Relationships between mycobiont identity, photobiont specificity and ecological preferences in the lichen genus Peltigera (Ascomycota) in Estonia (northeastern Europe)
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Aschenbrenner, 2016, Understanding microbial multi-species symbioses, Front. Microbiol., 7, 180, 10.3389/fmicb.2016.00180
Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 16, 37, 10.1093/oxfordjournals.molbev.a026036
Beck, 1998, Selectivity of photobiont choice in a defined lichen community: inference from cultural and molecular studies, New Phytol., 139, 709, 10.1046/j.1469-8137.1998.00231.x
Beck, 2002, Myco-photobiontal selection in a Mediterranean cryptogam community with Fulgensia fulgida, New Phytol., 153, 317, 10.1046/j.0028-646X.2001.00315.x
Blaha, 2006, High photobiont diversity in symbioses of the euryoecious lichen Lecanora rupicola (Lecanoraceae, Ascomycota), Biol. J. Linn. Soc., 88, 283, 10.1111/j.1095-8312.2006.00640.x
Büdel, 2014, Improved appreciation of the functioning and importance of biological soil crusts in Europe e the Soil Crust International project (SCIN), Biodivers. Conserv., 23, 1639, 10.1007/s10531-014-0645-2
Casano, 2010, Two Trebouxia algae with different physiological performances are ever-present in lichen thalli of Ramalina farinacea. Coexistence versus competition?, Environ. Microbiol., 13, 806, 10.1111/j.1462-2920.2010.02386.x
Chagnon, 2018, Strong specificity and network modularity at a very fine phylogenetic scale in the lichen genus Peltigera, Oecologia, 187, 767, 10.1007/s00442-018-4159-6
Cornejo, 2016, Cyanobacterial gardens: the liverwort Frullania asagrayana acts as a reservoir of lichen photobionts, Env. Microb. Rep., 8, 352, 10.1111/1758-2229.12386
Costa, 2001, Genetic diversity of Nostoc symbionts endophytically associated with two bryophyte species, Appl. Environ. Microbiol., 67, 4393, 10.1128/AEM.67.9.4393-4396.2001
Costa, 2002, The cyanobacterial tRNALeu (UAA) intron: evolutionary patterns in a genetic marker, Mol. Biol. Evol., 19, 850, 10.1093/oxfordjournals.molbev.a004142
Dal Grande, 2014, Molecular phylogeny and symbiotic selectivity of the green algal genus Dictyochloropsis s. l. (Trebouxiophyceae): a polyphyletic and widespread group forming photobiont-mediated guilds in the lichen family Lobariaceae, New Phytol., 202, 455, 10.1111/nph.12678
Dal Grande, 2018, Environment and host identity structure communities of green algal symbionts in lichens, New Phytol., 217, 277, 10.1111/nph.14770
Dormann, 2008, Introducing the bipartite package: analysing ecological networks, R. News, 8, 8
Elvebakk, 2008, Phylogenetic patterns among Nostoc cyanobionts within bi- and tripartite lichens of the genus Pannaria, J. Phycol., 44, 1049, 10.1111/j.1529-8817.2008.00556.x
Eriksson, 2002, Land-use history and fragmentation of traditionally managed grasslands in Scandinavia, J. Veg. Sci., 13, 743, 10.1111/j.1654-1103.2002.tb02102.x
Fedrowitz, 2011, Genotype variability of Nostoc symbionts in three epiphytic Nephroma species in a boreal forest landscape, Bryologist, 114, 220, 10.1639/0007-2745-114.1.220
Fedrowitz, 2012, Geographic mosaic of symbiont selectivity in a genus of epiphytic cyanolichens, Ecol. Evol., 2, 2291, 10.1002/ece3.343
Fernández-Mendoza, 2011, Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata, Mol. Ecol., 20, 1208, 10.1111/j.1365-294X.2010.04993.x
Grube, 2016, Lichenized fungi and the evolution of symbiotic organization, Microbiol. Spectr., 4, 10.1128/microbiolspec.FUNK-0011-2016
Grube, 2009, Species-specific structural and functional diversity of bacterial communities in lichen symbioses, ISME J., 3, 1105, 10.1038/ismej.2009.63
Guzow-Krzeminska, 2006, Photobiont flexibility in the lichen Protoparmeliopsis muralis as revealed by ITS rDNA analyses, Lichenologist, 38, 469, 10.1017/S0024282906005068
Henskens, 2012, Cyanolichens can have both cyanobacteria and green algae in a common layer as major contributors to photosynthesis, Ann. Bot., 110, 555, 10.1093/aob/mcs108
Joneson, 2017, A molecular investigation of free-living and lichenized Nostoc sp. and symbiotic lifestyle determination, Bryologist, 120, 371, 10.1639/0007-2745-120.4.371
Jüriado, 2017, Specialist taxa restricted to threatened habitats contribute significantly to the regional diversity of Peltigera (Lecanoromycetes, Ascomycota) in Estonia, Fungal Ecol., 30, 76, 10.1016/j.funeco.2017.08.004
Kaasalainen, 2013, Lichen species identity and diversity of cyanobacterial toxins in symbiosis, New Phytol., 198, 647, 10.1111/nph.12215
Kaasalainen, 2009, Microcystin production in the tripartite cyanolichen Peltigera leucophlebia, Mol. Plant Microbe Interact., 22, 695, 10.1094/MPMI-22-6-0695
Kaasalainen, 2015, Evolution of the tRNALeu (UAA) intron and congruence of genetic markers in lichen-symbiotic Nostoc, PloS One, 10, e0131223, 10.1371/journal.pone.0131223
Köster, 2016, Interrelationships between soil cover and plant cover depending on land use, Est. J. Earth Sci., 62, 93, 10.3176/earth.2013.08
Leavitt, 2013, Symbiont flexibility in subalpine rock shield lichen communities in the Southwestern USA, Bryologist, 116, 149, 10.1639/0007-2745-116.2.149
Leavitt, 2015, Fungal specificity and selectivity for algae play a major role in determining lichen partnerships across diverse ecogeographic regions in the lichen-forming family Parmeliaceae (Ascomycota), Mol. Ecol., 24, 3779, 10.1111/mec.13271
Leavitt, 2016, Cryptic diversity and symbiont interactions in rock-posy lichens, Mol. Phylogenet. Evol., 99, 261, 10.1016/j.ympev.2016.03.030
Leppik, 2013, The conservation of ground layer lichen communities in alvar grasslands and the relevance of substitution habitats, Biodivers. Conserv., 22, 591, 10.1007/s10531-012-0430-z
Leppik, 2015, Functional ecology of rare and common epigeic lichens in alvar grasslands, Fungal Ecol., 13, 66, 10.1016/j.funeco.2014.08.003
Librado, 2009, DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 25, 1451, 10.1093/bioinformatics/btp187
Lu, 2018, Bioclimatic factors at an intrabiome scale are more limiting than cyanobiont availability for the lichen-forming genus Peltigera, Am. J. Bot., 105, 1198, 10.1002/ajb2.1119
Lücking, 2009, Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria, Am. J. Bot., 96, 1409, 10.3732/ajb.0800258
Magain, 2017, Macroevolution of specificity in cyanolichens of the genus Peltigera section polydactylon (Lecanoromycetes, Ascomycota), Syst. Biol., 66, 74
Magain, 2017, Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon, Mol. Phylogenet. Evol., 117, 10, 10.1016/j.ympev.2017.08.013
Manoharan-Basil, 2016, Peltigera islandica, a new cyanolichen species in section Peltigera (‘P. canina group’), Lichenologist, 48, 451, 10.1017/S0024282916000414
Miadlikowska, 2000, Phylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data, Int. J. Plant Sci., 161, 925, 10.1086/317568
Miadlikowska, 2003, New approach to an old problem: incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex, Mycologia, 95, 1181, 10.1080/15572536.2004.11833027
Miadlikowska, 2014, Phylogenetic placement, species delimitation, and cyanobiont identity of endangered aquatic Peltigera species (lichen-forming Ascomycota, Lecanoromycetes), Am. J. Bot., 101, 1141, 10.3732/ajb.1400267
Muggia, 2008, Genetic diversity and photobiont associations in selected taxa of the Tephromela atra group (Lecanorales, lichenised Ascomycota), Mycol. Prog., 7, 147, 10.1007/s11557-008-0560-6
Muggia, 2013, The symbiotic playground of lichen thalli – a highly flexible photobiont association in rock-inhabiting lichens, FEMS Microbiol. Ecol., 85, 313, 10.1111/1574-6941.12120
Muggia, 2014, Photobiont selectivity leads to ecological tolerance and evolutionary divergence in a polymorphic complex of lichenized fungi, Ann. Bot., 114, 463, 10.1093/aob/mcu146
Myllys, 2007, High cyanobiont selectivity of epiphytic lichens in old growth boreal forest of Finland, New Phytol., 173, 621, 10.1111/j.1469-8137.2006.01944.x
O'Brien, 2005, Assessing host specialization in symbiotic cyanobacteria associated with four closely related species of the lichen fungus Peltigera, Eur. J. Phycol., 40, 363, 10.1080/09670260500342647
O'Brien, 2013, Assessing population structure and host specialization in lichenized cyanobacteria, New Phytol., 198, 557, 10.1111/nph.12165
Onuţ-Brännström, 2018, Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing, Sci. Rep., 8, 4406, 10.1038/s41598-018-22470-y
Ortiz-Álvarez, 2015, Ecological specialization of two photobiont-specific maritime cyanolichen species of the genus Lichina, 10, e0132718
Otálora, 2010, Multiple origins of high reciprocal specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes), Mol. Phylogenet. Evol., 56, 1089, 10.1016/j.ympev.2010.05.013
Otálora, 2013, Does the reproductive strategy affect the transmission and genetic diversity of bionts in cyanolichens? A case study using two closely related species, Microb. Ecol., 65, 517, 10.1007/s00248-012-0136-5
Paul, 2018, Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens, Sci. Rep., 8, 8624, 10.1038/s41598-018-26947-8
Paulsrud, 1998, Sequence variation of the tRNA Leu intron as a marker for genetic diversity and specificity of symbiotic cyanobacteria in some lichens, Appl. Environ. Microbiol., 64, 310, 10.1128/AEM.64.1.310-315.1998
Paulsrud, 1998, Cyanobiont specificity in some Nostoc-containing lichens and in a Peltigera aphthosa photosymbiodeme, New Phytol., 139, 517, 10.1046/j.1469-8137.1998.00220.x
Paulsrud, 2000, Spatial patterns of photobiont diversity in some Nostoc-containing lichens, New Phytol., 146, 291, 10.1046/j.1469-8137.2000.00647.x
Paulsrud, 2001, Field investigations on cyanobacterial specificity in Peltigera aphthosa, New Phytol., 152, 117, 10.1046/j.0028-646x.2001.00234.x
Pärtel, 2007, Grassland diversity related to the Late Iron Age human population density, J. Ecol., 95, 574
Peksa, 2011, Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae), Mol. Ecol., 20, 3936, 10.1111/j.1365-294X.2011.05168.x
R Core Team, 2017
Ramírez-Fernández, 2013, Genetic diversity of terricolous Peltigera cyanolichen communities in different conservation states of native forest from Southern Chile, Int. Microbiol., 16, 243
Rikkinen, 2002, Cyanolichens: an evolutionary overview, 31
Rikkinen, 2003, Ecological and evolutionary role of photobiont-mediated guilds in lichens, Symbiosis, 34, 99
Rikkinen, 2013, Molecular studies on cyanobacterial diversity in lichen symbioses, MycoKeys, 6, 3, 10.3897/mycokeys.6.3869
Rikkinen, 2017, Symbiotic cyanobacteria in lichens, 147
Rikkinen, 2017, Cyanobacteria in terrestrial symbiotic systems, 243
Rikkinen, 2008, Genetic diversity in cyanobacterial symbionts of thalloid bryophytes, J. Exp. Bot., 59, 1013, 10.1093/jxb/ern003
Rikkinen, 2002, Lichen guilds share related cyanobacterial symbionts, Science, 297, 357, 10.1126/science.1072961
Rolshausen, 2018, Quantifying the climatic niche of symbiont partners in a lichen symbiosis indicates mutualist-mediated niche expansions, Ecography, 40, 1380, 10.1111/ecog.03457
Sadowska-Deś, 2014, Integrating coalescent and phylogenetic approaches to delimit species in the lichen photobiont Trebouxia, Mol. Phylogenet. Evol., 76, 202, 10.1016/j.ympev.2014.03.020
Sigurbjörnsdóttir, 2015, Analysis of the Peltigera membranacea metagenome indicates that lichen-associated bacteria are involved in phosphate solubilization, Microbiology, 161, 989, 10.1099/mic.0.000069
Singh, 2017, Fungal–algal association patterns in lichen symbiosis linked to macroclimate, New Phytol., 214, 317, 10.1111/nph.14366
Spribille, 2016, Basidiomycete yeasts in the cortex of ascomycete macrolichens, Science, 10.1126/science.aaf8287
Stenroos, 2006, High selectivity in symbiotic associations of lichenized ascomycetes and cyanobacteria, Cladistics, 22, 230, 10.1111/j.1096-0031.2006.00101.x
Summerfield, 2002, Species of cyanolichens from Pseudocyphellaria with indistinguishable ITS sequences have different photobionts, New Phytol., 155, 121, 10.1046/j.1469-8137.2002.00431.x
Šmilauer, 2014
ter Braak, 2004, Co-correspondence analysis: a new ordination method to relate two community compositions, Ecology, 85, 834, 10.1890/03-0021
ter Braak, 2012
Vargas Castillo, 2012, Photobiont selectivity and specificity in Caloplaca species in a fog-induced community in the Atacama Desert, northern Chile, Fungal Biol., 116, 665, 10.1016/j.funbio.2012.04.001
Vitikainen, 1994, Taxonomic revision of Peltigera (lichenized Ascomycotina) in Europe, Acta Bot. Fenn., 152, 1
Vitikainen, 2007, Peltigeraceae, Nordic Lichen Flora, 3, 113
Werth, 2014, Ecological specialization in Trebouxia (Trebouxiophyceae) across six range-covering ecoregions of western North America, Am. J. Bot., 101, 1127, 10.3732/ajb.1400025
Williams, 2017, Lichen acclimation to changing environments: photobiont switching vs. climate-specific uniqueness in Psora decipiens, Ecol. Evol., 7, 2560, 10.1002/ece3.2809
Yahr, 2006, Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis, New Phytol., 171, 847, 10.1111/j.1469-8137.2006.01792.x
Zúñiga, 2015, Phylogenetic diversity of Peltigera cyanolichens and their photobionts in Southern Chile and Antarctica, Microb. Environ., 30, 172, 10.1264/jsme2.ME14156