Root microbiomes of seedless vascular plants correlate with plant relatedness and spatial proximity

Badri, 2009, Regulation and function of root exudates, Plant Cell Environ., 32, 666, 10.1111/j.1365-3040.2009.01926.x Benucci, 2020, Evidence of co-evolutionary history of early diverging Lycopodiaceae plants with fungi, Front. Microbiol., 10, 2944, 10.3389/fmicb.2019.02944 Berg, 2009, Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere, FEMS Microbiol. Ecol., 68, 1, 10.1111/j.1574-6941.2009.00654.x Bolyen, 2019, Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2, Nat. Biotechnol., 37, 852, 10.1038/s41587-019-0209-9 Brencic, 2005, Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria, Microbiol. Mol. Biol. Rev., 69, 155, 10.1128/MMBR.69.1.155-194.2005 Delgado-Baquerizo, 2018, A global atlas of the dominant bacteria found in soil, Science, 359, 320, 10.1126/science.aap9516 Dempsey, 2020, The relative importance of photodegradation and biodegradation of terrestrially derived dissolved organic carbon across four lakes of differing trophic status, Biogeosciences, 17, 6327, 10.5194/bg-17-6327-2020 Goslee, 2007, The ecodist package for dissimilarity-based analysis of ecological data, J. Stat. Software, 22, 1 Hartmann, 2009, Plant-driven selection of microbes, Plant Soil, 321, 235, 10.1007/s11104-008-9814-y Hassani, 2018, Microbial interactions within the plant holobiont, BMC Microbiome, 6, 58, 10.1186/s40168-018-0445-0 Heiri, 2001, Loss on ignition as a method for estimating organic and carbonate content in sediments: reproducibility and comparability of results, J. Paleolimnol., 25, 101, 10.1023/A:1008119611481 Khilyas, 2019, Microbial diversity and mineral composition of weathered serpentine rock of the Khalilovsky massif, PLoS One, 14, 10.1371/journal.pone.0225929 Kumar, 2018, MEGA X: molecular evolutionary genetics analysis across computing platforms, Mol. Biol. Evol., 35, 1547, 10.1093/molbev/msy096 McColl, 1974, Self-purification of small freshwater streams: phosphate, nitrate, and ammonia removal, N. Z. J. Mar. Freshw. Res., 8, 375, 10.1080/00288330.1974.9515512 Mitter, 2017, Bacterial root microbiome of plants growing in oil sands reclamation covers, Front. Microbiol., 8, 849, 10.3389/fmicb.2017.00849 2021 Parks, 2014, STAMP: statistical analysis of taxonomic and functional profiles, Bioinformatics, 30, 3123, 10.1093/bioinformatics/btu494 Ritz, 2004, Spatial structure in soil chemical and microbiological properties in an upland grassland, FEMS Microbiol. Ecol., 49, 191, 10.1016/j.femsec.2004.03.005 Sandoz, 2020, Biotic and abiotic factors shape arbuscular mycorrhizal fungal communities associated with the roots of the widespread fern Botrychium lunaria (Ophioglossaceae), Environ. Microbiol. Rep., 12, 342, 10.1111/1758-2229.12840 Yeoh, 2017, Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence, Nat. Commun., 8, 215, 10.1038/s41467-017-00262-8