Screening of a soil metatranscriptomic library by functional complementation of Saccharomyces cerevisiae mutants

Adams, 1997 Aro, 2005, Transcriptional regulation of plant cell wall degradation by filamentous fungi, FEMS Microbiol Rev, 29, 719, 10.1016/j.femsre.2004.11.006 Ausubel, 1987 Bailly, 2007, Soil eukaryotic functional diversity, a metatranscriptomic approach, ISME J, 1, 632, 10.1038/ismej.2007.68 Buée, 2009, 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity, New Phytol, 184, 449, 10.1111/j.1469-8137.2009.03003.x Courty, 2008, Gene transcription in Lactarius quietus–Quercus petraea ectomycorrhizas from a forest soil, Appl Environ Microbiol, 74, 6598, 10.1128/AEM.00584-08 Daniel, 2005, The metagenomics of soil, Nat Rev Microbiol, 3, 470, 10.1038/nrmicro1160 Dinsdale, 2008, Functional metagenomic profiling of nine biomes, Nature, 452, 629, 10.1038/nature06810 Gietz, 2007, Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method, Nat Protoc, 2, 1, 10.1038/nprot.2007.17 Hall, 1999, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows95/98/NT, Nucleic Acids Symp Ser, 41, 95 Hassett, 2009, Are basidiomycete laccase gene abundance and composition related to reduced lignolytic activity under elevated atmospheric NO3− deposition in a Northern Hardwood Forest?, Microb Ecol, 57, 728, 10.1007/s00248-008-9440-5 Kellner, 2009, Temporal changes in diversity and expression patterns of fungal laccase genes within the organic horizon of a brown forest soil, Soil Biol Biochem, 41, 1380, 10.1016/j.soilbio.2009.03.012 Kellner, 2010, Fungi unearthed: detection of expressed lignocellulolytic and chitinolytic enzymes in forest soil, PLoS ONE, 5, e10971, 10.1371/journal.pone.0010971 Kellner, 2009, Detection of expressed fungal type I polyketide synthase genes in a forest soil, Soil Biol Biochem, 41, 1344, 10.1016/j.soilbio.2009.02.033 Kim, 2009, Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases, Appl Environ Microbiol, 75, 257, 10.1128/AEM.01400-08 Konietzny, 2002, Molecular and catalytic properties of phytate-degrading enzymes (phytases), Int J Food Sci Tech, 37, 791, 10.1046/j.1365-2621.2002.00617.x Lassen, 2001, Expression, gene cloning, and characterization of five novel phytases from four basidiomycete fungi: Peniophora lycii, Agrocybe pediades, a Ceriporia sp., and Trametes pubescens, Appl Environ Microbiol, 67, 4701, 10.1128/AEM.67.10.4701-4707.2001 Legrain M. Etude de la regulation de l’expression du gene PHO5 de Saccharamyces cerevisiae et utilisation de ce gene dans un systeme d’expression. Ph.D. thesis. Belgium: University of Brussels; 1989. Luis, 2005, A molecular method to evaluate basidiomycete laccase gene expression in forest soils, Geoderma, 128, 18, 10.1016/j.geoderma.2004.12.023 Luis, 2004, Diversity of laccase genes from basidiomycetes in a forest soil, Soil Biol Biochem, 36, 1025, 10.1016/j.soilbio.2004.02.017 Messenguy, 1976, Regulation of arginine biosynthesis in Saccharomyces cerevisiae: Isolation of a cis-dominant, constitutive mutant for ornithine carbamoyltransferase synthesis, J Bacteriol, 128, 49, 10.1128/JB.128.1.49-55.1976 Oshima, 1997, The phosphatase system in Saccharomyces cerevisiae, Genes Genet Syst, 72, 323, 10.1266/ggs.72.323 Ridgen, 2008, The histidine phosphatase superfamily: structure and function, Biochem J, 409, 333, 10.1042/BJ20071097 Steele, 2009, Advances in recovery of novel biocatalysts from metagenomes, J Mol Microbiol Biotechnol, 16, 25, 10.1159/000142892 Tamura, 2007, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Mol Biol Evol, 24, 1596, 10.1093/molbev/msm092 Toh-E, 1974, Characterization of a dominant, constitutive mutation, PHOO, for the repressible acid phosphatase synthesis in Saccharomyces cerevisiae, J Bacteriol, 120, 608, 10.1128/JB.120.2.608-617.1974 Toh-E, 1973, Isolation and characterization of acid phosphatase mutants in Saccharomyces cerevisiae, J Bacteriol, 113, 727, 10.1128/JB.113.2.727-738.1973 Tringe, 2005, Metagenomics: DNA sequencing of environmental samples, Nat Rev Genet, 6, 805, 10.1038/nrg1709 Vats, 2004, Production studies and catalytic properties of phytases (myo-inositolhexakisphosphate phosphohydrolases): an overview, Enzyme Microb Technol, 35, 3, 10.1016/j.enzmictec.2004.03.010 Wang, 2007, Cloning, expression, and enzyme characterization of an acid heat-stable phytase from Aspergillus fumigatus WY-2, Curr Microbiol, 55, 65, 10.1007/s00284-006-0613-5 Warnecke, 2009, A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts, J Biotechnol, 142, 91, 10.1016/j.jbiotec.2009.03.022