RNA interference in protozoan parasites

Cellular Microbiology - Tập 6 Số 6 - Trang 509-519
Elisabetta Ullu1,2, Christian Tschudi2,3, Tirtha Chakraborty2
1Cell Biology, Yale Medical School, BCMM 136D, 295 Congress Avenue, Box 9812, New Haven, CT, 06536–8012, USA.
2Departments of Internal Medicine, Yale Medical School, BCMM 136D, 295 Congress Avenue, Box 9812, New Haven, CT, 06536–8012, USA.
3Epidemiology and Public Health, Yale Medical School, BCMM 136D, 295 Congress Avenue, Box 9812, New Haven, CT, 06536–8012, USA.

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Al-Anouti, 2002, Comparative analysis of antisense RNA, double-stranded RNA, and delta ribozyme-mediated gene regulation in Toxoplasma gondii, Antisense Nucl Acid Drug Dev, 12, 275, 10.1089/108729002320351593

Aravind, 2003, Plasmodium biology: genomic gleanings, Cell, 115, 771, 10.1016/S0092-8674(03)01023-7

Arkhipova, 2001, Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead, Proc Natl Acad Sci USA, 98, 14497, 10.1073/pnas.231494798

Bastin, 2000, Flagellum ontogeny in trypanosomes studied via an inherited and regulated RNA interference system, J Cell Sci, 113, 3321, 10.1242/jcs.113.18.3321

Baulcombe, 1999, Gene silencing: RNA makes RNA makes no protein, Curr Biol, 9, R599, 10.1016/S0960-9822(99)80383-2

Baulcombe, 2002, RNA silencing, Curr Biol, 12, R82, 10.1016/S0960-9822(02)00665-6

Bernstein, 2001, Role for a bidentate ribonuclease in the initiation step of RNA interference, Nature, 409, 363, 10.1038/35053110

Beverley, 2003, Protozomics: trypanosomatid parasite genetics comes of age, Nat Rev Genet, 4, 11, 10.1038/nrg980

Bohmert, 1998, AGO1 defines a novel locus of Arabidopsis controlling leaf development, EMBO J, 17, 170, 10.1093/emboj/17.1.170

Bracha, 2003, Transcriptional silencing of an amoebapore gene in Entamoeba histolytica: molecular analysis and effect on pathogenicity, Eukaryot Cell, 2, 295, 10.1128/EC.2.2.295-305.2003

Carmell, 2002, The Argonaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis, Genes Dev, 16, 2733, 10.1101/gad.1026102

Carmichael, 2003, Antisense starts making more sense, Nat Biotechnol, 21, 371, 10.1038/nbt0403-371

Catalanotto, 2000, Gene silencing in worms and fungi, Nature, 404, 245, 10.1038/35005169

Caudy, 2002, Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev, 16, 2491, 10.1101/gad.1025202

Caudy, 2003, A micrococcal nuclease homologue in RNAi effector complexes, Nature, 425, 411, 10.1038/nature01956

Cerutti, 2000, Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain, Trends Biochem Sci, 25, 481, 10.1016/S0968-0004(00)01641-8

Cogoni, 1999, Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase, Nature, 399, 166, 10.1038/20215

DaRocha, 2004, Tests of cytoplasmic RNA interference (RNAi) and construction of a tetracycline-inducible T7 promoter system in Trypanosoma cruzi, Mol Biochem Parasitol, 133, 175, 10.1016/j.molbiopara.2003.10.005

Djikeng, 2001, RNA interference in Trypanosoma brucei: cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs, RNA, 7, 1522

Djikeng, 2003, An siRNA ribonucleoprotein is found associated with polyribosomes in Trypanosoma brucei, RNA, 9, 802, 10.1261/rna.5270203

Durand-Dubief, 2003, TbAGO1, an Argonaute protein required for RNA interference is involved in mitosis and chromosome segregation in Trypanosoma brucei, BMC Biol, 1, 2, 10.1186/1741-7007-1-2

Dykxhoorn, 2003, Killing the messenger: short RNAs that silence gene expression, Nat Rev Mol Cell Biol, 4, 457, 10.1038/nrm1129

Elbashir, 2001, RNA interference is mediated by 21- and 22-nucleotide RNAs, Genes Dev, 15, 188, 10.1101/gad.862301

Elmendorf, 2001, The abundance of sterile transcripts in Giardia lamblia, Nucleic Acids Res, 29, 4674, 10.1093/nar/29.22.4674

Feinberg, 2003, Transport of dsRNA into cells by the transmembrane protein SID-1, Science, 301, 1545, 10.1126/science.1087117

Fire, 1998, Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans, Nature, 391, 806, 10.1038/35888

Hall, 2002, Establishment and maintenance of a heterochromatin domain, Science, 297, 2232, 10.1126/science.1076466

Hall, 2003, RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast, Proc Natl Acad Sci USA, 100, 193, 10.1073/pnas.232688099

Hammond, 2000, An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells, Nature, 404, 293, 10.1038/35005107

Hammond, 2001, Argonaute2, a link between genetic and biochemical analyses of RNAi, Science, 293, 1146, 10.1126/science.1064023

Hannon, 2002, RNA interference, Nature, 418, 244, 10.1038/418244a

Inoue, 2002, Tetracycline-regulated RNA interference in Trypanosoma congolense, Mol Biochem Parasitol, 120, 309, 10.1016/S0166-6851(02)00015-4

Ishizuka, 2002, A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins, Genes Dev, 16, 2497, 10.1101/gad.1022002

Kennerdell, 2002, RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E, Genes Dev, 16, 1884, 10.1101/gad.990802

Kumar, 1998, Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes, Microbiol Mol Biol Rev, 62, 1415, 10.1128/MMBR.62.4.1415-1434.1998

LaCount, 2000, Double-stranded RNA interference in Trypanosoma brucei using head-to-head promoters, Mol Biochem Parasitol, 111, 67, 10.1016/S0166-6851(00)00300-5

Lau, 2001, An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans, Science, 294, 858, 10.1126/science.1065062

Lee, 2001, An extensive class of small RNAs in Caenorhabditis elegans, Science, 294, 862, 10.1126/science.1065329

Liang, 2003, Small nucleolar RNA interference induced by antisense or double-stranded RNA in trypanosomatids, Proc Natl Acad Sci USA, 100, 7521, 10.1073/pnas.1332001100

Lingel, 2003, Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain, Nature, 426, 465, 10.1038/nature02123

Liu, 2002, RNA Interference in the pathogenic fungus Cryptococcus neoformans, Genetics, 160, 463, 10.1093/genetics/160.2.463

Liu, 2003, R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway, Science, 301, 1921, 10.1126/science.1088710

Malhotra, 2002, Double-stranded RNA-mediated gene silencing of cysteine proteases (falcipain-1 and -2) of Plasmodium falciparum, Mol Microbiol, 45, 1245, 10.1046/j.1365-2958.2002.03105.x

McRobert, 2002, RNA interference (RNAi) inhibits growth of Plasmodium falciparum, Mol Biochem Parasitol, 119, 273, 10.1016/S0166-6851(01)00429-7

Mette, 2000, Transcriptional silencing and promoter methylation triggered by double-stranded RNA, EMBO J, 19, 5194, 10.1093/emboj/19.19.5194

Mochizuki, 2002, Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena, Cell, 110, 689, 10.1016/S0092-8674(02)00909-1

Mohmmed, 2003, In vivo gene silencing in Plasmodium berghei- a mouse malaria model, Biochem Biophys Res Commun, 309, 506, 10.1016/j.bbrc.2003.08.027

Mourelatos, 2002, miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs, Genes Dev, 16, 720, 10.1101/gad.974702

Ngo, 1998, Double-stranded RNA induces mRNA degradation in Trypanosoma brucei, Proc Natl Acad Sci USA, 95, 14687, 10.1073/pnas.95.25.14687

Nykanen, 2001, ATP requirements and small interfering RNA structure in the RNA interference pathway, Cell, 107, 309, 10.1016/S0092-8674(01)00547-5

Pasquinelli, 2002, MicroRNAs: deviants no longer, Trends Genet, 18, 171, 10.1016/S0168-9525(01)02624-5

Reinhart, 2002, Small RNAs correspond to centromere heterochromatic repeats, Science, 297, 1831, 10.1126/science.1077183

Robinson, 2003, Improvements in transfection efficiency and tests of RNA interference (RNAi) approaches in the protozoan parasite Leishmania, Mol Biochem Parasitol, 128, 217, 10.1016/S0166-6851(03)00079-3

Schwarz, 2003, Asymmetry in the assembly of the RNAi enzyme complex, Cell, 115, 199, 10.1016/S0092-8674(03)00759-1

Shi, 2000, Genetic interference in Trypanosoma brucei by heritable and inducible double-stranded RNA, RNA, 6, 1069, 10.1017/S1355838200000297

Shi, 2004, Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance, Mol Cell Biol, 24, 420, 10.1128/MCB.24.1.420-427.2004

Sijen, 2001, On the role of RNA amplification in dsRNA-triggered gene silencing, Cell, 107, 465, 10.1016/S0092-8674(01)00576-1

Silhavy, 2002, A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs, EMBO J, 21, 3070, 10.1093/emboj/cdf312

Smardon, 2000, EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans, Curr Biol, 10, 169, 10.1016/S0960-9822(00)00323-7

Song, 2003, The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes, Nat Struct Biol, 10, 1026, 10.1038/nsb1016

Sprangers, 2003, High-resolution X-ray and NMR structures of the SMN Tudor domain: conformational variation in the binding site for symmetrically dimethylated arginine residues, J Mol Biol, 327, 507, 10.1016/S0022-2836(03)00148-7

Tabara, 1999, The rde-1 gene, RNA interference, and transposon silencing in C. elegans, Cell, 99, 123, 10.1016/S0092-8674(00)81644-X

Tabara, 2002, The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans, Cell, 109, 861, 10.1016/S0092-8674(02)00793-6

Tahbaz, 2004, Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer, EMBO Report, 5, 189, 10.1038/sj.embor.7400070

Tschudi, 2003, In vivo analysis of the RNA interference mechanism in Trypanosoma brucei, Methods, 30, 304, 10.1016/S1046-2023(03)00047-1

Volpe, 2002, Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi, Science, 297, 1833, 10.1126/science.1074973

Volpe, 2003, RNA interference is required for normal centromere function in fission yeast, Chromosome Res, 11, 137, 10.1023/A:1022815931524

Wang, 2001, RNA interference of a trypanosome topoisomerase II causes progressive loss of mitochondrial DNA, EMBO J, 20, 4674, 10.1093/emboj/20.17.4674

Wang, 1993, Giardiavirus double-stranded RNA genome encodes a capsid polypeptide and a gag-pol-like fusion protein by a translation frameshift, Proc Natl Acad Sci USA, 90, 8595, 10.1073/pnas.90.18.8595

Wang, 2000, Inhibition of Trypanosoma brucei gene expression by RNA interference using an integratable vector with opposing T7 promoters, J Biol Chem, 275, 40174, 10.1074/jbc.M008405200

Wickstead, 2003, Repetitive elements in genomes of parasitic protozoa, Microbiol Mol Biol Rev, 67, 360, 10.1128/MMBR.67.3.360-375.2003

Winston, 2002, Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1, Science, 7, 7

Yan, 2003, Structure and conserved RNA binding of the PAZ domain, Nature, 426, 468, 10.1038/nature02129

Zhang, 2000, Analysis of antisense and double stranded RNA downregulation of A2 protein expression in Leishmania donovani, Mol Biochem Parasitol, 107, 315, 10.1016/S0166-6851(99)00236-4

Zilberman, 2003, ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation, Science, 299, 716, 10.1126/science.1079695