segmentation, IEEE Transactions on Pattern Analysis and Machine Intelligence, 19, 394, 10.1109/34.588023 Chambless, 1997, Association of coronary heart disease incidence with carotid arterial wall thickness and major risk factors: the atherosclerosis risk in communities (ARIC) study, American Journal of Epidemiology, 146, 483, 10.1093/oxfordjournals.aje.a009302 Dice, 1945, Measures of the amount of ecologic association between species, Ecology, 26, 297, 10.2307/1932409 Dijkstra, 1959, A note on two problems in connexion with graphs, Numerische Mathematik, 1, 269, 10.1007/BF01386390 Firouzian, 2010, Intracranial aneurysm segmentation in 3d ct angiography: method and quantitative validation with and without prior noise filtering, European Journal of Radiology Friedman, 1983, Arterial geometry affects hemodynamics: a potential risk factor for atherosclerosis, Atherosclerosis, 46, 225, 10.1016/0021-9150(83)90113-2 Gülsün, 2008, Robust vessel tree modeling, 602 Hameeteman, K., Freiman, M., Zuluaga, M., Joskowicz, L., Rozie, S., van Gils, M., van den Borne, L., Sosna, J., Berman, P., Cohen, N., Douek, P., Sánchez, I., Aissat, M., van der Lugt, A., Krestin, G.P., Niessen, W., van Walsum, T., 2009. 3D segmentation in the clinic: a grand challenge iii, carotid lumen segmentation and stenosis grading challenge. In: MICCAI2009 Workshop Proceedings. Hameeteman, 2011, Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading, Medical Image Analysis, 15, 477, 10.1016/j.media.2011.02.004 Han, 2003, A topology preserving level set method for geometric deformable models, IEEE Transactions on Pattern Analysis and Machine Intelligence, 25, 755, 10.1109/TPAMI.2003.1201824 van Heekeren, 2007, Finding the minimum-cost path without cutting corners, Lecture Notes in Computer Science, 4522, 263, 10.1007/978-3-540-73040-8_27 Hofman, 2009, The Rotterdam study: 2010 objectives and design update, European Journal of Epidemiology, 24, 553, 10.1007/s10654-009-9386-z Hoogeveen, 1998, Limits to the accuracy of vessel diameter measurement in mr angiography, Journal of Magnetic Resonance Imaging, 8, 1228, 10.1002/jmri.1880080608 Ibanez, L., Schroeder, W., Ng, L., Cates, J., 2005. The ITK Software Guide. Jin, 2004, Software for interactive segmentation of the carotid artery from 3D black blood magnetic resonance images, Computer Methods and Programs in Biomedicine, 75, 31, 10.1016/j.cmpb.2003.10.003 Kass, 1988, Snakes: active contour models, Internatiaonal Journal of Computer Vision, 1, 321, 10.1007/BF00133570 Klein, 2010, Elastix: a toolbox for intensity-based medical image registration, IEEE Transactions on Medical Imaging, 29, 196, 10.1109/TMI.2009.2035616 Kong, 1989, Digital topology: introduction and survey, CVGIP: Image Understanding, 48, 357 Krissian, K., Garcı´a, S.A., 2009. A minimal cost path and level set evolution approach for carotid bifurcation segmentation. In: Carotid Lumen Segmentation and Stenosis Grading Challenge, MICCAI 2008 Workshop Proceedings, 2009. Ladak, 2001, A semi-automatic technique for measurement of arterial wall from black blood MRI, Medical Physics, 28, 1098, 10.1118/1.1368125 Lee, 2008, Geometry of the carotid bifurcation predicts its exposure to disturbed flow, Stroke, 39, 2341, 10.1161/STROKEAHA.107.510644 Lesage, 2009, A review of 3D vessel lumen segmentation techniques: models, features and extraction schemes, Medical Image Analysis, 13, 819, 10.1016/j.media.2009.07.011 Lorigo, 2001, Curves: curve evolution for vessel segmentation, Medical Image Analysis, 5, 195, 10.1016/S1361-8415(01)00040-8 Manniesing, 2010, Robust CTA lumen segmentation of the atherosclerotic carotid artery bifurcation in a large patient population, Medical Image Analysis, 10.1016/j.media.2010.05.001 Ross, 1999, Atherosclerosis: an inflammatory disease, New England Journal of Medicine, 340, 115, 10.1056/NEJM199901143400207 Schaap, 2009, Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms, Medical Image Analysis, 13, 701, 10.1016/j.media.2009.06.003 Sled, 1998, A nonparametric method for automatic correction of intensity nonuniformity in MRI data, IEEE Transactions on Medical Imaging, 17, 87, 10.1109/42.668698 Smedby, 1996, Tortuosity and atherosclerosis in the femoral artery: what is cause and what is effect?, Annals of Biomedical Engineering, 24, 474, 10.1007/BF02648109 Stensland-Bugge, 2001, Age and sex differences in the relationship between inherited and lifestyle risk factors and subclinical carotid atherosclerosis: the troms study, Atherosclerosis, 154, 437, 10.1016/S0021-9150(00)00486-X Tang, H., van Onkelen, R., van Walsum, T., Reinhard, H., Michiel, S., Tori, F., van den Bouwhuijsen, Q., Witteman, J., van den Lugt, A., van Vliet, L., Niessen, W., 2010. A semi-automatic method for segmentation of the carotid bifurcation and bifurcation angle quantification on Black Blood MRA. In: Jiang, T., Navab, N., Pluim, J., Viergever, M. (Eds.), Lecture Notes in Computer Science, Springer Berlin, Heidelberg, pp. 97–104. Tang, H., van Walsum, T., van Onkelen, R.S., Klein, S., Hameeteman, K., Schaap, M., van den Bouwhuijsen, Q., Witteman, J., van der Lugt, A., van Vliet, L.J., Niessen, W.J., 2011. Multispectral MRI centerline tracking in carotid arteries. In: SPIE: Medical Imaging. Thomas, 2005, Variation in the carotid bifurcation geometry of young versus older adults: implications for geometric risk of atherosclerosis, Stroke, 36, 2450, 10.1161/01.STR.0000185679.62634.0a Underhill, 2010, Mri of carotid atherosclerosis: clinical implications and future directions, Nature Reviews Cardiology, 7, 165, 10.1038/nrcardio.2009.246 Weickert, 1998 Yuan, 1999, Closed contour edge detection of blood vessel lumen and outer wall boundaries in black-blood MR images, Magnetic Resonance Imaging, 17, 257, 10.1016/S0730-725X(98)00162-3