Regulatory molecule cAMP changes cell fitness of the engineered Escherichia coli for terpenoids production

Ajikumar, 2010, Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli, Science, 330, 70, 10.1126/science.1191652 Ansbacher, 2018, Slow-starter enzymes: role of active-cite architecture in the catalytic control of the biosynthesis of taxadiene by taxadiene synthase, Biochemistry, 57, 3773, 10.1021/acs.biochem.8b00452 Bassler, 2018, Adenylate cyclases: receivers, transducers, and generators of signals, Cell. Signal., 46, 135, 10.1016/j.cellsig.2018.03.002 Biggs, 2014, Multivariate modular metabolic engineering for pathway and strain optimization, Curr. Opin. Biotechnol., 29, 156, 10.1016/j.copbio.2014.05.005 Chae, 2017, Recent advances in systems metabolic engineering tools and strategies, Curr. Opin. Biotechnol., 47, 67, 10.1016/j.copbio.2017.06.007 Dahl, 2013, Engineering dynamic pathway regulation using stress-response promoters, Nat. Biotechnol., 31, 1039, 10.1038/nbt.2689 Dragosits, 2013, Adaptive laboratory evolution — principles and applications for biotechnology, Microb. Cell Factories, 12, 64, 10.1186/1475-2859-12-64 Gancedo, 2013, Biological roles of cAMP: variations on a theme in the different kingdoms of life, Biol. Rev. Camb. Phil. Soc., 88, 645, 10.1111/brv.12020 Gong, 2017, Engineering robustness of microbial cell factories, Biotechnol. J., 12, 1700014, 10.1002/biot.201700014 Green, 2014, Cyclic-AMP and bacterial cyclic-AMP receptor proteins revisited: adaptation for different ecological niches, Curr. Opin. Microbiol., 18, 1, 10.1016/j.mib.2014.01.003 Gunasekara, 2015, Directed evolution of the Escherichia coli cAMP receptor protein at the cAMP pocket, J. Biol. Chem., 290, 26587, 10.1074/jbc.M115.678474 Guzman, 2018, Reframing gene essentiality in terms of adaptive flexibility, BMC Syst. Biol., 12, 143, 10.1186/s12918-018-0653-z Hays, 2015, Better together: engineering and application of microbial symbioses, Curr. Opin. Biotechnol., 36, 40, 10.1016/j.copbio.2015.08.008 Henneman, 2011, Inhibition of the isoprenoid biosynthesis pathway: detection of intermediates by UPLC-MS/MS, Biochim. Biophys. Acta, 1811, 227, 10.1016/j.bbalip.2011.01.002 Holland, 1988, Isolation and characterization of a small catalytic domain released from the adenylate cyclase from Escherichia coli by digestion with trypsin, J. Biol. Chem., 263, 14661, 10.1016/S0021-9258(18)68088-3 Kim, 2016, Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts, Microb. Cell Factories, 15, 214, 10.1186/s12934-016-0612-6 Li, 2019, Recent advances of metabolic engineering strategies in natural isoprenoid production using cell factories, Nat. Prod. Rep., 37, 80, 10.1039/C9NP00016J Liao, 2016, The potential of the mevalonate pathway for enhanced isoprenoid production, Biotechnol. Adv., 34, 697, 10.1016/j.biotechadv.2016.03.005 Linder, 2008, Structure-function relationships in Escherichia coli adenylate cyclase, Biochem. J., 415, 449, 10.1042/BJ20080350 Lu, 2019, Modular metabolic engineering for biobased chemical production, Trends Biotechnol., 37, 152, 10.1016/j.tibtech.2018.07.003 Ma, 2019, Advances in the metabolic engineering of Yarrowia lipolytica for the production of terpenoids, Bioresour. Technol., 281, 449, 10.1016/j.biortech.2019.02.116 Majumdar, 1991, Functional consequences of substitution of the active site (phospho)histidine residue of Escherichia coli succinyl-CoA synthetase, Biochim. Biophys. Acta, 1076, 86, 10.1016/0167-4838(91)90223-M Mannan, 2017, Fundamental design principles for transcription-factor-based metabolite biosensors, ACS Synth. Biol., 6, 1851, 10.1021/acssynbio.7b00172 Martin, 2003, Engineering a mevalonate pathway in Escherichia coli for production of terpenoids, Nat. Biotechnol., 21, 796, 10.1038/nbt833 McCloskey, 2018, Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System, Metab. Eng., 48, 233, 10.1016/j.ymben.2018.06.005 Moser, 2019, Identifying and engineering the ideal microbial terpenoid production host, Appl. Microbiol. Biotechnol., 103, 5501, 10.1007/s00253-019-09892-y Nakamura, 1996, Two hydrophobic subunits are essential for the heme b ligation and functional assembly of complex II (succinate-ubiquinone oxidoreductase) from Escherichia coli, J. Biol. Chem., 271, 521, 10.1074/jbc.271.1.521 Notley-McRobb, 1997, The relationship between external glucose concentration and cAMP levels inside Escherichia coli: implications for models of phosphotransferase-mediated regulation of adenylate cyclase, Microbiology, 143, 1909, 10.1099/00221287-143-6-1909 Oyarzun, 2013, Synthetic gene circuits for metabolic control: design trade-offs and constraints, J. R. Soc. Interface, 10, 20120671, 10.1098/rsif.2012.0671 Park, 2006, In vitro reconstitution of catabolite repression in Escherichia coli, J. Biol. Chem., 281, 6448, 10.1074/jbc.M512672200 Soliman, 2015, Natural and engineered production of taxadiene with taxadiene synthase, Biotechnol. Bioeng., 112, 229, 10.1002/bit.25468 Song, 2015, Determination of single nucleotide variants in Escherichia coli DH5α by using short-read sequencing, FEMS Microbiol. Lett., 362, fnv073, 10.1093/femsle/fnv073 Stoebel, 2010, The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli, Mol. Biol. Evol., 27, 2105, 10.1093/molbev/msq101 Tan, 2000, Expression pattern of (+)-δ-cadinene synthase genes and biosynthesis of sesquiterpene aldehydes in plants of Gossypium arboreum L, Planta, 210, 644, 10.1007/s004250050055 Vavricka, 2019, Dynamic metabolomics for engineering biology: accelerating learning cycles for bioproduction, Trends Biotechnol., 38, 68, 10.1016/j.tibtech.2019.07.009 Wang, 2016, Farnesol production in Escherichia coli through the construction of a farnesol biosynthesis pathway - application of PgpB and YbjG phosphatases, Biotechnol. J., 11, 1291, 10.1002/biot.201600250 Wang, 2011, Metabolic engineering of Escherichia coli for α-farnesene production, Metab. Eng., 13, 648, 10.1016/j.ymben.2011.08.001 Wang, 2017, Metabolic engineering and synthetic biology approaches driving isoprenoid production in Escherichia coli, Bioresour. Technol., 241, 430, 10.1016/j.biortech.2017.05.168 Wang, 2019, Challenges and tackles in metabolic engineering for microbial production of carotenoids, Microb. Cell Factories, 18, 55, 10.1186/s12934-019-1105-1 Wang, 2019, Recent advances in modular co-culture engineering for synthesis of natural products, Curr. Opin. Biotechnol., 62, 65, 10.1016/j.copbio.2019.09.004 Wannier, 2018, Adaptive evolution of genomically recoded Escherichia coli, Proc. Natl. Acad. Sci. U. S. A., 115, 3090, 10.1073/pnas.1715530115 Ward, 2018, Metabolic engineering of Escherichia coli for the production of isoprenoids, FEMS Microbiol. Lett., 365, fny079, 10.1093/femsle/fny079 Weaver, 2015, A kinetic-based approach to understanding heterologous mevalonate pathway function in E. coli, Biotechnol. Bioeng., 112, 111, 10.1002/bit.25323 Wessler, 1981, Control of leu operon expression in Escherichia coli by a transcription attenuation mechanism, J. Mol. Biol., 149, 579, 10.1016/0022-2836(81)90348-X Yoon, 2009, Combinatorial expression of bacterial whole mevalonate pathway for the production of β-carotene in E. coli, J. Biotechnol., 140, 218, 10.1016/j.jbiotec.2009.01.008 Zada, 2018, Metabolic engineering of Escherichia coli for production of mixed isoprenoid alcohols and their derivatives, Biotechnol. Biofuels, 11, 210, 10.1186/s13068-018-1210-0 Zhao, 2019, Production of fuels and chemicals from renewable resources using engineered Escherichia coli, Biotechnol. Adv., S0734–9750, 30091 Zhou, 2015, Distributing a metabolic pathway among a microbial consortium enhances production of natural products, Nat. Biotechnol., 33, 377, 10.1038/nbt.3095