Replication initiator protein mRNA of ColE2 plasmid and its antisense regulator RNA are under the control of different degradation pathways

Afonyushkin, 2005, Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB, Nucleic Acids Res., 33, 1678, 10.1093/nar/gki313 Arraiano, 1988, Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12, J. Bacteriol., 170, 4625, 10.1128/jb.170.10.4625-4633.1988 Babitzke, 1993, Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III, J. Bacteriol., 175, 229, 10.1128/jb.175.1.229-239.1993 Braun, 1998, Ribosomes inhibit an RNase E cleavage which induces the decay of the rpsO mRNA of Escherichia coli, EMBO J., 17, 4790, 10.1093/emboj/17.16.4790 Deutscher, 2006, Degradation of RNA in bacteria: comparison of mRNA and stable RNA, Nucleic Acids Res., 34, 659, 10.1093/nar/gkj472 Donovan, 1986, Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12, Proc. Natl. Acad. Sci. USA, 83, 120, 10.1073/pnas.83.1.120 Guzman, 1995, Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter, J. Bacteriol., 177, 4121, 10.1128/jb.177.14.4121-4130.1995 Hajnsdorf, 1999, E. coli RpsO mRNA decay: RNase E processing at the beginning of the coding sequence stimulates poly(A)-dependent degradation of the mRNA, J. Mol. Biol., 286, 033 Han, 2006, Specific interaction between the initiator protein (Rep) and origin of plasmid ColE2-P9, J. Bacteriol., 2007, 1061 Ingle, 1996, Development of an in vitro mRNA decay system for Escherichia coli: poly(A) polymerase I is necessary to trigger degradation, Proc. Natl. Acad. Sci. USA, 93, 12926, 10.1073/pnas.93.23.12926 Itoh, 1989, Replication of ColE2 and ColE3 plasmids: in vitro replication dependent on plasmid-coded proteins, Mol. Gen. Genet., 219, 249, 10.1007/BF00261184 Khemici, 2004, The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers, Mol. Microbiol., 51, 777, 10.1046/j.1365-2958.2003.03862.x Kido, 1991, Identification of a plasmid-coded protein required for initiation of ColE2 DNA replication, Nucleic Acids Res., 19, 2875, 10.1093/nar/19.11.2875 Kushner, 2002, mRNA decay in Escherichia coli comes of age, J. Bacteriol., 184, 4658, 10.1128/JB.184.17.4658-4665.2002 Lin-Chao, 1991, The rate of processing and degradation of antisense RNA I regulates the replication of ColE1-type plasmids in vivo, Cell, 65, 1233, 10.1016/0092-8674(91)90018-T Mackie, 1998, Ribonuclease E is a 5-end-dependent endonuclease, Nature, 395, 720, 10.1038/27246 Marujo, 2003, Inactivation of the decay pathway initiated at an internal site by RNase E promotes poly(A)-dependent degradation of the rpsO mRNA in Escherichia coli, Mol. Microbiol., 50, 1283, 10.1046/j.1365-2958.2003.03753.x Marujo, 2000, RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli, RNA, 6, 1185, 10.1017/S135583820000073X Mohanty, 2003, Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay, Mol. Microbiol., 50, 645, 10.1046/j.1365-2958.2003.03724.x Mudd, 1993, Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA, Mol. Microbiol., 9, 557, 10.1111/j.1365-2958.1993.tb01716.x Nagase, 2007, Importance of the leader region of mRNA for translation initiation of ColE2 Rep protein, Plasmid, 58, 249, 10.1016/j.plasmid.2007.07.001 Nagase, 2008, Essential elements in the coding region of mRNA for translation of ColE2 Rep protein, Plasmid, 59, 36, 10.1016/j.plasmid.2007.07.003 O’Hara, 1995, Polyadenylylation helps regulate mRNA decay in Escherichia coli, Proc. Natl. Acad. Sci. USA, 92, 1807, 10.1073/pnas.92.6.1807 Ow, 2000, Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly, Mol. Microbiol., 38, 854, 10.1046/j.1365-2958.2000.02186.x Ow, 2003, RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E, Mol. Microbiol., 49, 607, 10.1046/j.1365-2958.2003.03587.x Portier, 1987, The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end, EMBO J., 6, 2165, 10.1002/j.1460-2075.1987.tb02484.x Py, 1994, A protein complex mediating mRNA degradation in Escherichia coli, Mol. Microbiol., 14, 717, 10.1111/j.1365-2958.1994.tb01309.x Py, 1996, A DEAD-box RNA helicase in the Escherichia coli RNA degradosome, Nature, 381, 169, 10.1038/381169a0 Söderbom, 1998, Degradation pathway of CopA, the antisense RNA that controls rep;ication of plasmid R1, Microbiology, 144, 1907, 10.1099/00221287-144-7-1907 Söderbom, 1997, Regulation of plasmid R1 replication: PcnB and RNase E expedite the decay of the antisense RNA, CopA, Mol. Microbiol., 26, 493, 10.1046/j.1365-2958.1997.5871953.x Spickler, 2001, Preferential cleavage of degradative intermediates of rpsT mRNA by the Escherichia coli degradosome, J. Bacteriol., 183, 1106, 10.1128/JB.183.3.1106-1109.2001 Sugiyama, 1993, Control of ColE2 DNA replication: in vitro binding of the antisense RNA to the Rep mRNA, Nucleic Acids Res., 21, 5972, 10.1093/nar/21.25.5972 Takechi, 1995, Initiation of unidirectional ColE2 DNA replication by a unique priming mechanism, Nucleic Acids Res., 23, 4196, 10.1093/nar/23.20.4196 Takechi, 1995, Primer RNA synthesis by plasmid-specified Rep protein for initiation of ColE2 DNA replication, EMBO J., 14, 5141, 10.1002/j.1460-2075.1995.tb00196.x Takechi, 1994, Control of ColE2 plasmid replication: regulation of Rep expression by a plasmid-coded antisense RNA, Mol. Gen. Genet., 244, 49, 10.1007/BF00280186 Umitsuki, 2001, Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli, Genes Cells, 6, 403, 10.1046/j.1365-2443.2001.00430.x Xu, 1995, RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation, Nature, 374, 180, 10.1038/374180a0 Yasueda, 1994, Control of ColE2 plasmid replication: negative regulation of the expression of the plasmid-specified initiator protein, Rep, at a posttranscriptional step, Mol. Gen. Genet., 244, 41, 10.1007/BF00280185 Zilhao, 1996, PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism, Mol. Microbiol., 20, 1033, 10.1111/j.1365-2958.1996.tb02544.x