Self-replication: spelling it out in a chemical background

Anet FA (2004) The place of metabolism in the origin of life. Curr Opin Chem Biol 8:654–659 Bachmann PA, Luisi PL, Lang J (1992) Autocatalytic self-replicating micelles as models for prebiotic structures. Nature 357:57–59 Bag BG, Von Kiedrowski G (1996) Templates, autocatalysis and molecular replication. Pure Appl Chem 68:2145–2152 Bartel DP (1999) Re-creating an RNA replicase. In: Gesteland RF, Cech TR, Atkins JF (eds) The RNA world. Cold Spring Harbor Laboratory Press, New York, pp 143–162 Blackmond DG (2004) Asymmetric autocatalysis and its implications for the origin of homochirality. Proc Natl Acad Sci USA 101:5732–5736 Bolm C, Gladysz JA (2003) Introduction: enantioselective catalysis. Chem Rev 103:2761–2762 Burmeister J (1998) Self-replication and autocatalysis. In: Brack A (ed) The molecular origins of life: assembling pieces of the puzzle. Cambridge University Press, Cambridge, pp 295–311 Cech TR (1989) RNA chemistry—ribozyme self-replication. Nature 339:507–508 Coontz R, Fahrenkamp-Uppenbrink J, Szuromi P (2003) Speeding chemistry along—introduction. Science 299:1683–1706 Cousins GRL, Poulsen SA, Sanders JKM (2000) Molecular evolution: dynamic combinatorial libraries, autocatalytic networks and the quest for molecular function. Curr Opin Chem Biol 4:270–279 Eigen M, Schuster P (1979) The hypercycle: a principle of natural self-organization. Springer, Berlin Green R, Szostak JW (1992) Selection of a ribozyme that functions as a superior template in a self-copying reaction. Science 258:1910–1915 Hanczyc MM, Fujikawa SM, Szostak JW (2003) Experimental models of primitive cellular compartments: encapsulation, growth, and division. Science 302:618–622 Inoue T, Orgel LE (1983) A non-enzymatic RNA-polymerase model. Science 219:859–862 Jain SS, Anet FAL, Stahle CJ, Hud NV (2004) Enzymatic behavior by intercalating molecules in a template-directed ligation reaction. Angew Chem Int Ed 43:2004–2008 James KD, Ellington AD (1998) The endogenous synthesis of organic Compound. In: Brack A (ed) The molecular origins of life: assembling pieces of the puzzle. Cambridge University Press, Cambridge, pp 269–294 Joyce GF (1987) Non-enzymatic template-directed synthesis of informational macromolecules. Cold Spring Harbor Symp Quant Biol 52:41–51 Joyce GF (2002) The antiquity of RNA-based evolution. Nature 418:214–221 Joyce GF, Orgel LE (1999) Prospects for understanding the origin of the RNA World. In: Gesteland RF, Cech TR, Atkins JF (eds) The RNA world. Cold Spring Harbor Laboratory Press, New York, pp 49–77 Kauffman S (2000) Investigations. Oxford University Press, Oxford Kozlov IA, Orgel LE (2000) Nonenzymatic template-directed synthesis of RNA from monomers. Mol Biol 34:781–789 Lee DH, Severin K, Ghadiri MR (1997) Autocatalytic networks: the transition from molecular self-replication to molecular ecosystems. Curr Opin Chem Biol 1:491–496 Luisi PL (1998) About various definitions of life. Orig Life Evol Biosph 28:613–622 Ma WT, Yu CW (2006) Intramolecular RNA replicase: possibly the first self-replicating molecule in the RNA world. Orig Life Evol Biosph 36:413–420 Mikami K, Yamanaka M (2003) Symmetry breaking in asymmetric catalysis: racemic catalysis to autocatalysis. Chem Rev 103:3369–3400 Noyori R (2002) Asymmetric catalysis: science and opportunities (Nobel lecture). Angew Chem Int Ed 41:2008–2022 Oberholzer T, Luisi PL (2002) The use of liposomes for constructing cell models. J Biol Phys 28:733–744 Orgel LE (1992) Molecular replication. Nature 358:203–209 Orgel LE (2000) Self-organizing biochemical cycles. Proc Natl Acad Sci USA 97:12503–12507 Orgel LE (2004) Prebiotic chemistry and the origin of the RNA World. Crit Rev Biochem Mol Biol 39:99–123 Paul N, Joyce GF (2003) Self-replication. Curr Biol 13:R46 Pross A (2004) Causation and the origin of Life. Metabolism or replication First? Orig Life Evol Biosph 34:307–321 Rasmussen S, Chen LH, Stadler BMR, Stadler PF (2004) Proto-organism kinetics: evolutionary dynamics of lipid aggregates with genes and metabolism. Orig Life Evol Biosph 34:171–180 Reggia JA, Lohn JD, Chou HH (1998) Self-replicating structures: evolution, emergence, and computation. Artif Life 4:283–302 Robertson A, Sinclair AJ, Philp D (2000) Minimal self-replicating systems. Chem Soc Rev 29:141–152 Ruiz-Mirazo K, Pereto J, Moreno A (2004) A universal definition of life: autonomy and open-ended evolution. Orig Life Evol Biosph 34:323–346 Segre D, Lancet D, Kedem O, Pilpel Y (1998) Graded autocatalysis replication domain (GARD): kinetic analysis of self-replication in mutually catalytic sets. Orig Life Evol Biosph 28:501–514 Shapiro R (2000) A replicator was not involved in the origin of life. IUBMB Life 49:173–176 Sipper M (1998) Fifty years of research on self-replication: an overview. Artif Life 4:237–257 Sipper M, Reggia JA, Emmite D (2001) Go forth and replicate. Sci Am 285:35–43 Strobel SA (2001) Biological catalysis—repopulating the RNA world. Nature 411:1003–1006 Szathmary E (2000) The evolution of replicators. Philos Trans R Soc B Biol Sci 355:1669–1676 Szathmary E (2006) The origin of replicators and reproducers. Philos Trans R Soc B Biol Sci 361:1761–1776 Szathmary E, Smith JM (1997) From replicators to reproducers: the first major transitions leading to life. J Theor Biol 187:555–571 Szostak JW, Bartel DP, Luisi PL (2001) Synthesizing life. Nature 409:387–390 Tjivikua T, Ballester P, Rebek J Jr (1990) A self-replicating system. J Am Chem Soc 112:1249–1250 Todd MH (2002) Asymmetric autocatalysis: product recruitment for the increase in the chiral environment (PRICE). Chem Soc Rev 31:211–222 Trost BM (2004) Asymmetric catalysis: an enabling science. Proc Natl Acad Sci USA 101:5348–5355 Versees W, Loverix S, Vandemeulebroucke A, Geerlings P, Steyaert J (2004) Leaving group activation by aromatic stacking: an alternative to general acid catalysis. J Mol Biol 338:1–6 Wintner EA, Rebek J (1996) Autocatalysis and the generation of self-replicating systems. Acta Chem Scand 50:469–485