Quantifying transport dynamics with three-dimensional single-particle tracking in adherent cells

STAR Protocols - Tập 3 - Trang 101790 - 2022
Chao Jiang1,2,3, Shuo-Xing Dou2,3, Peng-Ye Wang2,3,4, Hui Li1
1School of Systems Science and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
2Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
3School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
4Songshan Lake Materials Laboratory, Dongguan, Guangdong, 523808, China

Tài liệu tham khảo

Jiang, 2020, Quasi-two-dimensional diffusion in adherent cells revealed by three-dimensional single quantum dot tracking, Chinese Phys. Lett., 37, 078701, 10.1088/0256-307X/37/7/078701

Jiang, 2022, Spatiotemporal three-dimensional transport dynamics of endocytic cargos and their physical regulations in cells, iScience, 25, 104210, 10.1016/j.isci.2022.104210

Lerner, 2020, Two-parameter single-molecule analysis for measurement of chromatin mobility, STAR Protoc., 1, 100223, 10.1016/j.xpro.2020.100223

Li, 2018, Intracellular transport is accelerated in early apoptotic cells, Proc. Natl. Acad. Sci. USA, 115, 12118, 10.1073/pnas.1810017115

Li, 2015, Mapping intracellular diffusion distribution using single quantum dot tracking: compartmentalized diffusion defined by endoplasmic reticulum, J. Am. Chem. Soc., 137, 436, 10.1021/ja511273c

Lidke, 2004, Quantum dot ligands provide new insights into erbB/HER receptor–mediated signal transduction, Nat. Biotechnol., 22, 198, 10.1038/nbt929

Okada, 1982, Introduction of macromolecules into cultured mammalian cells by osmotic lysis of pinocytic vesicles, Cell, 29, 33, 10.1016/0092-8674(82)90087-3

Pinaud, 2010, Probing cellular events, one quantum dot at a time, Nat. Methods, 7, 275, 10.1038/nmeth.1444

Rejman, 2004, Size-dependent internalization of particles via the pathways of clathrin- and caveolae-mediated endocytosis, Biochem. J., 377, 159, 10.1042/bj20031253

Sbalzarini, 2005, Feature point tracking and trajectory analysis for video imaging in cell biology, J. Struct. Biol., 151, 182, 10.1016/j.jsb.2005.06.002

Tokunaga, 2008, Highly inclined thin illumination enables clear single-molecule imaging in cells, Nat. Methods, 5, 159, 10.1038/nmeth1171

Toprak, 2007, Three-dimensional particle tracking via bifocal imaging, Nano Lett., 7, 2043, 10.1021/nl0709120