Selection and optimization of PCR-based methods for the detection of Histoplasma capsulatum var. capsulatum

Revista Iberoamericana de Micología - Tập 29 - Trang 34-39 - 2012
Ivanete De Lima Sampaio1,2, Ana Karla Lima Freire1,2, Mauricio Morishi Ogusko3, Júlia Ignez Salem3, João Vicente Braga De Souza2,3
1College of Health Sciences, Universidade do Estado do Amazonas, Manaus, AM, Brazil
2Fundação de Medicina Tropical do Estado do Amazonas, Manaus, AM, Brazil
3Instituto Nacional de Pesquisas da Amazônia, Manaus, AM, Brazil

Tài liệu tham khảo

Bernal, 1997, A one-step Candida albicans DNA extraction method using “Chelex® 100 Resin” suitable for DNA amplification (PCR), J Med Mycol, 7, 53 Bialek, 2002, Evaluation of two nested PCR assays for detection of Histoplasma capsulatum DNA in human tissue, J Clin Microbiol, 40, 1644, 10.1128/JCM.40.5.1644-1647.2002 Boleda, 1996, Experimental design: A useful tool for PCR optimization, Biotechniques, 21, 134, 10.2144/96211rr05 Bracca, 2003, Molecular Detection of Histoplasma capsulatum var. capsulatum in Human Clinical Samples, J Clin Microbiol, 41, 1753, 10.1128/JCM.41.4.1753-1755.2003 Buitrago, 2007, Evaluación de una técnica de PCR cuantitativa para el diagnóstico clínico de la histoplasmosis importada, Enferm Infecc Microbiol Clin, 25, 16, 10.1157/13096748 Bullok, 1995, Histoplasma capsulatum, 2340 Carter, 2001, Amplified single-nucleotide polymorphisms and a (GA)n microsatellite marker reveal genetic differentiation between populations of Histoplasma capsulatum from the Americas, Fungal Genet Biol, 34, 37, 10.1006/fgbi.2001.1283 Chemaly, 2001, Rapid diagnosis of Histoplasma capsulatum endocarditis using the AccuProbe on an excised valve, J Clin Microbiol, 39, 2640, 10.1128/JCM.39.7.2640-2641.2001 Colella, 2007, Identificación de Histoplasma capsulatum en muestras clínicas mediante la técnica de PCR en dos rondas, Kasmera, 35, 156 Daar, 1992, Medical management of AIDS patients. Bacterial and fungal infections, Med Clin North Am, 76, 173, 10.1016/S0025-7125(16)30376-5 Einsele, 1997, Detection and identification of fungal pathogens in blood by using molecular probes, J Clin Microbiol, 35, 1353, 10.1128/JCM.35.6.1353-1360.1997 Erlich, 1989 Ferreira, 2001 Goodwin, 1981, Histoplasmosis in normal hosts, Medicine, 60, 231, 10.1097/00005792-198107000-00001 Guedes, 2003, PCR assay for identification of Histoplasma capsulatum based on the nucleotide sequence of the M antigen, J Clin Microbiol, 41, 535, 10.1128/JCM.41.2.535-539.2003 Hall, 2003, Experience with the MicroSeq D2 large subunit ribosomal DNA sequencing kit for identification of commonly encountered, clinically important yeast species, J Clin Microbiol, 41, 5099, 10.1128/JCM.41.11.5099-5102.2003 Hamilton, 1998, Serodiagnosis of histoplasmosis, paracoccidioidomycosis and penicilliosis marneffei; current status and future trends, J Med Mycol, 36, 351, 10.1080/02681219880000571 He, 1994, Effects of thermocyclers and primers on the reproducibility of banding patterns in randomly amplified polymorphic DNA analysis, Mol Cell Probes, 8, 155, 10.1006/mcpr.1994.1021 Imano ECM. Variabilidade genética em Histoplasma capsulatum. [Dissertação] Paraná:Universidade Federal do Paraná, Faculdade de Ciências Biológicas Departamento de Patologia Básica; 2005. Kahi, 2005, Gastrointestinal histoplasmosis, Am J Gastroenterol, 100, 220, 10.1111/j.1572-0241.2005.40823.x Kwon-Chun, 1992 Liu, 1995, Determination of PCR conditions for RAPD analysis in entomopathogenic nematodes (Rhabditida: Heterorhabditidae and Steinernematidae), J Invertebr Pathol, 65, 79, 10.1006/jipa.1995.1013 Mandal, 1989, AIDS and fungal infections, J Infect, 9, 199, 10.1016/S0163-4453(89)90649-X Martagon-Villamil, 2003, Identification of Histoplasma capsulatum from culture extracts by real-time PCR, J Clin Microbiol, 41, 1295, 10.1128/JCM.41.3.1295-1298.2003 Maubon, 2007, Histoplasmosis diagnosis using a polymerase chain reaction method. Application on human samples in French Guiana, South America, Diagn Microbiol Infect Dis, 58, 441, 10.1016/j.diagmicrobio.2007.03.008 Meunier, 1993, Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting, Res Microbiol, 144, 373, 10.1016/0923-2508(93)90194-7 Nogueira, 2004, Desempenho de kits comerciais e protocolos laboratoriais para a extração de DNA genômico bacteriano, Rev Panam Infectol, 6, 35 Reed, 1993, Immunomycology: rapid and specific immunocytochemical identification of fungi in formalin-fixed, paraffin-embedded material, J Histochem Cytochem, 41, 1217, 10.1177/41.8.8331285 Rippon, 1988, Histoplasmosis (Histoplasmosis capsulati), 381 2001 Toranzo, 2009, Diagnóstico molecular de histoplasmosis humana en muestras de sangre entera, Rev Argent Microbiol, 41, 20 Wheat, 2000, Diagnosis of histoplasmosis by antigen detection based upon experience at the histoplasmosis reference laboratory, Diagn Microbiol Infect Dis, 43, 29, 10.1016/S0732-8893(02)00367-X Zarabi, 1992, Diagnosis of systemic histoplasmosis in patients with AIDS, South Med J, 85, 1171, 10.1097/00007611-199212000-00005 Zetzsche H, Klenk HP, Raupach MJ, Knebelsberger T, Gemeinholzer B. Comparison of methods and protocols for routine DNA extraction in the DNA Bank Network. Systematics. Göttingen; 2008 [acessed: 02/02/2010]. Available at: http://www.dnabank-network.org/Publications.php.