Rivers may constitute an overlooked avenue of dispersal for terrestrial fungi

Fungal Ecology - Tập 32 - Trang 72-79 - 2018
Erick S. LeBrun1, D.Lee Taylor2, Ryan S. King1, Jeffrey A. Back1, Sanghoon Kang1
1Center for Reservoir and Aquatic Systems Research, Department of Biology, Baylor University, Waco, TX 76798-7388, USA
2Department of Biology, The University of New Mexico, Albuquerque, NM 87131-0001, USA

Tài liệu tham khảo

Adams, 2013, Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances, ISME J., 7, 1262, 10.1038/ismej.2013.28 Allan, 2004, Landscapes and Riverscapes: the influence of land use on stream ecosystems, Annu. Rev. Ecol. Evol. Systemat., 35, 257, 10.1146/annurev.ecolsys.35.120202.110122 Amend, 2010, Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics, Proc. Natl. Acad. Sci., 107, 13748, 10.1073/pnas.1000454107 Anderson, 2002, Harmful algal blooms and eutrophication: nutrient sources, composition, and consequences, Estuaries, 25, 704, 10.1007/BF02804901 APHA, 1998 Aronesty, 2013, Comparison of sequencing utility programs, Open Bioinforma, 7, 1, 10.2174/1875036201307010001 Baker, 2010, A new method for detecting and interpreting biodiversity and ecological community thresholds, Methods Ecol. Evol., 1, 25, 10.1111/j.2041-210X.2009.00007.x Baker, 2015 Bennett, 2001, Human impact on erodable phosphorus and eutrophication: a global perspective increasing accumulation of phosphorus in soil threatens rivers, lakes, and coastal oceans with eutrophication, BioScience, 51, 227, 10.1641/0006-3568(2001)051[0227:HIOEPA]2.0.CO;2 Bermingham, 1986, Molecular zoogeography of freshwater fishes in the southeastern United States, Genetics, 113, 939, 10.1093/genetics/113.4.939 Bernatchez, 1998, Comparative phylogeography of nearctic and palearctic fishes, Mol. Ecol., 7, 431, 10.1046/j.1365-294x.1998.00319.x Bilotta, 2008, Understanding the influence of suspended solids on water quality and aquatic biota, Water Res., 42, 2849, 10.1016/j.watres.2008.03.018 Bolan, 1991, A critical review on the role of mycorrhizal fungi in the uptake of phosphorus by plants, Plant Soil, 134, 189, 10.1007/BF00012037 Bormann, 2012 Brown, 2002, Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease, Science, 297, 537, 10.1126/science.1072678 Bunn, 1997, Dispersal and recruitment in streams: evidence from genetic studies, J. North Am. Benthol. Soc., 16, 338, 10.2307/1468022 Butts, 2008, Network: A Package for Managing Relational Data in R, J. Stat. Software, 24, 1 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303 Carpenter, 1998, Nonpoint pollution of surface waters with phosphorus and nitrogen, Ecol. Appl., 8, 559, 10.1890/1051-0761(1998)008[0559:NPOSWW]2.0.CO;2 Charney, 2012 Christensen, 1989, A view of fungal Ecology, Mycologia, 81, 1, 10.1080/00275514.1989.12025620 Cline, 2014, Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence, Environ. Microbiol., 16, 1538, 10.1111/1462-2920.12281 Cook, 2017, Freshwater eutrophication drives sharp reductions in temporal beta diversity, Ecology Csardi, 2006, The igraph software package for complex network research, InterJournal Complex Syst, 1695, 1 Dufrêne, 1997, Species assemblages and indicator species: the need for a flexible asymmetrical approach, Ecol. Monogr., 67, 345 Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461 ESRI, 2011 Fabre, 1998, Aquatic hyphomycetes in three rivers of southwestern France. III. Relationships between communities spatial and temporal dynamics, Canadian journal of botany, 76, 115 Fabre, 1998, Aquatic hyphomycetes in three rivers of southwestern France. II. Spatial and temporal differences between species, Can. J. Bot., 76, 107 Fabre, 1998, Aquatic hyphomycetes in three rivers of southwestern France. I. Spatial and temporal changes in conidial concentration, species richness, and community diversity, Can. J. Bot., 76, 99 Frissell, 1986, A hierarchical framework for stream habitat classification: viewing streams in a watershed context, Environ. Manage, 10, 199, 10.1007/BF01867358 Gessner, 1997, Fungal biomass, production and sporulation associated with particulate organic matter in streams, Limnética, 13, 33, 10.23818/limn.13.14 Gorniak, 2013, Fungi biomass in lowland rivers of north-eastern Poland: effects of habitat conditions and nutrient concentrations, Pol. J. Ecol., 61, 749 Green, 2001, 1997 Grinn-Gofroń, 2015, Effects of meteorological factors on the composition of selected fungal spores in the air, Aerobiologia, 31, 63, 10.1007/s10453-014-9347-1 Haggard, 2010, Phosphorus concentrations, loads, and sources within the Illinois River drainage area, northwest Arkansas, 1997–2008, J. Environ. Qual., 39, 2113, 10.2134/jeq2010.0049 Haggard, 2006, Sediment phosphorus release at a small impoundment on the Illinois River, Arkansas and Oklahoma, USA. Ecol. Eng, 28, 280, 10.1016/j.ecoleng.2006.07.013 Hart, 2004, Phosphorus runoff from agricultural land and direct fertilizer effects, J. Environ. Qual., 33, 1954, 10.2134/jeq2004.1954 van Der Heijden, 2008, The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems, Ecol. Lett., 11, 296, 10.1111/j.1461-0248.2007.01139.x Hulvey, 2010, Co-occurrence and genotypic distribution of Phytophthora species recovered from watersheds and plant nurseries of eastern Tennessee, Mycologia, 102, 1127, 10.3852/09-221 Ingold, 1942, Aquatic hyphomycetes of decaying alder leaves, Trans. Br. Mycol. Soc., 25, 10.1016/S0007-1536(42)80001-7 Jackson, 1995, PROTEST: a PROcrustean randomization TEST of community environment concordance, Ecoscience, 2, 297, 10.1080/11956860.1995.11682297 Jost, 2007, Partitioning diversity into independent alpha and beta components, Ecology, 88, 2427, 10.1890/06-1736.1 King, 2005, Spatial considerations for linking watershed land cover to ecological indicators in streams, Ecol. Appl., 15, 137, 10.1890/04-0481 Laliberté, 2015, Phosphorus limitation, soil-borne pathogens and the coexistence of plant species in hyperdiverse forests and shrublands, New Phytol., 206, 507, 10.1111/nph.13203 Langille, 2013, Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences, Nat. Biotechnol., 31, 814, 10.1038/nbt.2676 LeBrun, 2017, Microbial community structure and function decoupling across a phosphorus gradient in streams, Microb. Ecol., 1 Li, 2016 Maguire, 1963, The passive dispersal of small aquatic organisms and their colonization of isolated bodies of water, Ecol. Monogr., 33, 161, 10.2307/1948560 Marra, 2011, Practical variable selection for generalized additive models, Comput. Stat. Data Anal., 55, 2372, 10.1016/j.csda.2011.02.004 McMurdie, 2013, phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data, PLos One, 8, 10.1371/journal.pone.0061217 Miller, 2002, Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains, U.S.A. Freshw. Biol, 47, 1660, 10.1046/j.1365-2427.2002.00911.x Nguyen, 2016, FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild, Fungal Ecol, 20, 241, 10.1016/j.funeco.2015.06.006 Nikolcheva, 2005, Seasonal and substrate preferences of fungi colonizing leaves in streams: traditional versus molecular evidence, Environ. Microbiol., 7, 270, 10.1111/j.1462-2920.2004.00709.x Oksanen, 2016 Pashley, 2012, DNA analysis of outdoor air reveals a high degree of fungal diversity, temporal variability, and genera not seen by spore morphology, Fungal Biol., 116, 214, 10.1016/j.funbio.2011.11.004 Peay, 2014, Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant–fungal interactions, New Phytol., 204, 180, 10.1111/nph.12906 Peay, 2010, Not every fungus is everywhere: scaling to the biogeography of fungal–plant interactions across roots, shoots and ecosystems, New Phytol., 185, 878, 10.1111/j.1469-8137.2009.03158.x Peay, 2012, Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules, Mol. Ecol., 21, 4122, 10.1111/j.1365-294X.2012.05666.x Pellegrino, 2005, Phylogeography and species limits in the Gymnodactylus darwinii complex (Gekkonidae, Squamata): genetic structure coincides with river systems in the Brazilian Atlantic Forest, Biol. J. Linn. Soc., 85, 13, 10.1111/j.1095-8312.2005.00472.x Petersen, 2004, Dispersal of adult aquatic insects in catchments of differing land use, J. Appl. Ecol., 41, 934, 10.1111/j.0021-8901.2004.00942.x R Core Team, 2015 Roberts, 2013 Santamaría, 2002, Why are most aquatic plants widely distributed? Dispersal, clonal growth and small-scale heterogeneity in a stressful environment, Acta Oecol., 23, 137, 10.1016/S1146-609X(02)01146-3 Savage, 2012, Seasonal and diurnal patterns of spore release can significantly affect the proportion of spores expected to undergo long-distance dispersal, Microb. Ecol., 63, 578, 10.1007/s00248-011-9949-x Schachtman, 1998, Phosphorus uptake by plants: from soil to cell, Plant Physiol., 116, 447, 10.1104/pp.116.2.447 Schindler, 1977, Evolution of phosphorus limitation in lakes, Science, 195, 260, 10.1126/science.195.4275.260 Schlesinger, 1981, Transport of organic carbon in the world's rivers, Tellus, 33, 172, 10.3402/tellusa.v33i2.10706 Smouse, 1986, Multiple regression and correlation extensions of the Mantel test of matrix correspondence, Syst. Zool., 35, 627, 10.2307/2413122 Søndergaard, 2007, Anthropogenic impacts on lake and stream ecosystems, and approaches to restoration, J. Appl. Ecol., 44, 1089, 10.1111/j.1365-2664.2007.01426.x Sridhar, 1994, Viability of aquatic hyphomycete conidia in foam, Can. J. Bot., 72, 106, 10.1139/b94-015 Sridhar, 2008, Fungal biomass and diversity in sediments and on leaf litter in heavy metal contaminated waters of Central Germany, Fundam. Appl. Limnol. Für Hydrobiol., 171, 63, 10.1127/1863-9135/2008/0171-0063 Suberkropp, 1976, Fungi and bacteria associated with leaves during processing in a woodland stream, Ecology, 57, 707, 10.2307/1936184 Suberkropp, 1992, Aquatic hyphomycetes in insecticide-treated and untreated streams, J. North Am. Benthol. Soc., 11, 165, 10.2307/1467382 Sutton, 2009, Stream monitoring for detection of Phytophthora ramorum in Oregon tanoak forests, Plant Dis., 93, 1182, 10.1094/PDIS-93-11-1182 Taylor, 1999, Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities, Mol. Ecol., 8, 1837, 10.1046/j.1365-294x.1999.00773.x Taylor, 2016, Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing, Appl. Environ. Microbiol., 82, 7217, 10.1128/AEM.02576-16 Thomas, 1991, A dynamic model of fungal spora in a freshwater stream, Mycol. Res., 95, 184, 10.1016/S0953-7562(09)81009-5 Vanschoenwinkel, 2008, Relative importance of different dispersal vectors for small aquatic invertebrates in a rock pool metacommunity, Ecography, 31, 567, 10.1111/j.0906-7590.2008.05442.x Warnes, 2016 Waters, 1995 Wickham, 2006 Wood, 2001, mgcv: GAMs and generalized ridge regression for R, R. News, 1, 20