Rotavirus genotyping: keeping up with an evolving population of human rotaviruses
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Adah, 1997, Nigerian rotavirus serotypoe G8 could not be typed by PCR due to nucleotide mutation at the 3’ end of the primer site, Arch Virol, 142, 1881, 10.1007/s007050050206
Adah, 1997, Nigerian rotavirus serotype G8 could not be typed by PCR due to nucleotide mutation at the 3’ end of the primer binding site, Arch Virol, 142, 1881, 10.1007/s007050050206
Banyai, 2003, Detection of human rotavirus serotype G6 in Hungary, Epidemiol Infect, 130, 107, 10.1017/S0950268802007975
Boom, 1990, Rapid and simple method for the purification of nucleic acids, J Clin Microbiol, 28, 495, 10.1128/JCM.28.3.495-503.1990
Coulson, 1996, VP4 and VP7 typing using monoclonal antibodies, Arch Virol Suppl, 12, 113
Cubitt, 2000, Characterisation of rotaviruses from children treated at a London hospital during 1996: emergence of strains G9P2A[6] and G3P2A[6] [in process citation], J Med Virol, 61, 150, 10.1002/(SICI)1096-9071(200005)61:1<150::AID-JMV24>3.0.CO;2-W
Cunliffe, 1999, Rotavirus G and P-types in children with acute diarrhea in Blantyre, Malawi, from 1997 to 1998: predominance of novel P[6]G8 strains, J Med Virol, 57, 308, 10.1002/(SICI)1096-9071(199903)57:3<308::AID-JMV15>3.0.CO;2-B
Cunliffe, 2000, Molecular and serologic characterization of novel serotype G8 human rotavirus strains detected in Blantyre, Malawi, Virology, 274, 309, 10.1006/viro.2000.0456
Das, 1993, Both surface proteins (VP4 and VP7) of an asymptomatic neonatal rotavirus strain (I321) have high levels of sequence identity with the homologous proteins of a serotype 10 bovine rotavirus, Virology, 194, 374, 10.1006/viro.1993.1271
Das, 1993, Both surface proteins (VP4 and VP7) of an asymptomatic neonatal rotavirus strain (I321) have high levels of sequence identity with the homologous proteins of a serotype 10 bovine rotavirus, Virology, 194, 374, 10.1006/viro.1993.1271
Das, 1994, Characterization of rotavirus strains from newborns in New Delhi, India, J Clin Microbiol, 32, 1820, 10.1128/JCM.32.7.1820-1822.1994
Das, 2003, Emergence of novel human group A rotavirus G12 strains in India, J Clin Microbiol, 41, 2760, 10.1128/JCM.41.6.2760-2762.2003
Desselberger U, Iturriza-Gómara M, Gray J. Rotavirus epidemiology and surveillance. Viral Gastroenteritis, Novartis Foundation Symposium. Chichester: Wiley; 2001.
Diwarkarla, 1999, Genetic and antigenic variation of capsid protein VP7 of serotype G1 human rotavirus isolates, J Gen Virol, 80, 341, 10.1099/0022-1317-80-2-341
Dunn, 1993, Serotypic and genotypic characterization of human serotype 10 rotaviruses from asymptomatic neonates, J Clin Microbiol, 31, 165, 10.1128/JCM.31.1.165-169.1993
Gentsch, 1992, Identification of group A rotavirus gene 4 types by polymerase chain reaction, J Clin Microbiol, 30, 1365, 10.1128/JCM.30.6.1365-1373.1992
Gentsch, 1993, Similarity of the VP4 protein of human rotavirus strain 116E to that of the bovine B223 strain, Virology, 194, 424, 10.1006/viro.1993.1280
Gouvea, 1990, Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens, J Clin Microbiol, 28, 276, 10.1128/JCM.28.2.276-282.1990
Gouvea, 1994, Rotavirus serotype G5 associated with diarrhea in Brazilian children, J Clin Microbiol, 32, 1408, 10.1128/JCM.32.5.1408-1409.1994
Gouvea, 1995, Is rotavirus a population of reassortants?, Trends Microbiol, 3, 159, 10.1016/S0966-842X(00)88908-8
Gouvea, 1999, Identification of two lineages (WA-like and F45-like) within the major rotavirus genotype P[8], Virus Res, 59, 141, 10.1016/S0168-1702(98)00124-5
Gulati, 1999, Relative frequencies of G and P-types among rotaviruses from Indian diarrheic cow and buffalo calves, J Clin Microbiol, 37, 2074, 10.1128/JCM.37.6.2074-2076.1999
Griffin, 2002, Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses, Virology, 294, 256, 10.1006/viro.2001.1333
Iturriza-Gómara, 1999, Comparison of specific and random priming in the reverse transcriptase polymerase chain reaction for genotyping group A rotaviruses, J Virol Methods, 78, 93, 10.1016/S0166-0934(98)00168-2
Iturriza-Gómara, 2000, Characterisation of rotavirus G9 strains isolated in the UK between 1995 and 1998, J Med Virol, 61, 510, 10.1002/1096-9071(200008)61:4<510::AID-JMV15>3.0.CO;2-Q
Iturriza-Gómara, 1998, Molecular epidemiology of human group A rotavirus infections in the UK between 1995 and 1998, J Clin Microbiol, 38, 4094
Iturriza-Gómara, 2000, Diversity within the VP4 gene of rotavirus P[8] strains: implications for reverse transcription-PCR genotyping, J Clin Microbiol, 38, 898, 10.1128/JCM.38.2.898-901.2000
Iturriza-Gómara, 2001, Amino acid substitution within the VP7 protein of G2 rotavirus strains associated with failure to serotype, J Clin Microbiol, 39, 3796, 10.1128/JCM.39.10.3796-3798.2001
Iturriza-Gómara, 1999, Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999, J Virol, 75, 3696, 10.1128/JVI.75.8.3696-3705.2001
Iturriza-Gómara, M, Desselberger, U, Gray, J. Molecular epidemiology of rotaviruses: genetic mechanisms associated with diversity. In: Desselberger, U, Gray, J, editors. Viral Gastroenteritis. Amsterdam: Elsevier; 2003. p. 317–344.
Iturriza-Gómara M, Kang G, Mammen A, Jana AK, Abraham M, Desselberger U, Brown D, Gray J. Characterisation of G10P[11] rotaviruses causing acute gastroenteritis in neonates and infants in Vellore, India. J Clin Microbiol 2004; 2541–2547.
Kirkwood, 2001, Genetic and antigenic characterization of rotavirus serotype G9 strains isolated in Australia between 1997 and 2001, J Clin Microbiol, 41, 3649, 10.1128/JCM.41.8.3649-3654.2003
Laird, 2001, Characterization of serotype G9 rotavirus strains isolated in the United States and India from 1993 to 2001, J Clin Microbiol, 41, 3100, 10.1128/JCM.41.7.3100-3111.2003
Martella, 2004, Nucleotide variation in the VP7 gene affects PCR genotyping of G9 rotaviruses identified in Italy, J Med Virol, 72, 143, 10.1002/jmv.10563
Maunula, 1998, Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9, J Gen Virol, 79, 321, 10.1099/0022-1317-79-2-321
McCarthy, 2003, Project seeks to “fast track” rotavirus vaccine, Lancet, 361, 582, 10.1016/S0140-6736(03)12549-4
Parashar, 2003, Global illness and deaths caused by rotavirus disease in children, Emerg Infect Dis, 9, 565, 10.3201/eid0905.020562
Pongsuwanna, 2002, Detection of a human rotavirus with G12 and P[9] specificity in Thailand, J Clin Microbiol, 40, 1390, 10.1128/JCM.40.4.1390-1394.2002
Raj, 1992, Comparisons of rotavirus VP7-typing monoclonal antibodies by competition binding assay, J Clin Microbiol, 30, 704, 10.1128/JCM.30.3.704-711.1992
Santos, 2003, VP7 gene polymorphism of serotype G9 rotavirus strains and its impact on G genotype determination by PCR, Virus Res, 93, 127, 10.1016/S0168-1702(02)00318-0
Steele, 2003, Rotavirus strains circulating in Africa during 1996–1999: emergence of G9 strains and P[6] strains, Vaccine, 21, 361, 10.1016/S0264-410X(02)00616-3
Varshney, 2002, Prevalence of, and antigenic variation in, serotype G10 rotaviruses and detection of serotype G3 strains in diarrheic calves: implications for the origin of G10P11 or P11 type reassortant asymptomatic strains in newborn children in India, Arch Virol, 147, 143, 10.1007/s705-002-8308-z