Responses of hydrochemical parameters, community structures, and microbial activities to the natural biodegradation of petroleum hydrocarbons in a groundwater–soil environment

Allan SE, Smith BW, Anderson KA (2012) Impact of the deepwater horizon oil spill on bioavailable polycyclic aromatic hydrocarbons in Gulf of Mexico coastal waters. Environ Sci Technol 46:2033–2039

Amman RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microb Mol Biol Rev 59:143–169

Appelo CAJ, Postma D (2005) Geochemistry, groundwater and pollution. Taylor & Francis Group, Florida

Arroyo P, Miera LESD, Ansola G (2015) Influence of environmental variables on the structure and composition of soil bacterial communities in natural and constructed wetlands. Sci Total Environ 506–507:380–390

ATSDR (Agency for toxic substance and disease registry) (1999) Toxicological profile for total petroleum hydrocarbons (TPH). Department of Health and Human Services, Public Health Service, Atlanta

Balba MT, Al-Daher R, Al-Awadhi N, Chino H, Tsuji H (1998) Bioremediation of oil-contaminated desert soil: the Kuwaiti experience. Environ Int 24(1–2):163–173

Boopathy R (2000) Factors limiting bioremediation technologies. Bioresour Technol 74:63–67

Cauwenberghe JV, Michiels J, Honnay O (2015) Effects of local environmental variables and geographical location on the genetic diversity and composition of Rhizobium leguminosarum nodulating Vicia cracca populations. Soil Biol Biochem 90:71–79

De Fede KL, Sexstone AJ (2001) Differential response of size-fractionated soil bacteria in BIOLOG microtitre plates. Soil Biol Biochem 33:1547–1554

Devereux R, He SH, Doyle CL, Orkland S, Stahl DA, LeGall J, Whitman WB (1990) Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J Bacteriol 172(7):3609–3619

Fingas M (2011) Oil spill science and technology: prevention, response, and clean up. Elsevier, Burlington

Firby MF, Law RJ (2008) Oil spill treatment products approval: the UK approach and potential application to the Gulf region. Mar Pollut Bull 56:1243–1247

Fry NK, Warwick S, Saunders NA, Embley TM (1991) The use of 16S rRNA analyses to investigate the phylogeny of the family Legionellaceae. J Gen Microbiol 137(5):1215–1222

González JJ, Viñas L, Franco MA, Fumega J, Soriano JA, Grueiro G, Muniategui S, López-Mahía P, Prada D, Bayona JM, Alzaga R, Albaigés J (2006) Spatial and temporal distribution of dissolved/dispersed aromatic hydrocarbons in seawater in the area affected by the prestige oil spill. Mar Pollut Bull 53:250–259

Graland JL (1996) Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol Biochem 28:213–221

Grishchenkov VK, Townsedn RT, McDonald TJ, Autenrieth RL, Bonner S, Boronin AM (2000) Degradation of petroleum hydrocarbons by facultative anaerobic bacteria under aerobic and anaerobic conditions. Process Biochem 35:889–896

Gulez G, de los Reyes III FL (2009) Multiple approaches to assess filamentous bacterial growth in activated sludge under different carbon source conditions. J Appl Microbiol 106:682–691

Head IM, Jones DM, Röling WFM (2006) Marine microorganisms make a meal of oil. Nat Rev Microbiol 4:173–182

Jansson JK, Bjöklöf K, Elvang AM, Jørgensen KS (2000) Biomarkers for monitoring efficacy of bioremediation by microbial inoculants. Environ Pollut 107:217–223

Kucera CL, Kirham DR (1979) Microbial floristics of a managed tallgrass prairie. Am Midl Nat 101:13

Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54(3):305–315

Lin Q, Mendelssohn IA (2012) Impacts and recovery of the deepwater horizon oil spill on vegetation structure and function of coastal salt marshes in the northern Gulf of Mexico. Environ Sci Technol 46:3737–3743

Lu Y (2013) Mechanism of natural biodegradation in petroleum contaminated shallow groundwater system. PhD Dissertation of Jilin University

Luan TG, Yu KSH, Zhong Y, Zhou HW, Lan CY, Tam NFY (2006) Study of metabolites from the degradation of polycyclic aromatic hydrocarbons (PAHs) by bacterial consortium enriched from mangrove sediments. Chemosphere 65(11):2289–2296

Ma J, Nossa CW, Xiu ZM, Rixey WG, Alvarez PJJ (2013) Adaptive microbial population shifts in response to a continuous ethanol blend release increases biodegradation potential. Environ Pollut 178:419–425

Malik S, Beer M, Megharaj M, Naidu R (2008) The use of molecular techniques to characterize the microbial communities in contaminated soil and water. Environ Int 34:265–276

Marshall AG, Rogers RP (2003) Petroleomics: the next grand challenge for chemical analysis. Acc Chem Res 37:53–59

Muyzer G, Hottentraeger S, Teske A, Wawer C (1996) Denaturing gradient gel electrophoresis of PCR amplified 16 S rDNA—a new molecular approach to analyze the genetic diversity of mixed microbial communities. In: Molecular microbial ecology manual. Kluwer, Dordrecht

Norman RP (1997) A molecular view of microbial diversity and the biosphere. Science 276(5313):734–740

Nyer EK, Skladany GJ (1989) Relating the physical and chemical properties of petroleum hydrocarbons to soil and aquifer remediation. Ground Water Monit Rev 9(1):54–59

Pennanen T, Frostegard A, Fritze H, Baath E (1996) Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Appl Environ Microbial 62:420–428

Pinholt YSS, Kjoller A (1979) Microbial changes during oil decomposition in soil. Holarctic Ecol 2:195–200

Röling WFM, Head IM, Larter SR (2003) The microbiology of hydrocarbon degradation in subsurface petroleum reservoirs: perspectives and prospects. Res Microbiol 154(5):321–328

Röling WFM, Milner MG, Jones DM, Lee K, Daniel F, Swannell RJP, Head IM (2002) Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl Environ Microbial 68:5537–5548

Röling WFM, Head IM, Larter SR (2004a) The microbiology of hydrocarbon degradation in subsurface petroleum reservoirs: perspectives and prospects. Res Microbiol 154:321–328

Röling WFM, Milner MG, Jones DM, Fratepietro F, Swannell RPJ, Daniel F, Head IM (2004b) Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Appl Environ Microbial 70(5):2603–2613

Schnoor JL (2010) The gulf oil spill. Environ Sci Technol 44:4833

Seymour RJ, Geyer RA (1992) Fates and effects of oil spills. Annu Rev Energy Environ 17:261–283

U.S. Epa (United States Environmental Protection Agency) (1999) Use of monitored natural attenuation at superfund, RCRA corrective action, and underground storage tank sites. EPA, Washington

Vandermeulen JH, Ross CW (1995) Oil spill response in freshwater: assessment of the impact of cleanup as a management tool. J Environ Manag 44:297–308

Wiedemeier TH, Rifai HS, Newell CJ, Wilson JT (1999) Natural attenuation of fuels and chlorinated solvents in the subsurface. Wiley, Hoboken

Zhang D (2004) Environmental assessment theory of leakage, fire and explosion accidents occurred at large-size oil storage tank. PhD Dissertation of Capital University of Economics and Business

Zhang P, Sun RJ, Ge LK, Wang Z, Chen H, Yao ZW (2014) Compensation for the damages arising from oil spill incidents: legislation infrastructure and characteristics of the Chinese regime. Estuar Coast Shelf Sci 140:76–82

Zheng ZX (2011) Estimation of the background (threshold) total petroleum hydrocarbon concentration and analysis of the characteristics of petroleum hydrocarbon contamination in a certain oilfield in Northeast China. Hydrogeol Eng Geol 38(118–124):138 (in Chinese)