RAPD, SCAR and conserved 18S rDNA markers for a red-listed and endemic medicinal plant species, Knema andamanica (Myristicaceae)

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410 Bachmann K (1997) Nuclear DNA markers in plant biosystematic research. Opera Bot 132:137–148 Bhakuni DS, Dhar ML, Dhar MM, Dhawan BN, Mehrotra BN (1969) Screening of Indian plants for biological activity, Part VIII. Indian J Exp Biol 7(4):250–262 Castells CJ, Rodrguez MG, Rosas BM, Garca CN, Navarrete VB (2008) Population genetics of the endangered Canarian endemic Atractylis arbuscula (Asteraceae): implications for taxonomy and conservation. Plant Syst Evol 274:99–109 Das M, Bhattacharya S, Pal A (2004) Generation and characterization of SCARs by cloning and sequencing of RAPD products: a strategy for species-specific marker development in bamboo. Ann Bot 95:835–841 Ding G, Zhang D, Yu Y, Zhang B, Zhao L (2012) Genetic identification and relationship analysis of medicinal Limonium by rDNA ITS sequence, single nucleotide polymorphism (SNP) and amplification refractory mutation system (ARMS). J Med Plants Res 6:4535–4539 Ghosh M, Chezhian P, Ramasamy S, Ramasamy Y (2011) Development of SCAR marker in Casuarina equisetifolia for species authentication. Trees 25:465–472 Jo SH, Koo DH, Kim JF, Hur CG, Lee S, Yang TJ, Kwon SY, Choi D (2009) Evolution of ribosomal DNA-derived satellite repeat in tomato genome. BMC Plant Biol 9:42 Kim CS, Lee CH, Park KW, Kang SJ, Shin IS, Lee GP (2005) Phylogenetic relationships among Pyrus pyrifolia and Pyrus communis detected by randomly amplified polymorphic DNA (RAPD) and conserved rDNA sequences. Sci Hortic 106:491–501 Lee GP, Lee CH, Kim CS (2004) Molecular markers derived from RAPD, SCAR and the conserved 18S rDNA sequences for classification and identification in Pyrus pyrifolia and P. communis. Theor Appl Genet 108:1487–1491 Lee EJ, Hwang IK, Kim NY, Lee KL, Han MS, Lee YH, Kim MY, Yang MS (2010) An assessment of the utility of universal and specific genetic markers for opium poppy identification. J Forensic Sci 55:1202–1208 Lee SY, Weber J, Mohamed R (2011) Genetic variation and molecular authentication of selected Aquilaria species from natural populations in Malaysia using RAPD and SCAR markers. Asian J Plant Sci 10:202–211 Li G, Park YJ (2012) SCAR markers for discriminating species fo two genera of medicinal plants, Liriope and Ophiopogon. Genet Mol Res 18:11 Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452 Maya KM, Zachariah JT, Krishnamurthy KS, Rema J, Krishnamoorthy B (2006) Fatty acids and leaf amino acids in Myristica fragrans Houtt. and related taxa. Indian J Hortic 63:316–318 Mentewab AB, Jacobsen MJ, Flowers RA (2011) Incomplete homogenization of 18 S ribosomal DNA coding regions in Arabidopsis thaliana. BMC Res Notes 4:93 Nei M, Rooney AP (2005) Concerted and birth and death evolution of mutligene families. Annu Rev Genet 39:121–152 Nickrent DL, Soltis DE (1995) A comparison of angiosperm phylogenies from nuclear 18S rDNA and rbcL sequences. Ann Mo Bot Gard 82:208–234 Prasad PRC, Reddy CS, Lakshmi RKV, Kumari PV, Raza SH (2009) List of species. Angiosperms of North Andaman, Andaman and Nicobar islands, India. Check List 5:254–269 Rema J, Krishnamoorthy B, Mathew PA (2005) Genetic diversity… Nutmeg (Myristica fragrans Houtt.). Indian Hortic 50:5–6 Rieseberg LH (1996) Homology among RAPD fragments in interspecific comparisons. Mol Ecol 5:99–105 Roy SC, Chattopadhyay A (2011) Evaluation of genetic diversity in mango germplasm resources using RAPD markers and characterization of cultivar Guti based on 18S rRNA gene sequence. Indian J Genet Plant Breed 71:254–261 Roy S, Krishnan P (2005) Mangrove stands of Andamans vis-à-vis tsunami. Curr Sci 89:1800–1804 Sasaki Y, Fushimi H, Cao H, Cai SQ, Komatsu K (2002) Sequence analysis of Chinese and Japanese Curcuma drugs on the 18S rRNA gene and trnK gene and the application of amplification-refractory mutation system analysis for their authentication. Biol Pharm Bull 25:1593–1599 Sharief MU (2007) Plants folk medicine of Negrito tribes of Bay Islands. Indian J Tradit Knowl 6:468–476 Sheeja TE, Rajesh Y, Krishnamoorthy B, Parthasarathy VA (2006) DNA polymorphism in clonal and seedling progenies of an elite nutmeg (Myristica fragrans Houtt.) by RAPD. J Plant Crop 34:558–561 Sheeja TE, George KJ, Jerome J, Varma RS, Syamkumar S, Krishnamoorthy B, Parthasarathy VA (2008) Optimization of DNA isolation and PCR parameters in Myristica sp. and related genera for RAPD and ISSR analysis. J Spices Aromat Crops 17:91–97 Sheeja TE, Sabeesh C, Shabna OV, Shalini RS, Krishnamoorthy B (2013) A comparative analysis of genetic diversity of wild and related genera of Myristica using RAPD and ISSR markers. J. Spices Aromat Crops 22 (in press) Soltis PS, Douglas ES, Paul GW, Daniel LN, Chaw SM, Russell LC (1999) The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal? Mol Biol Evol 16:1774–1784 Sun XQ, Wei YL, Zhou YF, Guo JL, Hang YY (2011) Development of species and region specific random amplification of polymorphic DNA- sequence characterized amplified region (RAPD-SCAR) markers for identification of the genuineness of Spica prunellae (Lamiaceae). J Med Plants Res 5:1677–1684 Valderrama J, Martinez C (2000) Distribution of flavonoids in the Myristicaceae. Phytochemistry 55:505–511 Yoo YK, Yuan T, Lee JS, Lee AK, Roh MS, Kurita S, Suh JK (2011) Species relationships of Lycoris endemic to Korea evaluated by RAPD and SNPs of nrDNA-ITS regions. Hortic Environ Biotechnol 52:145–151 Zhang YB, Shaw PC, Sze CW, Wang ZT, Tong Y (2007) Molecular authentication of Chinese herbal materials. J Food Drug Anal 15:1–9