SSR based association mapping analysis for fatty acid content in coconut flesh and exploration of the elite alleles in Cocos nucifera L

Current Plant Biology - Tập 21 - Trang 100141 - 2020
Lixia Zhou1, Rajesh Yarra1,2, Hongxing Cao1
1Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan, China
2Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China

Tài liệu tham khảo

Nair, 2016, Coconut breeding in India, 2 Daniel, 2005, Morphological variation of fruit in mexican populations of Cocos nucifera L. (Arecaceae) under in situ and ex situ conditions, Genet. Resour. Crop Evol., 52, 421, 10.1007/s10722-005-2253-1 Patel, 1937, Coconut breeding, Proc. Assoc. Econ. Biol., 5, 1 Renan da Silva, 2019, Coconut oil: what do we really know about it so far?, Food Qual. Saf., 3, 61, 10.1093/fqsafe/fyz004 Gopala Krishna, 2010, Coconut oil: chemistry, production and its applications—a review, Ind. Coconut J., 53, 15 Taylor, 2019, Health effects of coconut oil—a narrative review of current evidence, J. Am. Coll. Nutr., 38, 97, 10.1080/07315724.2018.1497562 Zhu, 2018, Better than DEET repellent compounds derived from coconut oil, Sci. Rep., 8, 14053, 10.1038/s41598-018-32373-7 Nie, 2016, Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China, BMC Genomics, 17, 352, 10.1186/s12864-016-2662-x Wang, 2015, New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus, BMC Plant Biol., 15, 91, 10.1186/s12870-015-0475-8 Chen, 2018, Unconditional and conditional QTL analyses of seed fatty acid composition in Brassica napus L, BMC Plant Biol., 18, 49, 10.1186/s12870-018-1268-7 Bao, 2018, Stable, environmental specific and novel QTL identification as well as genetic dissection of fatty acid metabolism in Brassica napus, Front. Plant Sci., 9, 10.3389/fpls.2018.01018 Guan, 2019, Association mapping analysis of fatty acid content in different ecotypic rapeseed using mrMLM, Front. Plant Sci., 9, 1872, 10.3389/fpls.2018.01872 Singh, 2009, Mapping quantitative trait loci (QTLs) for fatty acid composition in an interspecific cross of oil palm, BMC Plant Biol., 9, 114, 10.1186/1471-2229-9-114 Meuwissen, 2010, Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci, Genetics, 155, 421, 10.1093/genetics/155.1.421 Laffargue, 2007, Development of solid-phase extraction and methylation procedures to analyse free fatty acids in lipid-rich seeds, Plant Physiol. Biochem., 45, 250, 10.1016/j.plaphy.2007.01.012 Xia, 2019, Identification and validation of candidate genes involved in fatty acid content in oil palm by genome-wide association analysis, Front. Plant Sci., 10, 1263, 10.3389/fpls.2019.01263 Stewart, 1993, A rapid CTAB DNA isolation technique useful for RAPD finger pritinting and other PCR applications, Bio Tech., 14, 748 Xia, 2014, Development of gene-based simple sequence repeat markers for association analysis in Cocos nucifera, Mol Breed., 34, 525, 10.1007/s11032-014-0055-x Liu, 2005, Power Marker: an integrated analysis environment for genetic marker analysis, Bioinform, 21, 2128, 10.1093/bioinformatics/bti282 Pritchard, 2000, Inference of population structure using multilocus genotype data, Genetics, 155, 945, 10.1093/genetics/155.2.945 Falush, 2003, Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies, Genetics, 164, 1567, 10.1093/genetics/164.4.1567 Qu, 2017, Genome-wide association mapping and identification of candidate genes for fatty acid composition in Brassica napus L. using SNP markers, BMC Genomics, 18, 232, 10.1186/s12864-017-3607-8 Gajardo, 2015, Association mapping of seed quality traits inBrassica napus L. using GWAS and candidate QTL approaches, Mol Breed., 35, 1, 10.1007/s11032-015-0340-3 Breseghello, 2006, Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars, Genetics, 172, 1165, 10.1534/genetics.105.044586 Priolli, 2015, Association mapping of oil content and fatty acid components in soybean, Euphytica, 203, 83, 10.1007/s10681-014-1264-4 Zhao, 2002, QTLs for oil content and their relationships to other agronomic traits in an European×Chinese oilseed rape population, PLoS One, 31, 103 Zhao, 2005, Oil content in a European×Chinese rapeseed population: QTL with additive and epistatic effects and their genotype-environment interactions, Crop Sci., 45, 51, 10.2135/cropsci2005.0051a Wen, 2015, Mapping QTLs controlling beneficial fatty acids based on the embryo and maternal plant genomes in Brassica napus L, J. Am. Oil Chem. Soc., 92, 541, 10.1007/s11746-015-2618-3 Xu, 2017, Association mapping of soluble solid content in melon fruits and exploration of the elite alleles, Acta Hortic. Sinica, 44, 902 Zhao, 2007, S an Arabidopsis example of association mapping in structured samples, PLoS Genet., 3, 10.1371/journal.pgen.0030004