Reprogramming cellular identity during intestinal regeneration
Tài liệu tham khảo
Krndija, 2019, Active cell migration is critical for steady-state epithelial turnover in the gut, Science, 365, 705, 10.1126/science.aau3429
Mills, 2019, Nomenclature for cellular plasticity: are the terms as plastic as the cells themselves?, EMBO J, 38, 10.15252/embj.2019103148
Hyun, 2019, Dysregulated activation of fetal liver programme in acute liver failure, Gut, 68, 1076, 10.1136/gutjnl-2018-317603
Fernandez Vallone, 2016, Trop2 marks transient gastric fetal epithelium and adult regenerating cells after epithelial damage, Development, 143, 1452
Yui, 2018, YAP/TAZ-dependent reprogramming of colonic epithelium links ECM remodeling to tissue regeneration, Cell Stem Cell, 22, 35, 10.1016/j.stem.2017.11.001
Nusse, 2018, Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche, Nature, 559, 109, 10.1038/s41586-018-0257-1
Tata, 2018, Developmental history provides a roadmap for the emergence of tumor plasticity, Dev Cell, 44, 679, 10.1016/j.devcel.2018.02.024
Beck, 1999, Reprogramming of intestinal differentiation and intercalary regeneration in Cdx2 mutant mice, Proc Natl Acad Sci U S A, 96, 7318, 10.1073/pnas.96.13.7318
Richards, 2021, Gradient of developmental and injury response transcruptional states defiens functional vulnerabilities underpinning glioblastoma heterogeneity, Nat Cancer, 2, 157, 10.1038/s43018-020-00154-9
Jadhav, 2019, Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA, Mol Cell, 74, 542, 10.1016/j.molcel.2019.02.024
Kumar, 2019, The lineage-specific transcription factor CDX2 navigates dynamic chromatin to control distinct stages of intestine development, Development, 146
Chen, 2019, HNF4 factors control chromatin accessibility and are redundantly required for maturation of the fetal intestine, Development, 146
Banerjee, 2018, Enhancer, transcriptional, and cell fate plasticity precedes intestinal determination during endoderm development, Genes Dev, 32, 1430, 10.1101/gad.318832.118
Chen, 2019, A reinforcing HNF4-SMAD4 feed-forward module stabilizes enterocyte identity, Nat Genet, 51, 777, 10.1038/s41588-019-0384-0
Miura, 2017, Generation of mouse and human organoid-forming intestinal progenitor cells by direct lineage reprogramming, Cell Stem Cell, 21, 456, 10.1016/j.stem.2017.08.020
Guiu, 2019, Tracing the origin of adult intestinal stem cells, Nature, 570, 107, 10.1038/s41586-019-1212-5
Kinchen, 2018, Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease, Cell, 175, 372, 10.1016/j.cell.2018.08.067
Fawkner-Corbett, 2021, Spatiotemporal analysis of human intestinal development at single-cell resolution, Cell, 184, 810, 10.1016/j.cell.2020.12.016
Elmentaite, 2020, Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohn’s disease, Dev Cell, 55, 771, 10.1016/j.devcel.2020.11.010
Ayyaz, 2019, Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell, Nature, 569, 121, 10.1038/s41586-019-1154-y
Tan, 2021, A constant pool of Lgr5(+) intestinal stem cells is required for intestinal homeostasis, Cell Rep, 34, 108633, 10.1016/j.celrep.2020.108633
Tian, 2011, A reserve stem cell population in small intestine renders Lgr5-positive cells dispensable, Nature, 478, 255, 10.1038/nature10408
Yu, 2018, Paneth cell multipotency induced by notch activation following injury, Cell Stem Cell, 23, 46, 10.1016/j.stem.2018.05.002
Jones, 2019, Cellular plasticity of defa4(Cre)-expressing paneth cells in response to notch activation and intestinal injury, Cell Mol Gastroenterol Hepatol, 7, 533, 10.1016/j.jcmgh.2018.11.004
Schmitt, 2018, Paneth cells respond to inflammation and contribute to tissue regeneration by acquiring stem-like features through SCF/c-kit signaling, Cell Rep, 24, 2312, 10.1016/j.celrep.2018.07.085
Harnack, 2019, R-spondin 3 promotes stem cell recovery and epithelial regeneration in the colon, Nat Commun, 10, 10.1038/s41467-019-12349-5
Tomic, 2018, Phospho-regulation of ATOH1 is required for plasticity of secretory progenitors and tissue regeneration, Cell Stem Cell, 23, 436, 10.1016/j.stem.2018.07.002
Castillo-Azofeifa, 2019, Atoh1(+) secretory progenitors possess renewal capacity independent of Lgr5(+) cells during colonic regeneration, EMBO J, 38, 10.15252/embj.201899984
de Sousa, 2019, Cellular plasticity in intestinal homeostasis and disease, Cell Stem Cell, 24, 54, 10.1016/j.stem.2018.11.019
Jadhav, 2017, Dynamic reorganization of chromatin accessibility signatures during dedifferentiation of secretory precursors into Lgr5+ intestinal stem cells, Cell Stem Cell, 21, 65, 10.1016/j.stem.2017.05.001
Murata, 2020, Ascl2-dependent cell dedifferentiation drives regeneration of ablated intestinal stem cells, Cell Stem Cell, 26, 377, 10.1016/j.stem.2019.12.011
Gregorieff, 2015, Yap-dependent reprogramming of Lgr5(+) stem cells drives intestinal regeneration and cancer, Nature, 526, 715, 10.1038/nature15382
Panciera, 2016, Induction of expandable tissue-specific stem/progenitor cells through transient expression of YAP/TAZ, Cell Stem Cell, 19, 725, 10.1016/j.stem.2016.08.009
Roulis, 2020, Paracrine orchestration of intestinal tumorigenesis by a mesenchymal niche, Nature, 580, 524, 10.1038/s41586-020-2166-3
Kim, 2017, Prostaglandin E2 Activates YAP and a positive-signaling loop to promote colon regeneration after colitis but also carcinogenesis in mice, Gastroenterology, 152, 616, 10.1053/j.gastro.2016.11.005
Miyoshi, 2017, Prostaglandin E2 promotes intestinal repair through an adaptive cellular response of the epithelium, EMBO J, 36, 5, 10.15252/embj.201694660
Li, 2018, COX-2-PGE2 signaling impairs intestinal epithelial regeneration and associates with TNF inhibitor responsiveness in ulcerative colitis, EBioMedicine, 36, 497, 10.1016/j.ebiom.2018.08.040
Greicius, 2018, PDGFRalpha(+) pericryptal stromal cells are the critical source of Wnts and RSPO3 for murine intestinal stem cells in vivo, Proc Natl Acad Sci U S A, 115, E3173, 10.1073/pnas.1713510115
Jarde, 2020, Mesenchymal niche-derived neuregulin-1 drives intestinal stem cell proliferation and regeneration of damaged epithelium, Cell Stem Cell, 27, 646, 10.1016/j.stem.2020.06.021
McCarthy, 2020, Cellular and molecular architecture of the intestinal stem cell niche, Nat Cell Biol, 22, 1033, 10.1038/s41556-020-0567-z
Sato, 2009, Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche, Nature, 459, 262, 10.1038/nature07935
Serra, 2019, Self-organization and symmetry breaking in intestinal organoid development, Nature, 569, 66, 10.1038/s41586-019-1146-y
Lukonin, 2020, Phenotypic landscape of intestinal organoid regeneration, Nature, 586, 275, 10.1038/s41586-020-2776-9
Zwiggelaar, 2020, LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium, Sci Adv, 6, 10.1126/sciadv.abc0367
Ostrop, 2020, A semi-automated organoid screening method demonstrates epigenetic control of intestinal epithelial differentiation, Front Cell Dev Biol, 8, 618552, 10.3389/fcell.2020.618552
Wang, 2019, Long-term culture captures injury-repair cycles of colonic stem cells, Cell, 179, 1144, 10.1016/j.cell.2019.10.015
Fordham, 2013, Transplantation of expanded fetal intestinal progenitors contributes to colon regeneration after injury, Cell Stem Cell, 13, 734, 10.1016/j.stem.2013.09.015
Mustata, 2013, Identification of Lgr5-independent spheroid-generating progenitors of the mouse fetal intestinal epithelium, Cell Rep, 5, 421, 10.1016/j.celrep.2013.09.005
Nikolaev, 2020, Homeostatic mini-intestines through scaffold-guided organoid morphogenesis, Nature, 585, 574, 10.1038/s41586-020-2724-8
Nanki, 2020, Somatic inflammatory gene mutations in human ulcerative colitis epithelium, Nature, 577, 254, 10.1038/s41586-019-1844-5
Kakiuchi, 2020, Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis, Nature, 577, 260, 10.1038/s41586-019-1856-1
Olafsson, 2020, Somatic evolution in non-neoplastic IBD-affected colon, Cell, 182, 672, 10.1016/j.cell.2020.06.036
Lee-Six, 2019, The landscape of somatic mutation in normal colorectal epithelial cells, Nature, 574, 532, 10.1038/s41586-019-1672-7
Nicholson, 2018, Fixation and spread of somatic mutations in adult human colonic epithelium, Cell Stem Cell, 22, 909, 10.1016/j.stem.2018.04.020
Baker, 2019, Evolutionary history of human colitis-associated colorectal cancer, Gut, 68, 985, 10.1136/gutjnl-2018-316191