QTL mapping in an interspecific sorghum population uncovers candidate regulators of salinity tolerance

Plant Stress - Tập 2 - Trang 100024 - 2021
Ashley N. Hostetler1,2, Rajanikanth Govindarajulu1,3, Jennifer S. Hawkins1
1Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV 26505, United States
2University of Delaware, Department of Plant and Soil Sciences, Delaware Biotechnology Institute, 590 Avenue 1743, Newark, DE 19713, United States
3Eurofins Lancaster Labs, 601 E. Jackson St., Richmond, VA 23219, United States

Tài liệu tham khảo

Rengasamy, 2006, World salinization with emphasis on Australia, J. Exp. Bot., 57, 1017, 10.1093/jxb/erj108 Food and Agriculture Organization (FAO). Land and plant nutrition management service. www.fao.org (2009). FAO. FAO soils portal. http://www.fao.org/soils-portal/soil-management/management-of-some-problem-soils/salt-affected-soils/more-information-on-salt-affected-soils/en/. (2017). Hasegawa, 2013, Sodium (Na+) homeostasis and salt tolerance of plants, Environ. Exp. Bot., 92, 19, 10.1016/j.envexpbot.2013.03.001 Munns, 2008, Mechanisms of salinity tolerance, Annu. Rev. Plant Biol., 59, 651, 10.1146/annurev.arplant.59.032607.092911 Zhao, 2020, Mechanisms of plant responses and adaptation to soil salinity, Innovation, 1 Munns, 2012, Wheat grain yield on saline soils is improved by an ancestral Na+ transporter gene, Nat. Biotech., 30, 360, 10.1038/nbt.2120 Aslam, 1993, A rapid screening technique for salt tolerance in rice (Oryza sativa L.), Plant Soil, 150, 99, 10.1007/BF00779180 Colmer, 2006, Improving salt tolerance of wheat and barley: future prospects, Aust. J. Exp. Agric., 45, 1425, 10.1071/EA04162 Cramer, 1994, Salt tolerance is not associated with the sodium accumulation of two maize hybrids, Functional Plant Biol., 21, 675, 10.1071/PP9940675 Fortmeier, 1995, Salt tolerance of maize (Zea mays L.): the role of sodium exclusion, Plant Cell Environ., 18, 1041, 10.1111/j.1365-3040.1995.tb00615.x Carillo, 2011, Salinity stress and salt tolerance Fan, 2015, Using QTL mapping to investigate the relationships between abiotic stress tolerance (drought and salinity) and agronomic and physiological traits, BMC Genomics, 16, 43, 10.1186/s12864-015-1243-8 Genc, 2016, Uncoupling of sodium and chloride to assist breeding for salinity tolerance in crops, New Phytol., 210, 145, 10.1111/nph.13757 Negrão, 2017, Evaluating physiological responses of plants to salinity stress, Ann. Bot., 119, 1, 10.1093/aob/mcw191 Munns, 2019, Osmotic adjustment and energy limitations to plant growth in saline soil, New Phytol. Munns, 2019, Energy costs of salt tolerance in crop plants, New Phytol. Flowers, 2015, Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes, Ann. Bot. (Lond.), 115, 419, 10.1093/aob/mcu217 Jones, 1979, Ionic and osmotic relations in plant cells, 63 Blaha, 2000, Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy, 317, 292 Bhandal, I. S. & Malik, C. P. Potassium estimation, uptake, and its role in the physiology and metabolism of flowering plants. in International Review of Cytology (eds. Bourne, G. H., Jeon, K. W. & Friedlander, M.) vol. 110 205–254 (Academic Press, 1988). Shabala, 2017, Signalling by potassium: another second messenger to add to the list?, J. Exp. Bot., 68, 4003, 10.1093/jxb/erx238 Vaidyanathan, 2003, Scavenging of reactive oxygen species in NaCl-stressed rice (Oryza sativa L.)—differential response in salt-tolerant and sensitive varieties, Plant Sci., 165, 1411, 10.1016/j.plantsci.2003.08.005 Miller, 2010, Reactive oxygen species homeostasis and signalling during drought and salinity stresses, Plant, Cell Environ., 33, 453, 10.1111/j.1365-3040.2009.02041.x Wang, 2019, Modulation of ethylene and ascorbic acid on reactive oxygen species scavenging in plant salt response, Front. Plant Sci., 10 Doggett, 1988 Doggett, 1970 Boursier, 1990, Growth responses and mineral nutrient relations of salt-stressed Sorghum, Crop Sci., 30, 1226, 10.2135/cropsci1990.0011183X003000060014x Almodares, A. & Sharif, M. E. Effects of irrigation water qualities on biomass and sugar contents of sugar beet and sweet sorghum cultivars. 6 (2007). Almodares, 2007, Effects of salt stress on germination percentage and seedling growth in sweet sorghum cultivars, J. Biol. Sci., 7, 1492, 10.3923/jbs.2007.1492.1495 Almodares, 2008, Sorghum stem yield and soluble carbohydrates under different salinity levels, Afr. J. Biotechnol., 7, 4051 Almodares, 2008, The effects of salt stress on growth parameters and carbohydrates contents in sweet Sorghum, Res. J. Environ. Sci., 2, 298, 10.3923/rjes.2008.298.304 Mullet, 2014, Energy Sorghum–a genetic model for the design of C4 grass bioenergy crops, J. Exp. Bot., 65, 3479, 10.1093/jxb/eru229 Fracasso, 2016, Drought tolerance strategies highlighted by two Sorghum bicolor races in a dry-down experiment, J. Plant Physiol., 190, 1, 10.1016/j.jplph.2015.10.009 McCormick, 2018, The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization, Plant J., 93, 338, 10.1111/tpj.13781 Guo, 2018, Energy dissipation and antioxidant enzyme system protect photosystem II of sweet Sorghum under drought stress, Photosynthetica, 56, 861, 10.1007/s11099-017-0741-0 Henderson, 2020, Phenotypic and physiological responses to salt exposure in Sorghum reveal diversity among domesticated landraces, Am. J. Bot., 107, 983, 10.1002/ajb2.1506 Brim, 1966, A modified pedigree method of selection in soybeans 1, Crop Sci., 6, 10.2135/cropsci1966.0011183X000600020041x Snape, 1975, Genetical consequences of single seed descent in the breeding of self-pollinating crops, Heredity, 35, 211, 10.1038/hdy.1975.85 Francois, 1984, Salinity effects on seed yield, growth, and germination of grain Sorghum1, Agron. J., 76, 741, 10.2134/agronj1984.00021962007600050008x Almodares, 2014, The response of sweet sorghum cultivars to salt stress and accumulation of Na+, CI and K+ ions in relation to salinity, J. Environ. Biol. /Acad. Environ. Biol., 35, 733 Sui, 2015, Identification and transcriptomic profiling of genes involved in increasing sugar content during salt stress in sweet sorghum leaves, BMC Genomics, 16, 534, 10.1186/s12864-015-1760-5 Ding, 2018, Evaluation of salt-tolerant germplasm and screening of the salt-tolerance traits of sweet sorghum in the germination stage, Funct. Plant Biol., 45, 1073, 10.1071/FP18009 2013 Fox, 2019 Peterson, B. G. & Carl, P. Performanceanalytics: econometric tools for performance and risk analysis. (2019). Julkowska, 2019, MVApp - Multivariate analysis application for streamlined data analysis and curation, Plant Physiol., 180, 1261, 10.1104/pp.19.00235 Oksanen, J. et al. vegan: community ecology package. (2019). Govindarajulu, 2021, Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum, G3 Genes|Genomes|Genet., 11, 10.1093/g3journal/jkab024 Paterson, 2008, Genomics of Sorghum, Int. J. Plant Genomics, 10.1155/2008/362451 Bradbury, 2007, TASSEL: software for association mapping of complex traits in diverse samples, Bioinformatics, 23, 2633, 10.1093/bioinformatics/btm308 Gonda, 2019, Sequencing-based bin map construction of a tomato mapping population, facilitating high-resolution quantitative trait loci detection, Plant Genome, 12, 10.3835/plantgenome2018.02.0010 Broman, 2009 Broman, 2003, R/qtl: {QTL} mapping in experimental crosses, Bioinformatics, 19, 889, 10.1093/bioinformatics/btg112 Churchill, 1994, Empirical threshold values for quantitative trait mapping, Genetics, 138, 963, 10.1093/genetics/138.3.963 Wang, 2020, QTL analysis of salt tolerance in Sorghum bicolor during whole-plant growth stages, Plant Breed., 139, 455, 10.1111/pbr.12805 Wu, 2019, Root vacuolar Na+ sequestration but not exclusion from uptake correlates with barley salt tolerance, Plant J., 1 Luo, 2019, Mapping of quantitative trait loci for seedling salt tolerance in maize, Mol. Breed., 39, 64, 10.1007/s11032-019-0974-7 Reddy, 2015, Genome-wide identification and characterization of the aquaporin gene family in Sorghum bicolor (L.), Plant Gene, 1, 18, 10.1016/j.plgene.2014.12.002 Sakurai, 2005, Identification of 33 rice aquaporin genes and analysis of their expression and function, Plant Cell Physiol., 46, 1568, 10.1093/pcp/pci172 Alexandersson, 2005, Whole gene family expression and drought stress regulation of aquaporins, Plant Mol. Biol., 59, 469, 10.1007/s11103-005-0352-1 Maurel, 2008, Plant aquaporins: membrane channels with multiple integrated functions, Annu. Rev. Plant Biol., 59, 595, 10.1146/annurev.arplant.59.032607.092734 Liu, 2015, Enhanced root hydraulic conductance by aquaporin regulation accounts for silicon alleviated salt-induced osmotic stress in Sorghum bicolor L, Environ. Exp. Bot., 111, 42, 10.1016/j.envexpbot.2014.10.006 Kadam, 2017, Characterization and regulation of aquaporin genes of Sorghum [Sorghum bicolor (L.) Moench] in response to waterlogging stress, Front. Plant Sci., 8, 10.3389/fpls.2017.00862 Hasan, 2017, Water use efficiency in the drought-stressed sorghum and maize in relation to expression of aquaporin genes, Biol. Plant., 61, 127, 10.1007/s10535-016-0656-9 Byrt, 2017, Non-selective cation channel activity of aquaporin AtPIP2;1 regulated by Ca2+ and pH, Plant, Cell Environ., 40, 802, 10.1111/pce.12832 Kourghi, 2017, Divalent cations regulate the ion conductance properties of diverse classes of aquaporins, Int. J. Mol. Sci., 18, 2323, 10.3390/ijms18112323 Boursiac, 2005, Early effects of salinity on water transport in arabidopsis roots. molecular and cellular features of aquaporin expression, Plant Physiol., 139, 790, 10.1104/pp.105.065029 Sutka, 2011, Natural variation of root hydraulics in Arabidopsis grown in normal and salt-stressed conditions, Plant Physiol., 155, 1264, 10.1104/pp.110.163113 Verdoucq, 2008, Structure–function analysis of plant aquaporin At PIP2; 1 gating by divalent cations and protons, Biochem. J., 415, 409, 10.1042/BJ20080275