Response of the rhizosphere microbial community to fine root and soil parameters following Robinia pseudoacacia L. afforestation

Applied Soil Ecology - Tập 132 - Trang 11-19 - 2018
Jinliang Liu1,2,3, Vu Ngoc Ha2, Zhen Shen2, Peng Dang2,3, Hailan Zhu2, Fei Zhao4, Zhong Zhao1,2,3
1State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Forestry, Northwest A&F University, Yangling 712100, PR China
2Key Comprehensive Laboratory of Forestry, Shaanxi Province, College of Forestry, Northwest A&F University, Yangling 712100, PR China
3Key Laboratory of Silviculture on the Loess Plateau State Forestry Administration, College of Forestry, Northwest A&F University, Yangling 712100, PR China
4Beijing Agricultural Technology Extension Station, Beijing 100029, PR China

Tài liệu tham khảo

Aira, 2010, Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities, Soil Biol. Biochem., 42, 2276, 10.1016/j.soilbio.2010.08.029 Bakker, 2013, The rhizosphere revisited: root microbiomics, Front. Plant Sci, 4, 10.3389/fpls.2013.00165 Beauregard, 2010, Long-term phosphorus fertilization impacts soil fungal and bacterial diversity but not AM fungal community in alfalfa, Microb. Ecol., 59, 379, 10.1007/s00248-009-9583-z Berendsen, 2012, The rhizosphere microbiome and plant health, Trends Plant Sci., 17, 478, 10.1016/j.tplants.2012.04.001 Berg, 2009, Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere, FEMS Microbiol. Ecol., 68, 1, 10.1111/j.1574-6941.2009.00654.x Bokulich, 2013, Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities, Appl. Environ. Microb., 79, 2519, 10.1128/AEM.03870-12 Buckley, 2006, Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity, Appl. Environ. Microb., 72, 4522, 10.1128/AEM.00149-06 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303 Cavaglieri, 2009, Rhizosphere microbial community structure at different maize plant growth stages and root locations, Microbiol. Res., 164, 391, 10.1016/j.micres.2007.03.006 Chaparro, 2014, Rhizosphere microbiome assemblage is affected by plant development, Isme J. Multidisciplinary J. Microbial Ecol., 8, 790 Compant, 2010, Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization, Soil Biol Biochem., 42, 669, 10.1016/j.soilbio.2009.11.024 De Marco, 2013, Impact of the invasive tree black locust on soil properties of Mediterranean stone pine-holm oak forests, Plant Soil, 372, 473, 10.1007/s11104-013-1753-6 DeBruyn, 2011, Global biogeography and quantitative seasonal dynamics of Gemmatimonadetes in soil, Appl. Environ. Microb., 77, 6295, 10.1128/AEM.05005-11 Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461 Fierer, 2007, Toward an ecological classification of soil bacteria, Ecology, 88, 1354, 10.1890/05-1839 Gleixner, 2013, Soil organic matter dynamics: a biological perspective derived from the use of compound-specific isotopes studies, Ecol. Res., 28, 683, 10.1007/s11284-012-1022-9 Grayston, 1998, Selective influence of plant species on microbial diversity in the rhizosphere, Soil Biol. Biochem., 30, 369, 10.1016/S0038-0717(97)00124-7 Hendricks, 1993, Assessing the role of fine roots in carbon and nutrient cycling, Trends Ecol. Evol., 8, 174, 10.1016/0169-5347(93)90143-D Houlden, 2008, Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops, Fems Microbiol. Ecol., 65, 193, 10.1111/j.1574-6941.2008.00535.x Jackson, 1997, A global budget for fine root biomass, surface area, and nutrient contents, Proc. Natl. Acad. Sci., 94, 7362, 10.1073/pnas.94.14.7362 Jiao, 2012, Assessing the ecological success of restoration by afforestation on the Chinese Loess Plateau, Restor. Ecol., 20, 240, 10.1111/j.1526-100X.2010.00756.x Lin, 2011, Fine root decomposition of evergreen broadleaved and coniferous tree species in mid-subtropical China: dynamics of dry mass, nutrient and organic fractions, Plant Soil, 338, 311, 10.1007/s11104-010-0547-3 Lindahl, 2015, Ectomycorrhizal fungi – potential organic matter decomposers, yet not saprotrophs, New Phytol., 205, 1443, 10.1111/nph.13201 Liu, 1991, Mathematical model of the relationship between nitrogen-fixation by black locust and soil conditions, Soil Biol. Biochem., 23, 1, 10.1016/0038-0717(91)90155-D Liu, 2018, Response of soil microbial community dynamics to Robinia pseudoacacia L. afforestation in the loess plateau: a chronosequence approach, Plant Soil, 423, 327, 10.1007/s11104-017-3516-2 Lundberg, 2012, Defining the core Arabidopsis thaliana root microbiome, Nature, 488, 86-+, 10.1038/nature11237 Marschner, 2002, Spatial and temporal dynamics of the microbial community structure in the rhizosphere of cluster roots of white lupin (Lupinus albus L.), Plant Soil, 246, 167, 10.1023/A:1020663909890 Mendes, 2014, Taxonomical and functional microbial community selection in soybean rhizosphere, ISME J., 8, 1577, 10.1038/ismej.2014.17 Michalet, 2013, Phytochemical analysis of mature tree root exudates in situ and their role in shaping soil microbial communities in relation to tree N-acquisition strategy, Plant Physiol. Biochem., 72, 169, 10.1016/j.plaphy.2013.05.003 Min, 2017, Changes in arbuscular mycorrhizal fungal attributes along a chronosequence of black locust (Robinia pseudoacacia) plantations can be attributed to the plantation-induced variation in soil properties, Sci Total Environ., 599–600, 273 Mori, 2014, Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes, DNA Res., 21, 217, 10.1093/dnares/dst052 Muller, 2017, Himalayan treeline soil and foliar C:N: P stoichiometry indicate nutrient shortage with elevation, Geoderma, 291, 21, 10.1016/j.geoderma.2016.12.015 Naether, 2012, Environmental factors affect acidobacterial communities below the subgroup level in grassland and forest soils, Appl. Environ. Microb., 78, 7398, 10.1128/AEM.01325-12 Orwin, 2018, A comparison of the ability of PLFA and 16S rRNA gene metabarcoding to resolve soil community change and predict ecosystem functions, Soil Biol. Biochem., 117, 27, 10.1016/j.soilbio.2017.10.036 Page, 1982 Philippot, 2013, Going back to the roots: the microbial ecology of the rhizosphere, Nat. Rev. Microbiol., 11, 789, 10.1038/nrmicro3109 Qiu, 2010, Effects of black locust (Robinia pseudoacacia) on soil properties in the loessial gully region of the Loess Plateau, China, Plant Soil, 332, 207, 10.1007/s11104-010-0286-5 Read, 2010, Mycorrhizas and nutrient cycling in ecosystems – a journey towards relevance? [Review], New Phytol., 157, 475, 10.1046/j.1469-8137.2003.00704.x Ren, 2017, Response of microbial diversity to C:N: P stoichiometry in fine root and microbial biomass following afforestation, Biol. Fert. Soils, 53, 457, 10.1007/s00374-017-1197-x Smalla, 2001, Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed, Appl. Environ. Microb., 67, 4742, 10.1128/AEM.67.10.4742-4751.2001 Spohn, 2017, Turnover of carbon and phosphorus in the microbial biomass depending on phosphorus availability, Soil Biol. Biochem., 113, 53, 10.1016/j.soilbio.2017.05.017 Svenningsen, 2018, Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota, ISME J., 10.1038/s41396-018-0059-3 Tedersoo, 2014, Global diversity and geography of soil fungi, Science, 346, 1, 10.1126/science.1256688 Vasconcellos, 2010, Isolation and screening for plant growth-promoting (PGP) actinobacteria from Araucaria angustifolia rhizosphere soil, Sci. Agr., 67, 743, 10.1590/S0103-90162010000600019 Vitkova, 2015, Black locust-Successful invader of a wide range of soil conditions, Sci. Total Environ., 505, 315, 10.1016/j.scitotenv.2014.09.104 Waring, 2016, Scale-dependent variation in nitrogen cycling and soil fungal communities along gradients of forest composition and age in regenerating tropical dry forests, New Phytol., 209, 845, 10.1111/nph.13654 Wasaki, 2005, Root exudation, phosphorus acquisition, and microbial diversity in the rhizosphere of white lupine as affected by phosphorus supply and atmospheric carbon dioxide concentration, J. Environ. Qual., 34, 2157, 10.2134/jeq2004.0423 Wurzburger, 2015, Fine-root responses to fertilization reveal multiple nutrient limitation in a lowland tropical forest, Ecology, 96, 2137, 10.1890/14-1362.1 Yuan, 2011, Global-scale latitudinal patterns of plant fine-root nitrogen and phosphorus, Nat. Commun., 2, ncomms1346, 10.1038/ncomms1346 Yue, 2017, Effects of three global change drivers on terrestrial C:N: P stoichiometry: a global synthesis, Global Change Biol., 23, 2450, 10.1111/gcb.13569 Zechmeister-Boltenstern, 2015, The application of ecological stoichiometry to plant-microbial-soil organic matter transformations, Ecol. Monogr., 85, 133, 10.1890/14-0777.1 Zobel, 2007, Fine root diameters can change in response to changes in nutrient concentrations, Plant Soil, 297, 243, 10.1007/s11104-007-9341-2