Reconstruction of phylogenetic relations of Ponto-Caspian gobies (Gobiidae, Perciformes) based on mitochondrial genome variation and some problems of their taxonomy
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Akihito, Iwata, A., Kobayashi, T., et al., Evolutionary aspects of gobioid fishes based upon a phylogenetic analysis of mitochondrial cytochrome b genes, Gene, 2000, vol. 259, pp. 5–15.
Beling, D. and Iljin, B., Benthophiloides brauneri n. g., n. sp., ein fur das Schwarzmeerbassin neuer Vertreter der Familie der Gobiidae, Trav. Stat. Biol. du Dniepre, 1927, no. 2, pp. 309–325.
Berg, L.S., Ryby presnykh vod SSSR i sopredel’nykh stran. Ch. 3 (Freshwater Fishes of the USSR and Adjacent Countries. Part 3), Moscow: Akad. Nauk SSSR, 1949.
Bogutskaya, N.G. and Naseka, A.M., Katalog beschelyustnykh i ryb presnykh i solonovatykh vod Rossii s nomenklaturnymi i taksonomicheskimi kommentariyami (Catalogue of Agnathans and Fishes of Fresh and Brakish Waters of Russia with Comments on Nomenclature and Taxonomy), Moscow: Tovarishchestvo Nauch. Izd. KMK, 2004.
Boldyrev, V.S. and Bogutskaya, N.G., Revision of the tadpole gobies of the genus Benthophilus (Teleostei: Gobiidae), Ichthyol. Explor. Freshwaters, 2007, vol. 18, no. 1, pp. 31–96.
Boldyrev, V.S. and Bogutskaya, N.G., Description of two new species of tadpole-gobies (Teleostei: Gobiidae: Benthophilus), Zoosyst. Rossica, 2004, vol. 13, p. 129–135.
Brown, J.E. and Stepien, C.A., Ancient divisions, recent expansions: phylogeography and population genetics of the round goby Apollonia melanostoma, Mol. Ecol., 2008, vol. 17, pp. 2598–2615.
Diripasko, O.A., Izergin, L.V., and Dem’yanenko, K.V., Ryby Azovskogo morya (Fish of the Sea of Azov), Berdyansk: NPK Inter-M, 2011.
Freyhof, J., Diversity and distribution of freshwater gobies from the Mediterranean, the Black and Caspian Seas. Ch. 2.6, in The Biology of Gobies, Patzner, R.A. et al., Eds., Enfield, New Hampshire: CRC Press, Taylor and Francis Group, Sci. Publ., 2011.
Grigoryan, K.A. and Vasil’ev, V.P., Karyotypes of five species of goby (Gobiidae) from the basins of the Black and Caspian seas, Vopr. Ikhtiol., 1992, vol. 32, no. 1, pp. 162–166.
Grigoryan, K.A. and Vasil’ev, V.P., Comparative analysis of karyotypes of three species of gobies (Gobiidae) from the Black Sea basin in the connection with their taxonomic relationships, Vopr. Ikhtiol., 1993, vol. 33, no. 3, pp. 449–452.
Guindon, S. and Gascuel, O., A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst. Biol., 2003, vol. 52, no. 5, pp. 696–704.
Hall, T.A., Bioedit: a User friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp. Ser., 1999, no. 41, pp. 95–98.
Hasegawa, M., Kishino, H., and Yano, T., Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, J. Mol. Evol., 1985, vol. 22, no. 2, pp. 160–174.
Huson, D.H. and Scornavacca, C., Dendroscope 3-an interactive viewer for rooted phylogenetic trees and networks, Syst. Biol., 2012, vol. 61, no. 6, pp. 1061–1067.
Iljin, B.S., Comments and corrections to the subgenus Gobioidei in L.S. Berg’s book “Freshwater Fishes of the Soviet Union and Adjacent Countries,” Vopr. Ikhtiol., 1956, no. 7, pp. 185–192.
Iljin, B.S., A guide to the gobies (Fam. Gobiidae) of the Azov and Black seas, Tr. Az.-Chernomor. Nauch.-Promysl. Eksped., 1927, no. 2, pp. 128–143.
Iljin, B.S., Le systeme des Gobiides, Trab. Inst. Esp. Oceanogr., 1930, vol. 2, pp. 1–63.
Kottelat, M. and Freyhof, J., Handbook of European Freshwater Fishes, Cornol-Berlin: Kottelat & Freyhof, 2007.
Kovačić, M. and Patzner, R.A., North-eastern Atlantic and Mediterranean gobies. Ch. 2.2, in The Biology of Gobies, Patzner, R.A. et al., Eds., Enfield, New Hampshire: CRC Press, Taylor and Francis Group, Sci. Publ., 2011, pp. 177–206.
Kryzhanovskii, S.G. and Pchelina, Z.M., On the principle of structure of the system of gobies from the family Gobiidae, Zool. Zh., 1941, vol. 20, no. 3, pp. 446–454.
Miller, P.J., The Endurance of endemism: the Mediterranean freshwater gobies and their prospects for survival, J. Fish Biol., 1990, vol. 37,suppl. A, pp. 145–156.
Miller, P.J., Gobiidae, in FNAM, Paris: UNESCO, 1986, vol. 3, pp. 1019–1085.
Miller, P.J. (Ed.), The Freshwater Fishes of Europe. Mugilidae, Atherinidae, Atherinopsidae, Blenniidae, Odontobutidae, Gobiidae 1, Wiebelsheim: AULA-Verlag, 2003, vol. 8/I.
Miller, P.J. (Ed.), The Freshwater Fishes of Europe. Gobiidae 2, Wiebelsheim: AULA-Verlag, 2004, vol. 8/II.
Neilson, M.E. and Stepien, C.A., Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): Evidence for new cryptic species, Biol. J. Linn. Soc., 2009b, vol. 96, pp. 664–684.
Neilson, M.E. and Stepien, C.A., Escape from the PontoCaspian: evolution and biogeography of an endemic goby species flock (Benthophilinae: Gobiidae: Teleostei), Mol. Phylogenet. Evol., 2009a, vol. 52, pp. 84–102.
Patzner, R.A., Van Tassell, J.L., Kova ic-, M., and Kapoor, B.G. (Eds.), The Biology of Gobies, Enfield, New Hampshire: CRC Press, Taylor and Francis Group, Sci. Publ., 2011.
Posada, D. and Crandall, K.A., MODELTEST: Testing the model of DNA substitution, Bioinformatics, 1998, vol. 14, no. 9, pp. 817–818.
Prazdnikov, D.V., Vasil’ev, V.P., and Vasil’eva, E.D., Polymorphism and interpopulation variability of the karyotype in the Caspian bighead goby Neogobius gorlap (Gobiidae, Perciformes), J. Ichthyol., 2013, vol. 53, no. 6, pp. 425–430.
Stepien, C.A. and Tumeo, M.A., Invasion genetics of Ponto-Caspian gobies in the Great Lakes: a “cryptic” species, absence of founder effects, and comparative risk analysis, Biol. Invasions, 2006, vol. 8, pp. 61–78.
Stepien, C.A., Brown, J.E., Neilson, M.E., and Tumeo, M.A., Genetic diversity of invasive species in the Great Lakes versus their Eurasian source populations: insights for risk analysis, Risk Analysis, 2005, vol. 25, no. 4, pp. 1043–1060.
Svetovidov, A.N., Ryby Chernogo morya (Fishes of the Black Sea), Moscow-Leningrad: Nauka, 1964.
Tamura, K., Peterson, D., Peterson, N., et al., MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 2011, vol. 28, pp. 2731–2739.
Tamura, K. and Nei, M., Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees, Mol. Biol. Evol., 1993, vol. 10, pp. 512–526.
Tamura, K., Dudley, J., Nei, M., and Kumar, S., MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0, Mol. Biol. Evol., 2007, vol. 24, pp. 1596–1599.
Vasil’ev, V.P., Evolyutsionnaya kariologiya ryb (Evolutionary Karyology of Fishes), Moscow: Nauka, 1985.
Vasil’ev, V.P. and Grigoryan, K.A., Wide chromosome polymorphism of the Caucasian freshwater goby, Dokl. Akad. Nauk SSSR, 1990, vol. 311, pp. 1509–1511.
Vasil’ev, V.P. and Grigoryan, K.A., Karyology of fishes of the family Gobiidae, Vopr. Ikhtiol., 1992, vol. 32, no. 5, pp. 27–40.
Vasil’ev, V.P. and Grigoryan, K.A., Chromosome polymorphism and karyological relations of gobies of the group Neogobius cephalarges Pallas-Neogobius platyrostris Pallas Gobiidae, Genetika, 1994, vol. 30, no. 9, pp. 1251–1259.
Vasil’eva, E.D., Morphology of the skull of a deep-water goby Gobius bathybius Kessler in relation to its position within genus Gobius sensu lato (Gobiidae), J. Ichthyol., 1996, vol. 36, no. 4, pp. 487–491.
Vasil’eva, E.D., Taxonomic status of the tube-nosed goby Gobius marmoratus Pallas (Gobiidae) based on its skull morphology, J. Ichthyol., 1999, vol. 39, no. 2, pp. 139–148.
Vasil’eva, E.D., An annotated catalogue of fishes and fishlike organisms living in seas of Russia and adjacent countries. Pt. 4. Gobioidei, J. Ichthyol., 2003, vol. 43, suppl. 1, pp. 41–56.
Vasil’eva, E.D., The morphology of the skull and taxonomic status of goby Gobius ophiocephalus Pallas (Gobiidae, Pisces), Vestn. Mosk. Univ., Ser. 16: Biol., 1992a, no. 1, pp. 40–46.
Vasil’eva, E.D., The morphology of the skull and taxonomic position of goby Gobius gymnotrachelus (Gobiidae, Pisces), Vestn. Mosk. Univ., Ser. 16: Biol., 1992b, no. 2, pp. 46–50.
Vasil’eva, E.D., Ryby Chernogo morya. Opredelitel’ morskikh, solonovatovodnykh, evrigalinnykh i prokhodnykh vidov s tsvetnymi illyustratsiyami, sobrannymi S.V. Bogorodskim (Fish of the Black Sea. Key to Marine, Brackish Water, Euryhaline, and Anadromous Species with Color Illustrations, Collected by S.V. Bogorodsky), Moscow: Izd. VNIRO, 2007.
Vasil’eva, E.D. and Bogachik, T.A., The morphology of the skull of the knout goby Mesogobius batrachocephalus (Pallas) (Gobiidae, Pisces) and its position in the system of Gobiidae family, Byull. MOIP. Otd. Biol., 1991, vol. 96, no. 3, pp. 27–36.
Vasil’eva, E.D., Prazdnikov, D.V., and Vasil’ev, V.P., First confirmed occurrence of syrman goby Neogobius syrman (Gobiidae, Perciformes) in Sasyk Lake of the Black Sea basin and karyological characteristic of syrman goby and ginger goby N. eurycephalus, J. Ichthyol., 2011, vol. 51, no. 7, pp. 513–520.
Xia, X., Xie, Z., Salemi, M., Chen, L., and Wang, Y., An index of substitution saturation and its application, Mol. Phylogenet. Evol., 2003, vol. 26, pp. 1–7.