Rapid identification of bloodstream bacterial and fungal pathogens and their antibiotic resistance determinants from positively flagged blood cultures using the BioFire FilmArray blood culture identification panel

Journal of Microbiology, Immunology and Infection - Tập 53 - Trang 882-891 - 2020
Chun-Min Kang1,2, Xiang-Jun Chen1, Ching-Chin Chih1, Chen-Ching Hsu1, Ping-Hung Chen1, Tai fen Lee1, Lee-Jene Teng1,3, Po-Ren Hsueh1,4
1Department of Laboratory Medicine, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan,
2Department of Pediatrics, National Taiwan University Hospital, Taipei, Taiwan
3Graduate Institute of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine
4Department of Internal Medicine, National Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan

Tài liệu tham khảo

Harrison, 2006, The epidemiology of severe sepsis in england, wales and northern Ireland, 1996 to 2004: secondary analysis of a high quality clinical database, the icnarc case mix programme database, Crit Care, 10, R42, 10.1186/cc4854 van Vught, 2016, Incidence, risk factors, and attributable mortality of secondary infections in the intensive care unit after admission for sepsis, J Am Med Assoc, 315, 1469, 10.1001/jama.2016.2691 Kung, 2016, Risk factors of late-onset neonatal sepsis in Taiwan: a matched case-control study, J Microbiol Immunol Infect, 49, 430, 10.1016/j.jmii.2013.10.001 Kuo, 2018, The epidemiology, antibiograms and predictors of mortality among critically-ill patients with central line-associated bloodstream infections, J Microbiol Immunol Infect, 51, 401, 10.1016/j.jmii.2017.08.016 Levy, 2018, The surviving sepsis campaign bundle: 2018 update, Crit Care Med, 46, 997, 10.1097/CCM.0000000000003119 Caliendo, 2013, Better tests, better care: improved diagnostics for infectious diseases, Clin Infect Dis, 57, S139, 10.1093/cid/cit578 Huang, 2019, Comparison of clinical characteristics of bacteremia from Elizabethkingia meningoseptica and other carbapenem-resistant, non-fermenting Gram-negative bacilli at a tertiary medical center, J Microbiol Immunol Infect, 52, 304, 10.1016/j.jmii.2018.06.007 Ye, 2018, Clinical characteristics and treatment outcomes of vancomycin-resistant Enterococcus faecium bacteremia, J Microbiol Immunol Infect, 51, 705, 10.1016/j.jmii.2017.08.025 Garcia-Obregon, 2018, Identification of a panel of serum protein markers in early stage of sepsis and its validation in a cohort of patients, J Microbiol Immunol Infect, 51, 465, 10.1016/j.jmii.2016.12.002 Cockerill, 2004, Optimal testing parameters for blood cultures, Clin Infect Dis, 38, 1724, 10.1086/421087 Blaschke, 2012, Rapid identification of pathogens from positive blood cultures by multiplex polymerase chain reaction using the FilmArray system, Diagn Microbiol Infect Dis, 74, 349, 10.1016/j.diagmicrobio.2012.08.013 Rand, 2014, Direct identification of bacteria in positive blood cultures: Comparison of two rapid methods, FilmArray and mass spectrometry, Diagn Microbiol Infect Dis, 79, 293, 10.1016/j.diagmicrobio.2014.03.014 Lee, 2019, Performance of a multiplex PCR pneumonia panel for the identification of respiratory pathogens and the main determinants of resistance from the lower respiratory tract specimens of adult patients in intensive care units, J Microbiol Immunol Infect, 52, 920, 10.1016/j.jmii.2019.10.009 Fiori, 2016, Optimized use of the MALDI Biotyper system and the FilmArray BCID panel for direct identification of microbial pathogens from positive blood cultures, J Clin Microbiol, 54, 576, 10.1128/JCM.02590-15 Payne, 2018, Evaluation of the FilmArray blood culture identification panel compared to direct maldi-tof ms identification for rapid identification of pathogens, J Med Microbiol, 67, 1253, 10.1099/jmm.0.000802 Lin, 2018, A simple method for rapid microbial identification from positive monomicrobial blood culture bottles through matrix-assisted laser desorption ionization time-of-flight mass spectrometry, J Microbiol Immunol Infect, 51, 659, 10.1016/j.jmii.2017.03.005 Yonetani, 2016, Direct identification of microorganisms from positive blood cultures by MALDI-TOF MS using an in-house saponin method, Int J Infect Dis, 52, 37, 10.1016/j.ijid.2016.09.014 Chien, 2016, Applicability of an in-house saponin-based extraction method in Bruker Biotyper matrix-assisted laser desorption/ionization time-of-flight mass spectrometry system for identification of bacterial and fungal species in positively flagged blood cultures, Front Microbiol, 7, 1432, 10.3389/fmicb.2016.01432 Chusri, 2014, Clinical outcomes of hospital-acquired infection with Acinetobacter nosocomialis and Acinetobacter pittii, Antimicrob Agents Chemother, 58, 4172, 10.1128/AAC.02992-14 Huang, 2001, Characteristics of patients with Burkholderia cepacia bacteremia, J Microbiol Immunol Infect, 34, 215 Liu, 2019, Comparative efficacy of doripenem versus meropenem for hospital-acquired and ventilator-associated pneumonia, J Microbiol Immunol Infect, 52, 788, 10.1016/j.jmii.2019.04.008 Ting, 2018, Risk factors and outcomes for the acquisition of carbapenem-resistant Gram-negative bacillus bacteremia: a retrospective propensity-matched case control study, J Microbiol Immunol Infect, 51, 621, 10.1016/j.jmii.2016.08.022 Chen, 2012, Epidemiology, disease spectrum and economic burden of non-typhoidal Salmonella infections in Taiwan, 2006-2008, Epidemiol Infect, 140, 2256, 10.1017/S0950268812000088 Chen, 2019, Molecular epidemiology of the emerging ceftriaxone resistant non-typhoidal Salmonella in southern Taiwan, J Microbiol Immunol Infect, 52, 289, 10.1016/j.jmii.2018.08.007 Lin, 2018, Utility of a blood culture time to positivity-incorporated scoring model in predicting vascular infections in adults with nontyphoid Salmonella bacteremia, J Microbiol Immunol Infect, 51, 652, 10.1016/j.jmii.2018.01.004 Huang, 2004, Nontyphoid salmonellosis in Taiwan children: clinical manifestations, outcome and antibiotic resistance, J Pediatr Gastroenterol Nutr, 38, 518, 10.1097/00005176-200405000-00011 Stanaway, 2019, The global burden of non-typhoidal Salmonella invasive disease: a systematic analysis for the global burden of disease study 2017, Lancet Infect Dis, 19, 1312, 10.1016/S1473-3099(19)30418-9 Mukherjee, 2019, Increasing frequencies of antibiotic resistant non-typhoidal Salmonella infections in Michigan and risk factors for disease, Front Med, 6, 250, 10.3389/fmed.2019.00250 Liu, 2008, Increasing trends in antimicrobial resistance among clinically important anaerobes and bacteroides fragilis isolates causing nosocomial infections: emerging resistance to carbapenems, Antimicrob Agents Chemother, 52, 3161, 10.1128/AAC.00355-08 Nguyen, 2000, Antimicrobial resistance and clinical outcome of Bacteroides bacteremia: findings of a multicenter prospective observational trial, Clin Infect Dis, 30, 870, 10.1086/313805 Chen, 2019, Risk factors for and molecular characteristics of methicillin-resistant Staphylococcus aureus nasal colonization among healthy children in southern Taiwan, 2005-2010, J Microbiol Immunol Infect, 52, 929, 10.1016/j.jmii.2018.09.003 Sun, 2019, Molecular characterization of vancomycin-resistant enterococci isolated from a hospital in beijing, China, J Microbiol Immunol Infect, 52, 433, 10.1016/j.jmii.2018.12.008 Zirakzadeh, 2006, Vancomycin-resistant enterococci: colonization, infection, detection, and treatment, Mayo Clin Proc, 81, 529, 10.4065/81.4.529 Liao, 2019, Infect Drug Resist, 12, 545, 10.2147/IDR.S193638